DY257785

Overview
NameDY257785
Unique NameDY257785
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1084
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257785 vs. ExPASy Swiss-Prot
Match: CHI12_ORYSJ (Chitinase 12 OS=Oryza sativa subsp. japonica GN=Cht12 PE=2 SV=2)

HSP 1 Score: 254.988 bits (650), Expect = 5.640e-67
Identity = 124/247 (50.20%), Postives = 155/247 (62.75%), Query Frame = 3
Query:  159 GTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNET-MRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPS--PYC--NLNYPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGLHLDCY 878
            G+ G  +  I+SR +F+ +L +RND  CPA  FYTYDAF+ AA AFP F  +G +     RE+AAF AQT HETTGGW  AP G YAWGYCF  E    +   YC  +  +PC    KYYGRGPIQL++N+NY                    A+D  +SF +A WFWMT Q PKPSCH V T +W PSA+D  AGR+PGYG+ TNIINGG+ECG G +D V +RIGF+  +C   G+    +LDCY
Sbjct:   75 GSGGSGVASIVSRSLFDQMLLHRNDAACPASNFYTYDAFVAAASAFPGFAAAGGDADTNKREVAAFLAQTSHETTGGWATAPDGPYAWGYCFKEENGGAAGPDYCQQSAQWPCAAGKKYYGRGPIQLSYNFNY--GPAGQAIGADLLGDPDLVASDATVSFDTAFWFWMTPQSPKPSCHAVATGQWTPSADDQAAGRVPGYGVITNIINGGLECGHGEDDRVADRIGFYKRYCDILGVSYDANLDCY 319          
BLAST of DY257785 vs. ExPASy Swiss-Prot
Match: CHI11_ORYSJ (Chitinase 11 OS=Oryza sativa subsp. japonica GN=Cht11 PE=2 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 2.369e-65
Identity = 119/234 (50.85%), Postives = 156/234 (66.67%), Query Frame = 3
Query:  177 LGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWN-DAVRNRIGFFSTFCGKFGIQPGLHLDC 875
            +G II+R MFE +L +R D  C    FYTYDAFI+AA  FP FG +GN+  R RE+AAFF QT HETTGGW  AP G +AWGYC ++EI+P  P           YYGRGPIQLT  YNY                    ++DPV++F++AIWFWMTAQ PKPSCH+VIT++W PS +D ++GRLPGYG+ TNIINGG ECG+G++ D  ++R+G++  +C  F +  G ++ C
Sbjct:   27 VGSIITRAMFESMLSHRGDQGCQG-AFYTYDAFIKAAGDFPRFGTTGNDETRRRELAAFFGQTSHETTGGWATAPDGPFAWGYCRVNEITPSDP----------PYYGRGPIQLTHKYNYQLAGDALGLDLVNNPDLV--SSDPVVAFRTAIWFWMTAQSPKPSCHDVITNQWTPSGDDRSSGRLPGYGMATNIINGGEECGKGYSTDNAKDRVGYYKRYCDMFRVGYGDNIAC 247          
BLAST of DY257785 vs. ExPASy Swiss-Prot
Match: CHIA_SOLCI (Acidic endochitinase pcht28 OS=Solanum chilense PE=2 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 2.006e-64
Identity = 119/239 (49.79%), Postives = 148/239 (61.92%), Query Frame = 3
Query:  159 GTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGLHLDC 875
            GT     G I++RE+FE +L +RN+  CPA+GFYTYDAFI AA +FP FG +G++T R +EIAAFF QT HET GG      G +  GYCF+ +I               +YYGRGPIQLT   NY R                  ATDP++SF++AIWFWMTAQ  KPSCH VI  +W PS  D  A R+PGYG+ TNIINGG+EC  G N AV +RIGF+  +CG   +  G +LDC
Sbjct:   21 GTLAQNAGSIVTRELFEQMLSFRNNDACPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETKGG----SAGTFTGGYCFVRQIDQSD-----------RYYGRGPIQLTHQSNYERAGQGIGVGQDLVNNPDLVATDPIISFRTAIWFWMTAQDNKPSCHNVIIGQWTPSPADTAANRVPGYGVITNIINGGLECNMGPNTAVESRIGFYRRYCGMLNVPTGENLDC 244          
