DY257785

Overview
NameDY257785
Unique NameDY257785
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1084
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257785 vs. ExPASy Swiss-Prot
Match: CHIP_TOBAC (Acidic endochitinase P OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 6.677e-60
Identity = 117/235 (49.79%), Postives = 145/235 (61.70%), Query Frame = 3
Query:  177 LGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGLHLDCYH 881
            +G I++ ++F ++L  RND RCPA GFYTYDAFI AA +FP FG SG++T R +EIAAFF QT HETTGG   A    +  GYCF+ +                +YYGRGPIQLT   NY +                  ATD  +SFK+AIWFWMT Q  KPS H+VI   W PSA D +A R PG G+ TNIINGGIECG G N AV +RIG++  +CG   + PG +LDCY+
Sbjct:   27 IGSIVTNDLFNEMLKNRNDGRCPANGFYTYDAFIAAANSFPGFGTSGDDTARRKEIAAFFGQTSHETTGGSLSAE--PFTGGYCFVRQNDQSD-----------RYYGRGPIQLTNQNNYEKAGNAIRQDLVNNPDLV--ATDATISFKTAIWFWMTPQDNKPSSHDVIIGSWTPSAADQSANRAPGCGVITNIINGGIECGVGPNAAVEDRIGYYRRYCGMLNVAPGDNLDCYN 246          
BLAST of DY257785 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 4.785e-58
Identity = 107/233 (45.92%), Postives = 140/233 (60.09%), Query Frame = 3
Query:  192 SREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCN----LNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPP-KPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGLHLDC 875
            +  MFE +LP RN+  CP +GFYTYDA+  A + +P FG +G++  R RE+AAFFAQT  ET+G         + WGYC ++E++P S YC+     +YPC   YYGRGP+QL WNYNY  C                 ATDPVLSF++A+WFWM       PSCHEVIT EW PS  D+ AGR PG+G+ TNII  G EC +      +NRI ++  +C    + PG +L C
Sbjct:   68 TESMFEQMLPNRNNDSCPGKGFYTYDAYFVATEFYPGFGMTGDDDTRKRELAAFFAQTSQETSGRSIIGEDAPFTWGYCLVNELNPNSDYCDPKTKSSYPCVADYYGRGPLQLRWNYNYGEC--GNYLGQNLLDEPEKVATDPVLSFEAALWFWMNPHSTGAPSCHEVITGEWSPSEADIEAGRKPGFGMLTNIITNGGECTKDGKTRQQNRIDYYLRYCDMLQVDPGDNLYC 298          
BLAST of DY257785 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSJ (Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 1.033e-52
Identity = 109/262 (41.60%), Postives = 151/262 (57.63%), Query Frame = 3
Query:  108 ARNCGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCR-GK-YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQ-PPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGLHLDCY 878
            +R+ G   V     T  G     +  +++ + FE +LP+R+D  CPARGFY Y AF+ AA AFPAF  +G+   R RE+AAF AQT H T+       GG Y+WGYC+       S +C  N  +PC  GK Y+ RGP+Q+ +NYNY                    ATDP ++FK+A+W WMTA+ P +PS H V+T +W P+  D  AGR PGYGLTTNI+ GG++C  G   A  +R+ F+  +C   G+  G +LDC+
Sbjct:   74 SRDGGDDDVAAVLLTAPGGGRAGVASVVTSDQFERMLPHRDDAACPARGFYAYRAFVAAAGAFPAFAATGDADTRKREVAAFLAQTSHATS-------GGPYSWGYCYKEVKGATSDFCVPNARWPCAPGKAYHARGPMQIAYNYNY--GAAGEAIGADLLGNPELVATDPTVAFKTALWLWMTARSPSQPSPHAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQCAGGNGGA--DRVAFYKRYCDVLGVGYGPNLDCF 324          
BLAST of DY257785 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSI (Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 1.033e-52
