DY257772

Overview
NameDY257772
Unique NameDY257772
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY257772 vs. ExPASy Swiss-Prot
Match: RS11_BURCH (30S ribosomal protein S11 OS=Burkholderia cenocepacia (strain HI2424) GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.424e-11
Identity = 40/108 (37.04%), Postives = 58/108 (53.70%), Query Frame = 2 
Query:  149 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 472
            GV H+ ASFN+T I +TD  G       +GG   K  R +S+P+AA +AA+   +   E G+  L ++++              +SA+RAL   G+KI  I DVTPIP
Sbjct:   23 GVVHVHASFNNTIITITDRQGNALAWATSGGQGFKGSR-KSTPFAAQVAAESAGRVAMEYGVKNLEVRIKG--------PGPGRESAVRALHGLGIKITAISDVTPIP 121
[Close]
BLAST of DY257772 vs. ExPASy Swiss-Prot
Match: RS11_BURCC (30S ribosomal protein S11 OS=Burkholderia cenocepacia (strain MC0-3) GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.424e-11
Identity = 40/108 (37.04%), Postives = 58/108 (53.70%), Query Frame = 2 
Query:  149 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 472
            GV H+ ASFN+T I +TD  G       +GG   K  R +S+P+AA +AA+   +   E G+  L ++++              +SA+RAL   G+KI  I DVTPIP
Sbjct:   23 GVVHVHASFNNTIITITDRQGNALAWATSGGQGFKGSR-KSTPFAAQVAAESAGRVAMEYGVKNLEVRIKG--------PGPGRESAVRALHGLGIKITAISDVTPIP 121
[Close]
BLAST of DY257772 vs. ExPASy Swiss-Prot
Match: RS11_BURCA (30S ribosomal protein S11 OS=Burkholderia cenocepacia (strain AU 1054) GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.424e-11
Identity = 40/108 (37.04%), Postives = 58/108 (53.70%), Query Frame = 2 
Query:  149 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 472
            GV H+ ASFN+T I +TD  G       +GG   K  R +S+P+AA +AA+   +   E G+  L ++++              +SA+RAL   G+KI  I DVTPIP
Sbjct:   23 GVVHVHASFNNTIITITDRQGNALAWATSGGQGFKGSR-KSTPFAAQVAAESAGRVAMEYGVKNLEVRIKG--------PGPGRESAVRALHGLGIKITAISDVTPIP 121
[Close]
BLAST of DY257772 vs. ExPASy Swiss-Prot
Match: RS11_BURA4 (30S ribosomal protein S11 OS=Burkholderia ambifaria (strain MC40-6) GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.424e-11
Identity = 40/108 (37.04%), Postives = 58/108 (53.70%), Query Frame = 2 
Query:  149 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 472
            GV H+ ASFN+T I +TD  G       +GG   K  R +S+P+AA +AA+   +   E G+  L ++++              +SA+RAL   G+KI  I DVTPIP
Sbjct:   23 GVVHVHASFNNTIITITDRQGNALAWATSGGQGFKGSR-KSTPFAAQVAAESAGRVAMEYGVKNLEVRIKG--------PGPGRESAVRALHGLGIKITAISDVTPIP 121
[Close]
BLAST of DY257772 vs. ExPASy Swiss-Prot
Match: RS11_BORPE (30S ribosomal protein S11 OS=Bordetella pertussis GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.424e-11
Identity = 38/108 (35.19%), Postives = 59/108 (54.63%), Query Frame = 2 
Query:  149 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 472
            G+AH+ ASFN+T I +TD  G       +GG   K  R +S+P+AA +AA+   +   E GI  L ++++              +S++RAL   G+KI  I D+TP+P
Sbjct:   23 GIAHVHASFNNTIITITDRQGNALSWATSGGAGFKGSR-KSTPFAAQVAAETAGRVAMEYGIKTLEVRIKG--------PGPGRESSVRALNALGIKISSIADITPVP 121
[Close]
BLAST of DY257772 vs. ExPASy Swiss-Prot
Match: RS11_BORPA (30S ribosomal protein S11 OS=Bordetella parapertussis GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.424e-11
Identity = 38/108 (35.19%), Postives = 59/108 (54.63%), Query Frame = 2 
Query:  149 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 472
            G+AH+ ASFN+T I +TD  G       +GG   K  R +S+P+AA +AA+   +   E GI  L ++++              +S++RAL   G+KI  I D+TP+P
Sbjct:   23 GIAHVHASFNNTIITITDRQGNALSWATSGGAGFKGSR-KSTPFAAQVAAETAGRVAMEYGIKTLEVRIKG--------PGPGRESSVRALNALGIKISSIADITPVP 121
[Close]
BLAST of DY257772 vs. ExPASy Swiss-Prot
Match: RS11_BORBR (30S ribosomal protein S11 OS=Bordetella bronchiseptica GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.424e-11
Identity = 38/108 (35.19%), Postives = 59/108 (54.63%), Query Frame = 2 
Query:  149 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 472
