DY257772

Overview
NameDY257772
Unique NameDY257772
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257772 vs. ExPASy Swiss-Prot
Match: RS11_STRP3 (30S ribosomal protein S11 OS=Streptococcus pyogenes serotype M3 GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.084e-11
Identity = 36/108 (33.33%), Postives = 62/108 (57.41%), Query Frame = 2
Query:  149 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 472
            GVAHI A+FN+T + +TD+ G        G +  K  R +S+P+AA +AA+  ++  +E G+  + + ++              +SA+RALA +G+++  I DVTP+P
Sbjct:   17 GVAHIHATFNNTIVMITDVHGNALAWSSAGALGFKGSR-KSTPFAAQMAAEAAAKSAQEHGLKTVEVTVKG--------PGSGRESAIRALAAAGLEVTAIRDVTPVP 115          
BLAST of DY257772 vs. ExPASy Swiss-Prot
Match: RS11_STRP1 (30S ribosomal protein S11 OS=Streptococcus pyogenes serotype M1 GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.084e-11
Identity = 36/108 (33.33%), Postives = 62/108 (57.41%), Query Frame = 2
Query:  149 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 472
            GVAHI A+FN+T + +TD+ G        G +  K  R +S+P+AA +AA+  ++  +E G+  + + ++              +SA+RALA +G+++  I DVTP+P
Sbjct:   17 GVAHIHATFNNTIVMITDVHGNALAWSSAGALGFKGSR-KSTPFAAQMAAEAAAKSAQEHGLKTVEVTVKG--------PGSGRESAIRALAAAGLEVTAIRDVTPVP 115          
BLAST of DY257772 vs. ExPASy Swiss-Prot
Match: RS11_STREM (30S ribosomal protein S11 OS=Streptococcus equi subsp. zooepidemicus (strain MGCS10565) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.084e-11
Identity = 36/108 (33.33%), Postives = 62/108 (57.41%), Query Frame = 2
Query:  149 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 472
            GVAHI A+FN+T + +TD+ G        G +  K  R +S+P+AA +AA+  ++  +E G+  + + ++              +SA+RALA +G+++  I DVTP+P
Sbjct:   17 GVAHIHATFNNTIVMITDVHGNALAWSSAGALGFKGSR-KSTPFAAQMAAEAAAKSAQEHGLKTVEVTVKG--------PGSGRESAIRALAAAGLEVTAIRDVTPVP 115          
BLAST of DY257772 vs. ExPASy Swiss-Prot
Match: RS11_STRE4 (30S ribosomal protein S11 OS=Streptococcus equi subsp. equi (strain 4047) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.084e-11
Identity = 36/108 (33.33%), Postives = 62/108 (57.41%), Query Frame = 2
Query:  149 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 472
            GVAHI A+FN+T + +TD+ G        G +  K  R +S+P+AA +AA+  ++  +E G+  + + ++              +SA+RALA +G+++  I DVTP+P
Sbjct:   17 GVAHIHATFNNTIVMITDVHGNALAWSSAGALGFKGSR-KSTPFAAQMAAEAAAKSAQEHGLKTVEVTVKG--------PGSGRESAIRALAAAGLEVTAIRDVTPVP 115          
BLAST of DY257772 vs. ExPASy Swiss-Prot
Match: RS11_STRA5 (30S ribosomal protein S11 OS=Streptococcus agalactiae serotype V GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.084e-11
Identity = 36/108 (33.33%), Postives = 62/108 (57.41%), Query Frame = 2
Query:  149 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 472
            GVAHI A+FN+T + +TD+ G        G +  K  R +S+P+AA +AA+  ++  +E G+  + + ++              +SA+RALA +G+++  I DVTP+P
Sbjct:   17 GVAHIHATFNNTIVMITDVHGNALAWSSAGALGFKGSR-KSTPFAAQMAAEAAAKSAQEHGLKTVEVTVKG--------PGSGRESAIRALAAAGLEVTAIRDVTPVP 115          
BLAST of DY257772 vs. ExPASy Swiss-Prot
Match: RS11_STRA3 (30S ribosomal protein S11 OS=Streptococcus agalactiae serotype III GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.084e-11
Identity = 36/108 (33.33%), Postives = 62/108 (57.41%), Query Frame = 2
Query:  149 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 472
            GVAHI A+FN+T + +TD+ G        G +  K  R +S+P+AA +AA+  ++  +E G+  + + ++              +SA+RALA +G+++  I DVTP+P
Sbjct:   17 GVAHIHATFNNTIVMITDVHGNALAWSSAGALGFKGSR-KSTPFAAQMAAEAAAKSAQEHGLKTVEVTVKG--------PGSGRESAIRALAAAGLEVTAIRDVTPVP 115          
BLAST of DY257772 vs. ExPASy Swiss-Prot
Match: RS11_STRA1 (30S ribosomal protein S11 OS=Streptococcus agalactiae serotype Ia GN=rpsK PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 7.084e-11
Identity = 36/108 (33.33%), Postives = 62/108 (57.41%), Query Frame = 2
Query:  149 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 472