BLAST of DY257785 vs. ExPASy Swiss-Prot
Match: CHIA_SOLLC (Acidic 26 kDa endochitinase OS=Solanum lycopersicum GN=CHI3 PE=1 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 9.955e-64
Identity = 118/239 (49.37%), Postives = 145/239 (60.67%), Query Frame = 3
Query:  159 GTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGLHLDC 875
            GT     G I++RE+FE +L +RN+  CPA+GFYTYDAFI AA +FP FG +G++T R +EIAAFF QT HET GG      G +  GYCF+ +I               +YYGRGPIQLT   NY R                  ATDP++SFK+AIWFWMT Q  KPSCH VI  +W PS  D  A R+PGYG+ TNIING  ECG G N A  +RIGF+  +CG   +  G +LDC
Sbjct:   21 GTLAQNAGSIVTRELFEQMLSFRNNDACPAKGFYTYDAFIAAANSFPGFGTAGDDTARKKEIAAFFGQTSHETNGG----SAGTFTGGYCFVKQIEQSD-----------RYYGRGPIQLTHQSNYERAGQGIGVGQELVNNPDLVATDPIISFKTAIWFWMTEQDNKPSCHNVIIGQWTPSPKDTAANRVPGYGVITNIINGQFECGMGPNTAAESRIGFYRRYCGMLNVPTGENLDC 244          
BLAST of DY257785 vs. ExPASy Swiss-Prot
Match: CHIB_SOLLC (Acidic 27 kDa endochitinase OS=Solanum lycopersicum GN=CHI17 PE=1 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 3.783e-63
Identity = 122/240 (50.83%), Postives = 153/240 (63.75%), Query Frame = 3
Query:  159 GTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGLHLDCY 878
            G+   ++G I++ ++F ++L  RND RCPA+GFYTYDAFI AA +FP FG +G++T R +EIAAFF QT HETTGG   A G  +A GYCF+ E +               +YGRGPIQLT   NY                    ATD  +SFK+AIWFWMTAQ  KPSCH+VIT +W PSA D +A R PGYG+ TNIINGGIECG+G N  V +RIGF+  +C    + PG +LDCY
Sbjct:   13 GSFAQDVGTIVTSDLFNEMLKNRNDDRCPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETTGGSLSADG-PFAGGYCFVREGNQMG----------SGFYGRGPIQLTGQSNY--DLAGQAIGQDLVNNPDLVATDATVSFKTAIWFWMTAQGNKPSCHDVITGQWTPSAADASANRQPGYGVITNIINGGIECGKGQNPQVEDRIGFYRRYCTILNVAPGDNLDCY 239          
BLAST of DY257785 vs. ExPASy Swiss-Prot
Match: CHIB_POPTR (Acidic endochitinase WIN6.2B OS=Populus trichocarpa PE=2 SV=2)

HSP 1 Score: 241.121 bits (614), Expect = 8.427e-63
Identity = 126/261 (48.28%), Postives = 146/261 (55.94%), Query Frame = 3
Query:  120 GSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGW-NDAVRNRIGFFSTFCGKFGIQPGLHLDCYHNSLLAY 899
            G G   G    G G   G L  II   MF+D+L YRND +CPA GFYTY+AFI AAK FP FGN+G++ MR REIAAF  QT HET G W  A G +Y WGYC +                              NYNY  C                  TDP ++FK+A+WFWMT Q PKPSCH VIT+ W PSA D  AGR+PGYG+ TNIINGGIECGQG  N+A  NRIGF+ T+C   G   G +LDCY      Y
Sbjct:   66 GGGGGGGGGGGGGGGGDGYLSDIIPESMFDDMLKYRNDPQCPAVGFYTYNAFISAAKEFPDFGNTGDDLMRKREIAAFLGQTSHETNGWWPAAQGDQYDWGYCHM------------------------------NYNYGLCGDDLNLPLLQEPELVE--TDPFIAFKTALWFWMTPQSPKPSCHAVITESWTPSAADSEAGRVPGYGVITNIINGGIECGQGGPNNANENRIGFYKTYCDSLGTTYGSNLDCYQQRPFGY 294          
BLAST of DY257785 vs. ExPASy Swiss-Prot
Match: CHI8_ORYSJ (Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht8 PE=2 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 5.462e-62