Identity = 109/262 (41.60%), Postives = 151/262 (57.63%), Query Frame = 3
Query:  108 ARNCGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCR-GK-YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQ-PPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGLHLDCY 878
            +R+ G   V     T  G     +  +++ + FE +LP+R+D  CPARGFY Y AF+ AA AFPAF  +G+   R RE+AAF AQT H T+       GG Y+WGYC+       S +C  N  +PC  GK Y+ RGP+Q+ +NYNY                    ATDP ++FK+A+W WMTA+ P +PS H V+T +W P+  D  AGR PGYGLTTNI+ GG++C  G   A  +R+ F+  +C   G+  G +LDC+
Sbjct:   74 SRDGGDDDVAAVLLTAPGGGRAGVASVVTSDQFERMLPHRDDAACPARGFYAYRAFVAAAGAFPAFAATGDADTRKREVAAFLAQTSHATS-------GGPYSWGYCYKEVKGATSDFCVPNARWPCAPGKAYHARGPMQIAYNYNY--GAAGEAIGADLLGNPELVATDPTVAFKTALWLWMTARSPSQPSPHAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQCAGGNGGA--DRVAFYKRYCDVLGVGYGPNLDCF 324          
BLAST of DY257785 vs. ExPASy Swiss-Prot
Match: CHIT_AVESA (Endochitinase (Fragments) OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 6.926e-49
Identity = 103/240 (42.92%), Postives = 133/240 (55.42%), Query Frame = 3
Query:  177 LGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGLHLDCYHNSLLA 896
            +  +IS  +FE +L +R        GFYTYDAFI AAK+FPAF  +G+  +R RE+AAF AQT HETTGGW  AP G Y  G                       Y+GRGPIQ+++NYNY                     +D  + FK+A+WFWMT Q PKPS H+VIT  W PS+ D  AGR+PGYG+ TNII+GG+ECG+G    V +RIG++             +LDCY+    A
Sbjct:    1 VSSVISSSLFEKMLLHR--------GFYTYDAFIAAAKSFPAFATTGSTDVRKREVAAFLAQTSHETTGGWPTAPDGPYELG-------------------STSDYFGRGPIQISYNYNYGAAGKAIGVDLLRNPDLV--TSDNTVEFKTALWFWMTPQSPKPSSHDVITGRWSPSSTDKAAGRVPGYGVLTNIIDGGVECGKGQESHVADRIGYYKD-----------NLDCYNQKPFA 200          
BLAST of DY257785 vs. ExPASy Swiss-Prot
Match: CHI6_ORYSJ (Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht6 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.550e-32
Identity = 89/259 (34.36%), Postives = 125/259 (48.26%), Query Frame = 3
Query:  117 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSP-YC---NLNYPC-RGK-YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGLHLDC 875
            CG+G   G  D    T+   +  I++ E F  L+   +D  C A+GFYT DAF+ AA  +P+FG +G+     REIAAFFA   HET               +C+I EI  PS  YC   +  +PC  GK YYGRGP+Q++WN+NY                    A  PVL+F++A+W+W        + H+                   G+G T   ING +EC      AV NR+ ++  FC +FG+ PG +L C
Sbjct:   49 CGTGCQAGPCDVP-ATNDVSVASIVTPEFFAALVAQADD-GCAAKGFYTRDAFLTAAGGYPSFGRTGSVDDSKREIAAFFAHANHETI-------------KFCYIEEIDGPSKNYCDETSTQWPCMAGKGYYGRGPLQISWNFNY--GPAGQSIGFDGLGDPDAVARSPVLAFQTALWYWTN------NVHDAFVSG-------------QGFGATIRAINGALECDGKNPTAVSNRVAYYQQFCQQFGVDPGSNLTC 271          
BLAST of DY257785 vs. ExPASy Swiss-Prot
Match: AGI_URTDI (Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE=1 SV=3)

HSP 1 Score: 137.887 bits (346), Expect = 1.005e-31