            GVAHI A+FN+T + +TD+ G        G +  K  R +S+P+AA +AA+  ++  +E G+  + + ++              +SA+RALA +G+++  I DVTP+P
Sbjct:   17 GVAHIHATFNNTIVMITDVHGNALAWSSAGALGFKGSR-KSTPFAAQMAAEAAAKSAQEHGLKTVEVTVKG--------PGSGRESAIRALAAAGLEVTAIRDVTPVP 115          
BLAST of DY257772 vs. ExPASy Swiss-Prot
Match: RS11_SINMW (30S ribosomal protein S11 OS=Sinorhizobium medicae (strain WSM419) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.084e-11
Identity = 40/108 (37.04%), Postives = 60/108 (55.56%), Query Frame = 2
Query:  149 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 472
            GVAH+ +SFN+T I +TD  G        G    K  R +S+P+AA +AA+D +++ +E G+ +L +++               +SALRAL  +G  I  I DVTPIP
Sbjct:   19 GVAHVNSSFNNTMITITDAQGNAIAWSSAGAKGFKGSR-KSTPFAAQIAAEDCAKKAQEHGMKSLEVEV--------CGPGSGRESALRALQAAGFMITSIRDVTPIP 117          
BLAST of DY257772 vs. ExPASy Swiss-Prot
Match: RS11_RHOPT (30S ribosomal protein S11 OS=Rhodopseudomonas palustris (strain TIE-1) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.084e-11
Identity = 40/108 (37.04%), Postives = 60/108 (55.56%), Query Frame = 2
Query:  149 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 472
            G+AH+ +SFN+T I +TD  G        G M  K  R +S+PYAA +AA+DV+++ +E G+  L +++               +SALRAL  +G  +  I DVT IP
Sbjct:   19 GIAHVNSSFNNTTITITDAQGNAIAWSSAGTMGFKGSR-KSTPYAAQVAAEDVAKKAQEHGMRTLEVEVAG--------PGSGRESALRALQAAGFTVTSIRDVTTIP 117          
BLAST of DY257772 vs. ExPASy Swiss-Prot
Match: RS11_RHOPS (30S ribosomal protein S11 OS=Rhodopseudomonas palustris (strain BisB5) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.084e-11
Identity = 40/108 (37.04%), Postives = 60/108 (55.56%), Query Frame = 2
Query:  149 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 472
            G+AH+ +SFN+T I +TD  G        G M  K  R +S+PYAA +AA+DV+++ +E G+  L +++               +SALRAL  +G  +  I DVT IP
Sbjct:   19 GIAHVNSSFNNTTITITDAQGNAIAWSSAGTMGFKGSR-KSTPYAAQVAAEDVAKKAQEHGMRTLEVEVAG--------PGSGRESALRALQAAGFTVTSIRDVTTIP 117          
The following BLAST results are available for this feature:
BLAST of DY257772 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
RS11_STRP37.084e-1133.3330S ribosomal protein S11 OS=Streptococcus pyogene... [more]
RS11_STRP17.084e-1133.3330S ribosomal protein S11 OS=Streptococcus pyogene... [more]
RS11_STREM7.084e-1133.3330S ribosomal protein S11 OS=Streptococcus equi su... [more]
RS11_STRE47.084e-1133.3330S ribosomal protein S11 OS=Streptococcus equi su... [more]
RS11_STRA57.084e-1133.3330S ribosomal protein S11 OS=Streptococcus agalact... [more]
RS11_STRA37.084e-1133.3330S ribosomal protein S11 OS=Streptococcus agalact... [more]
RS11_STRA17.084e-1133.3330S ribosomal protein S11 OS=Streptococcus agalact... [more]
RS11_SINMW7.084e-1137.0430S ribosomal protein S11 OS=Sinorhizobium medicae... [more]
RS11_RHOPT7.084e-1137.0430S ribosomal protein S11 OS=Rhodopseudomonas palu... [more]
RS11_RHOPS7.084e-1137.0430S ribosomal protein S11 OS=Rhodopseudomonas palu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1BD05ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257772 ID=DY257772; Name=DY257772; organism=Citrus clementina; type=EST; length=740bp
GGTCTCACCAGCTGCTGCTTCTGTATTTCGAGGCTTTTGTGATCAACTCT
CCGTGTCATCAGTAGCCATGTCAAGAAGAAAGACCAGAGAGCCTAAGGAG
GAAAATGTTACTCTTGGACCTGCCGTTAGAGATGGTGAGCATGTATTTGG
CGTTGCCCACATTTTTGCGTCGTTTAATGACACTTTCATTCATGTGACTG
ACTTGTCTGGAAGAGAAACTCTTGTGCGCATTACTGGTGGTATGAAGGTT
AAAGCTGACAGGGATGAATCCTCCCCTTATGCAGCTATGCTTGCAGCACA
AGATGTTTCTCAACGATGCAAGGAGCTTGGCATTACTGCTCTTCATATTA
AGCTCCGGGCTACTGGGGGTAACAAAACTAAAACTCCTGGTCCAGGTGCT
CAGTCAGCACTTAGAGCTCTTGCTCGTTCTGGAATGAAGATTGGCCGCAT
AGAGGATGTGACTCCAATTCCCACCGACAGTACCCGCAGAAAGGGTGGTA
GAAGGGGTAGAAGGTTGTAATTCTTTTCCTCACACCCATCCATAACGTTC
AAGATGATGCCGTGGTTACAGAGAGTTTCACTCTCTTCTGTTAGATGCAA
GACTTATTTCCCAATTTTGTTGTTTGGAATGTCTGTAGTCTCGGATTCCT
TTGTGTTAGCCTTTCCGATCAATTAAGTTTATACGGTGGCAAGACTAATC
ATTTCTCCATGAGTTTCTGAATTTATTGTTTATCTACATT
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