Identity = 127/260 (48.85%), Postives = 157/260 (60.38%), Query Frame = 3
Query:  117 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNET-MRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEI----SPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGLHLDCYH 881
            C +  +     +G    G  +G +I++ +F  +LP R++ +CPARGFYTYDAFI AA +FPAFG SG    +  RE+AAFF QT HETTGG R +   ++ WGYCF  EI    SPP             YYGRGPIQLT   NY                    +TD V+SFK+AIWFWMTAQ  KPSCH+VI   W PSA D  AGR+PGYG+ TNIINGGIECG G NDA  +RIG++  +C   G   G +LDCY+
Sbjct:   14 CAAASLLAVAASGAAAQG--VGSVITQAVFNSMLPNRDNSQCPARGFYTYDAFIAAANSFPAFGTSGGSAELIRRELAAFFGQTSHETTGGTRGS-SDQFQWGYCFKEEINKATSPP-------------YYGRGPIQLTGQSNYQAAGNALGLDLVGNPDLV--STDAVVSFKTAIWFWMTAQGNKPSCHDVILGRWTPSAADTAAGRVPGYGVITNIINGGIECGVGQNDANVDRIGYYKRYCDMLGAGYGSNLDCYN 255          
BLAST of DY257785 vs. ExPASy Swiss-Prot
Match: CHIQ_TOBAC (Acidic endochitinase Q OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 2.076e-61
Identity = 118/235 (50.21%), Postives = 147/235 (62.55%), Query Frame = 3
Query:  177 LGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGLHLDCYH 881
            +G I++ ++F ++L  RND RCPA GFYTYDAFI AA +FP FG +G++T R +EIAAFF QT HETTGG   A    +  GYCF+ +                +YYGRGPIQLT   NY +                  ATD  +SFK+AIWFWMT Q  KPS H+VI   W PSA D  A R+PGYG+ TNIINGGIECG G NDAV +RIG++  +CG   + PG +LDCY+
Sbjct:   27 IGSIVTSDLFNEMLKNRNDGRCPANGFYTYDAFIAAANSFPGFGTTGDDTARRKEIAAFFGQTSHETTGGSLSAE--PFTGGYCFVRQNDQSD-----------RYYGRGPIQLTNRNNYEKAGTAIGQELVNNPDLV--ATDATISFKTAIWFWMTPQDNKPSSHDVIIGRWTPSAADQAANRVPGYGVITNIINGGIECGIGRNDAVEDRIGYYRRYCGMLNVAPGENLDCYN 246          
BLAST of DY257785 vs. ExPASy Swiss-Prot
Match: CHI10_ORYSJ (Chitinase 10 OS=Oryza sativa subsp. japonica GN=Cht10 PE=2 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 3.915e-60
Identity = 109/248 (43.95%), Postives = 150/248 (60.48%), Query Frame = 3
Query:  153 GHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNL---NYPC-RGK-YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGLHLDCYH 881
            G+      +  I+S +++  L  +++D  CPARGFYTY +F+ AA  FP F  +G    R RE+AAF AQ  HETTGGW  AP G YAWG C+  EI+P S YC+     +PC  GK Y+GRGPIQ++WN+NY                     +D  ++F++A+WFWMT +  KPSCH+V+  E++P   DV A R  G+GL TNI+NGG+EC +  +  V NRIGF+  +C   G+  G +LDC H
Sbjct:   41 GYSPSPSPVSSIVSEQLYASLFLHKDDAACPARGFYTYASFVRAATRFPRFAATGCADARKREVAAFLAQISHETTGGWATAPDGPYAWGLCYKEEINPQSSYCDATDKQWPCYPGKSYHGRGPIQISWNFNYGPAGQALGFDGLRNPEIVANCSD--IAFQTALWFWMTPRDTKPSCHQVMVGEYRPGPADVAANRTAGFGLVTNIVNGGLECNRAGDARVNNRIGFYRRYCQVLGVDVGPNLDCEH 286          
BLAST of DY257785 vs. ExPASy Swiss-Prot
Match: CHIT_PETHY (Acidic endochitinase OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 6.677e-60
Identity = 120/241 (49.79%), Postives = 148/241 (61.41%), Query Frame = 3
Query:  159 GTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGLHLDCYH 881