Identity = 85/243 (34.98%), Postives = 130/243 (53.50%), Query Frame = 3
Query:  150 TGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEIS-PPSPYC-NLNYPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWND-AVR-NRIGFFSTFCGKFGIQPG 860
            +G+ T       +++  +F+ +  +R D  CP++GFY+Y +F+ AA++FPAFG  G+   R RE+AAF A     T+G   D     +AWG C I+  +   + +C + ++PC    KY  RGPIQLT N+NY                      DP++SFK+A+WFWM+    KPSCH+++      +AN   A R+P  G+  NII+       G +D AVR + IGF+  +C   G+  G
Sbjct:  121 SGNSTANSIGNVVVTEPLFDQMFSHRKD--CPSQGFYSYHSFLVAAESFPAFGTIGDVATRKREVAAFLAHISQATSGERSDVE-NPHAWGLCHINTTTVTENDFCTSSDWPCAAGKKYSPRGPIQLTHNFNY--GLAGQAIGEDLIQNPDLVEKDPIISFKTALWFWMSQHDNKPSCHDIVL-----NANSA-ANRIPNKGVIGNIISRAF----GHDDFAVRSSSIGFYKRYCDMLGVSYG 348          
BLAST of DY257785 vs. ExPASy Swiss-Prot
Match: CHIP_BETVU (Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.111e-30
Identity = 91/268 (33.96%), Postives = 118/268 (44.03%), Query Frame = 3
Query:  114 NCGSGVVCGERDT-----------GHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWR-DAPGGEYAWGYCFISEISPPSPYCNLNYPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGLHLDC 875
            NC SG   G   T           G G  G  +  I+S+  F+ ++  +    CP + FYT  AF+ A    P FGN G+     REIAAFFA   HETT     +   G+    YC   + +         YPC    KYYGRGP+QL+WNYNY                    ATD   SFK+A+WFWMT      + H V+                 G+G TT  ING +EC     D   +RI F+  +C  FG+ PG +L C
Sbjct:   55 NCQSGPCEGGTPTTPTTPTTPTTPGTGGGGSSVSDIVSQAFFDGIIG-QAAASCPGKNFYTRAAFLSAVD--PKFGNEGSSDDNKREIAAFFAHISHETTNLCHIEERDGDVGDAYCDQDKAA--------QYPCAAGKKYYGRGPLQLSWNYNY--ALAGQAIGFDGLGNPEKVATDVNTSFKAAMWFWMT------NVHSVMNQ---------------GFGATTKAINGALECNGQNQDQANDRIQFYKKYCADFGVAPGDNLTC 288          
BLAST of DY257785 vs. ExPASy Swiss-Prot
Match: CHIB_MAIZE (Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 4.221e-30
Identity = 84/264 (31.82%), Postives = 120/264 (45.45%), Query Frame = 3
Query:  117 CGSGVVCGERDTGHGTDGG-----ELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCN---LNYPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRN-RIGFFSTFCGKFGIQPGLHLDC 875
            CG G   G   +G G  G       +  +++   F  +        C  + FYT  AF+ A K +P F + G++    REIAAFFA   HET               +C+ISEI+  + YC+     +PC    KYYGRGP+Q++WNYNY                    A D V++FK+A+WFWM       S H V+                 G+G TT  +   +ECG G N A  N R+G++  +C + G+ PG +L C
Sbjct:   44 CGDGCQSGPCRSGRGGGGSGGGGANVASVVTSSFFNGIKNQAGS-GCEGKNFYTRSAFLSAVKGYPGFAHGGSQVQGKREIAAFFAHATHET-------------GHFCYISEINKSNAYCDPTKRQWPCAAGQKYYGRGPLQISWNYNY--GPAGRAIGFDGLGDPGRVARDAVVAFKAALWFWMN------SVHGVVPQ---------------GFGATTRAMQRALECG-GNNPAQMNARVGYYRQYCRQLGVDPGPNLTC 269          
BLAST of DY257785 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 4.221e-30
Identity = 84/258 (32.56%), Postives = 117/258 (45.35%), Query Frame = 3
Query:  120 GSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC---NLNYPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRN-RIGFFSTFCGKFGIQPGLHLDC 875