            G+AH+ ASFN+T I +TD  G       +GG   K  R +S+P+AA +AA+   +   E GI  L ++++              +S++RAL   G+KI  I D+TP+P
Sbjct:   23 GIAHVHASFNNTIITITDRQGNALSWATSGGAGFKGSR-KSTPFAAQVAAETAGRVAMEYGIKTLEVRIKG--------PGPGRESSVRALNALGIKISSIADITPVP 121
[Close]
BLAST of DY257772 vs. ExPASy Swiss-Prot
Match: RS11_BORA1 (30S ribosomal protein S11 OS=Bordetella avium (strain 197N) GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.424e-11
Identity = 38/108 (35.19%), Postives = 59/108 (54.63%), Query Frame = 2 
Query:  149 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 472
            G+AH+ ASFN+T I +TD  G       +GG   K  R +S+P+AA +AA+   +   E GI  L ++++              +S++RAL   G+KI  I D+TP+P
Sbjct:   23 GIAHVHASFNNTIITITDRQGNALSWATSGGAGFKGSR-KSTPFAAQVAAETAGRVAMEYGIKTLEVRIKG--------PGPGRESSVRALNALGIKISSIADITPVP 121
[Close]
BLAST of DY257772 vs. ExPASy Swiss-Prot
Match: RS11_BEII9 (30S ribosomal protein S11 OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.424e-11
Identity = 41/110 (37.27%), Postives = 60/110 (54.55%), Query Frame = 2 
Query:  143 VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 472
            V GVAH+ ++FN+T I +TD  G        G M  K  R +S+PYAA +AA+D +++  E G+  L +++               +SALRAL  +G  +  I DVTPIP
Sbjct:   17 VSGVAHVNSTFNNTMITITDAQGNTISWSSAGMMGFKGSR-KSTPYAAQMAAEDCARKAVEHGMRTLEVEVSG--------PGSGRESALRALQAAGFTVTSIRDVTPIP 117
[Close]
BLAST of DY257772 vs. ExPASy Swiss-Prot
Match: RS11_ACICJ (30S ribosomal protein S11 OS=Acidiphilium cryptum (strain JF-5) GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.424e-11
Identity = 40/108 (37.04%), Postives = 57/108 (52.78%), Query Frame = 2 
Query:  149 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 472
            GVAH+ ASFN+T + ++D  G        G    K  R +S+PYAA +AA+D  ++ +E G+  L I++               +SALRAL   G  I  I D+TPIP
Sbjct:   20 GVAHVLASFNNTMVTISDAQGNAISWSSAGSQGFKGSR-KSTPYAAQVAAEDAGRKAREHGMETLEIEVSG--------PGAGRESALRALQTIGFSITAIRDLTPIP 118
The following BLAST results are available for this feature:
BLAST of DY257772 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
RS11_BURCH5.424e-1137.0430S ribosomal protein S11 OS=Burkholderia cenocepa... [more]
RS11_BURCC5.424e-1137.0430S ribosomal protein S11 OS=Burkholderia cenocepa... [more]
RS11_BURCA5.424e-1137.0430S ribosomal protein S11 OS=Burkholderia cenocepa... [more]
RS11_BURA45.424e-1137.0430S ribosomal protein S11 OS=Burkholderia ambifari... [more]
RS11_BORPE5.424e-1135.1930S ribosomal protein S11 OS=Bordetella pertussis ... [more]
RS11_BORPA5.424e-1135.1930S ribosomal protein S11 OS=Bordetella parapertus... [more]
RS11_BORBR5.424e-1135.1930S ribosomal protein S11 OS=Bordetella bronchisep... [more]
RS11_BORA15.424e-1135.1930S ribosomal protein S11 OS=Bordetella avium (str... [more]
RS11_BEII95.424e-1137.2730S ribosomal protein S11 OS=Beijerinckia indica s... [more]
RS11_ACICJ5.424e-1137.0430S ribosomal protein S11 OS=Acidiphilium cryptum ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1BD05ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257772 ID=DY257772; Name=DY257772; organism=Citrus clementina; type=EST; length=740bp
GGTCTCACCAGCTGCTGCTTCTGTATTTCGAGGCTTTTGTGATCAACTCT
CCGTGTCATCAGTAGCCATGTCAAGAAGAAAGACCAGAGAGCCTAAGGAG
GAAAATGTTACTCTTGGACCTGCCGTTAGAGATGGTGAGCATGTATTTGG
CGTTGCCCACATTTTTGCGTCGTTTAATGACACTTTCATTCATGTGACTG
ACTTGTCTGGAAGAGAAACTCTTGTGCGCATTACTGGTGGTATGAAGGTT
AAAGCTGACAGGGATGAATCCTCCCCTTATGCAGCTATGCTTGCAGCACA
AGATGTTTCTCAACGATGCAAGGAGCTTGGCATTACTGCTCTTCATATTA
AGCTCCGGGCTACTGGGGGTAACAAAACTAAAACTCCTGGTCCAGGTGCT
CAGTCAGCACTTAGAGCTCTTGCTCGTTCTGGAATGAAGATTGGCCGCAT
AGAGGATGTGACTCCAATTCCCACCGACAGTACCCGCAGAAAGGGTGGTA
GAAGGGGTAGAAGGTTGTAATTCTTTTCCTCACACCCATCCATAACGTTC
AAGATGATGCCGTGGTTACAGAGAGTTTCACTCTCTTCTGTTAGATGCAA
GACTTATTTCCCAATTTTGTTGTTTGGAATGTCTGTAGTCTCGGATTCCT
TTGTGTTAGCCTTTCCGATCAATTAAGTTTATACGGTGGCAAGACTAATC
ATTTCTCCATGAGTTTCTGAATTTATTGTTTATCTACATT
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