            GT    +G I++ ++F+ +L  RND RC A  FYTYDAFI AA +FP FG +G++T R +EIAAFF QT HETTGG   +P G YA GYCF+ E +               YYGRGPIQLT   NY                    ATD  +SFK+AIWFWMT Q  KPSCH+VIT  W PSA D +A R+PGYG+ TNIINGGIECG+G N  V +RIG++        + PG +LDCY+
Sbjct:   20 GTLAQNVGSIVTSDLFDQMLKNRNDARCFAVRFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETTGGTL-SPDGPYAGGYCFLREGNQMG----------NGYYGRGPIQLTGQSNY--DLAGKAIEQDLVNNPDLVATDATVSFKTAIWFWMTPQGNKPSCHDVITGRWTPSAADTSANRVPGYGVITNIINGGIECGKGQNARVEDRIGYYRRNVSIMNVAPGDNLDCYN 247          
The following BLAST results are available for this feature:
BLAST of DY257785 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI12_ORYSJ5.640e-6750.20Chitinase 12 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHI11_ORYSJ2.369e-6550.85Chitinase 11 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIA_SOLCI2.006e-6449.79Acidic endochitinase pcht28 OS=Solanum chilense PE... [more]
CHIA_SOLLC9.955e-6449.37Acidic 26 kDa endochitinase OS=Solanum lycopersicu... [more]
CHIB_SOLLC3.783e-6350.83Acidic 27 kDa endochitinase OS=Solanum lycopersicu... [more]
CHIB_POPTR8.427e-6348.28Acidic endochitinase WIN6.2B OS=Populus trichocarp... [more]
CHI8_ORYSJ5.462e-6248.85Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIQ_TOBAC2.076e-6150.21Acidic endochitinase Q OS=Nicotiana tabacum PE=1 S... [more]
CHI10_ORYSJ3.915e-6043.95Chitinase 10 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIT_PETHY6.677e-6049.79Acidic endochitinase OS=Petunia hybrida PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1BG05ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257785 ID=DY257785; Name=DY257785; organism=Citrus clementina; type=EST; length=1084bp
GACACCAAGCAGAGGATAATTGATATCATAACTGTTGCTTTCAAATGAGG
CTTATTGCGTCCTTACTAGTTTTCTCTCTAGTTTTATCTTTCGTACTAGG
AGGCTCAGCACGGAATTGTGGAAGCGGCGTTGTGTGCGGTGAACGTGATA
CCGGCCACGGGACGGATGGCGGTGAACTGGGCAAGATCATCTCAAGGGAG
ATGTTTGAAGACTTGCTTCCGTATAGAAATGATGTACGATGCCCTGCCAG
AGGCTTCTACACTTATGATGCTTTTATAGAGGCAGCCAAAGCTTTTCCAG
CCTTTGGTAACTCTGGAAATGAAACCATGCGTACAAGAGAAATTGCTGCC
TTTTTTGCCCAAACTGGCCATGAAACTACTGGGGGATGGCGCGATGCACC
TGGTGGAGAATATGCTTGGGGATATTGCTTTATAAGCGAAATTAGCCCTC
CGTCCCCCTACTGTAATCTTAACTATCCATGTCGAGGGAAGTACTATGGC
CGAGGTCCAATTCAACTCACTTGGAATTACAATTACTTACGGTGCGGAGA
AGACCTAGGGCTAGGAGAGGAGTTGTTGAACAATCCAGACCTTCTTGCTA
CTGATCCAGTACTATCATTCAAGTCAGCAATCTGGTTCTGGATGACCGCA
CAGCCACCAAAGCCATCATGCCACGAAGTCATTACCGACGAATGGAAACC
ATCAGCAAATGACGTAAACGCCGGCCGGCTTCCGGGATACGGTCTAACCA
CAAATATAATCAACGGTGGAATTGAATGTGGCCAAGGTTGGAATGACGCT
GTACGTAACCGTATTGGGTTCTTTAGCACTTTCTGTGGCAAGTTTGGGAT
TCAGCCTGGTTTACATCTTGATTGCTACCACAACAGCCTTTTGGCCTATT
CTGATGGCACGATCTATGTGATCATCATGATCAACGTTTTAGTAAAATAA
GCTTAATAAAAGCTACCTAATTAAAAACTTTAAAAGTCCAACTTTGTAGG
GTGGACACCTAAGTTGTTTCCCTTCTTTATGGAAATAAATTTAAATAAAA
CGGGATTCAACCATGGGATCAATGAATTCTTCCC
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