            G G   G    G G+ G  +  +++   F  +        C  + FYT  AF+ A  A+P F + G E    REIAAFFA   HET               +C+ISEI+  + YC   N  +PC    KYYGRGP+Q++WNYNY                    A D V++FK+A+WFWM                     N+V+     G+G T   ING +EC  G N A  N R+G++  +C +  + PG +L C
Sbjct:   61 GGGGGGGGGGGGGGSGGANVANVVTDAFFNGIKNQAGS-GCEGKNFYTRSAFLSAVNAYPGFAHGGTEVEGKREIAAFFAHVTHET-------------GHFCYISEINKSNAYCDASNRQWPCAAGQKYYGRGPLQISWNYNY--GPAGRDIGFNGLADPNRVAQDAVIAFKTALWFWM---------------------NNVHGVMPQGFGATIRAINGALEC-NGNNPAQMNARVGYYKQYCQQLRVDPGPNLIC 280          
The following BLAST results are available for this feature:
BLAST of DY257785 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHIP_TOBAC6.677e-6049.79Acidic endochitinase P OS=Nicotiana tabacum PE=1 S... [more]
CHI8_POPTR4.785e-5845.92Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 ... [more]
CHI7_ORYSJ1.033e-5241.60Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI7_ORYSI1.033e-5241.60Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 ... [more]
CHIT_AVESA6.926e-4942.92Endochitinase (Fragments) OS=Avena sativa PE=1 SV=... [more]
CHI6_ORYSJ1.550e-3234.36Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht... [more]
AGI_URTDI1.005e-3134.98Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE... [more]
CHIP_BETVU1.111e-3033.96Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 P... [more]
CHIB_MAIZE4.221e-3031.82Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1[more]
CHIA_MAIZE4.221e-3032.56Endochitinase A OS=Zea mays PE=1 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAB1BG05ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257785 ID=DY257785; Name=DY257785; organism=Citrus clementina; type=EST; length=1084bp
GACACCAAGCAGAGGATAATTGATATCATAACTGTTGCTTTCAAATGAGG
CTTATTGCGTCCTTACTAGTTTTCTCTCTAGTTTTATCTTTCGTACTAGG
AGGCTCAGCACGGAATTGTGGAAGCGGCGTTGTGTGCGGTGAACGTGATA
CCGGCCACGGGACGGATGGCGGTGAACTGGGCAAGATCATCTCAAGGGAG
ATGTTTGAAGACTTGCTTCCGTATAGAAATGATGTACGATGCCCTGCCAG
AGGCTTCTACACTTATGATGCTTTTATAGAGGCAGCCAAAGCTTTTCCAG
CCTTTGGTAACTCTGGAAATGAAACCATGCGTACAAGAGAAATTGCTGCC
TTTTTTGCCCAAACTGGCCATGAAACTACTGGGGGATGGCGCGATGCACC
TGGTGGAGAATATGCTTGGGGATATTGCTTTATAAGCGAAATTAGCCCTC
CGTCCCCCTACTGTAATCTTAACTATCCATGTCGAGGGAAGTACTATGGC
CGAGGTCCAATTCAACTCACTTGGAATTACAATTACTTACGGTGCGGAGA
AGACCTAGGGCTAGGAGAGGAGTTGTTGAACAATCCAGACCTTCTTGCTA
CTGATCCAGTACTATCATTCAAGTCAGCAATCTGGTTCTGGATGACCGCA
CAGCCACCAAAGCCATCATGCCACGAAGTCATTACCGACGAATGGAAACC
ATCAGCAAATGACGTAAACGCCGGCCGGCTTCCGGGATACGGTCTAACCA
CAAATATAATCAACGGTGGAATTGAATGTGGCCAAGGTTGGAATGACGCT
GTACGTAACCGTATTGGGTTCTTTAGCACTTTCTGTGGCAAGTTTGGGAT
TCAGCCTGGTTTACATCTTGATTGCTACCACAACAGCCTTTTGGCCTATT
CTGATGGCACGATCTATGTGATCATCATGATCAACGTTTTAGTAAAATAA
GCTTAATAAAAGCTACCTAATTAAAAACTTTAAAAGTCCAACTTTGTAGG
GTGGACACCTAAGTTGTTTCCCTTCTTTATGGAAATAAATTTAAATAAAA
CGGGATTCAACCATGGGATCAATGAATTCTTCCC
back to top