DY257785

Overview
NameDY257785
Unique NameDY257785
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1084
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257785 vs. ExPASy Swiss-Prot
Match: CHI4_BRANA (Basic endochitinase CHB4 OS=Brassica napus PE=1 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 3.574e-29
Identity = 89/263 (33.84%), Postives = 122/263 (46.39%), Query Frame = 3
Query:  117 CGSGVVCGERDTGHGTD----GGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPS-PYC---NLNYPCR-GK-YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGLHLDC 875
            CG+G   G   +  GT     GG +G I+++  F  ++       C  + FYT D+FI AA  FP F NS    +  REIA  FA   HET               +C+I EI+  S  YC   N  YPC  GK Y+GRGPIQL+WNYNY  C                 +++P ++F++ +WFWM                     N V      G+G T   IN G+EC  G + AV  RI ++  +CG+ G+ PG +L C
Sbjct:   48 CGTGCRSGPCRSPGGTPSPPGGGSVGSIVTQAFFNGIINQAGG-GCAGKNFYTRDSFINAANTFPNFANS----VTRREIATMFAHFTHET-------------GHFCYIEEINGASRDYCDENNRQYPCAPGKGYFGRGPIQLSWNYNYGAC--GQSLNLNLLGQPELVSSNPTVAFRTGLWFWM---------------------NSVRPVLNQGFGATIRAIN-GMECNGGNSGAVNARIRYYRDYCGQLGVDPGPNLSC 268          
BLAST of DY257785 vs. ExPASy Swiss-Prot
Match: CHIT_DIOJA (Acidic endochitinase OS=Dioscorea japonica PE=1 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 8.802e-28
Identity = 86/255 (33.73%), Postives = 121/255 (47.45%), Query Frame = 3
Query:  117 CGSGVVCGER-DTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDA-VRNRIGFFSTFCGKFGIQPGLHLDC 875
            CG G   G   D   G     +  I+++E F D +  +    CP + FYT   F+EA  A+P FG    +  R REIAA+FA   HET           +A  YC  S+  P    CN N     +Y+GRGP+QL+WNYNY+                     DP++SFK+++WFW+     +     VI D   P+          G+G T  IINGG EC  G N A +  R+G++  +C + G+ PG +L C
Sbjct:   25 CGPGCQAGPCWDPCEGDGTLTVSDIVTQE-FWDGIASQAAANCPGKSFYTRSNFLEAVSAYPGFGTKCTDEDRKREIAAYFAHVTHETGHLCYIEERDGHANNYCQESQQYP----CNPN----KEYFGRGPMQLSWNYNYI--DAGKELHFDGLNDPDIVGRDPIISFKTSLWFWI-----RKGVQYVILD---PN---------QGFGATIRIINGGQEC-DGHNTAQMMARVGYYQEYCAQLGVSPGNNLPC 250          
BLAST of DY257785 vs. ExPASy Swiss-Prot
Match: CHI5_ORYSJ (Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht5 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.501e-27
Identity = 85/268 (31.72%), Postives = 118/268 (44.03%), Query Frame = 3
Query:  117 CGSGVVCGERDTGHGTDGGELG---------KIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPS-PYCNLN---YPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGLHLDC 875
            C SG   G    G G  GG  G         + +  E F + +  +    C  + FYT  +F+ AA ++  F          REIAAFFA   HET                C+I+EI+  S  YC+ N   +PC+   KYYGRGP+Q++WNYNY                    A DP +SFK+A+WFWM                     N+V+   L G+G T   ING +EC      AV  R+ ++  +C +FG+ PG +L C
Sbjct:   57 CRSGPCYGGGGGGGGGGGGGGGGGGGSGVSVESVVTEAFFNGIKNQAPNGCAGKNFYTRQSFLNAAHSYSGFARDRTNDDSKREIAAFFAHVTHETGH-------------MCYINEINGASMDYCDKNNKQWPCQPGKKYYGRGPLQISWNYNY--GPAGQNIGFDGLRDPDRVAQDPTISFKTALWFWM---------------------NNVHQVMLQGFGATIRAINGALECNGKNPGAVNARVNYYKDYCRQFGVDPGGNLYC 288          
BLAST of DY257785 vs. ExPASy Swiss-Prot
Match: CHI4_ORYSJ (Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 1.660e-26
Identity = 72/218 (33.03%), Postives = 104/218 (47.71%), Query Frame = 3
Query:  240 CPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPS-PYC---NLNYPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGLHLDC 875
            C  + FYT  +F+ AA+++  F N        REIAAFFA   HET                C+I+EI+  +  YC   N  +PC+   KYYGRGP+Q++WN+NY                    A DP +SFK+A+WFWM       + H+V++                G+G T   ING +EC      AV  R+ ++  +C +FG+ PG +L C
Sbjct:  104 CAGKSFYTRQSFLNAARSYSGFANDRTNDDSKREIAAFFAHVTHETGH-------------MCYINEINGANMDYCDKSNKQWPCQPGKKYYGRGPLQISWNFNY--GPAGKNIGFDGLRDPDKVAQDPTISFKTALWFWMN------NVHQVMSQ---------------GFGATIRAINGALECNGKNPGAVNARVNYYKDYCRQFGVSPGGNLYC 285          
BLAST of DY257785 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 5.904e-24
Identity = 78/260 (30.00%), Postives = 113/260 (43.46%), Query Frame = 3
Query:  117 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPS-PYCN----LNYPCRGK--YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGLHLDC 875
            CG+G   G   T        +   I    F + +  + D  C  + FYT DAF+ A  ++  FG  G+E    REIAA FA   HET               +C+I EI   S  YC+      YPC     Y+GRGPIQL+WN+NY                    + D V+SFK+A+W+WM  Q  +P  ++                   G+G T   ING +EC       V+ R+ +++ +C + G+  G +L C
Sbjct:   47 CGTGCQQGPCTTASPPPSNNVNADILTADFLNGIIDQADSGCAGKNFYTRDAFLSALNSYTDFGRVGSEDDSKREIAAAFAHFTHET-------------GHFCYIEEIDGASKDYCDEESIAQYPCSSSKGYHGRGPIQLSWNFNY--GPAGSANNFDGLGAPETVSNDVVVSFKTALWYWM--QHVRPVINQ-------------------GFGATIRAINGALECDGANPTTVQARVNYYTEYCRQLGVATGDNLTC 270          
BLAST of DY257785 vs. ExPASy Swiss-Prot
Match: CHI4_ARAHY (Endochitinase 4 (Fragment) OS=Arachis hypogaea PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 6.771e-12
Identity = 30/46 (65.22%), Postives = 37/46 (80.43%), Query Frame = 3
Query:  642 MTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIEC 779
            MT Q  KPSCH+VIT+ W+P+A D  AGR PGYG+ TNIINGG++C
Sbjct:    1 MTPQGNKPSCHDVITNAWRPTATDSAAGRAPGYGVITNIINGGLDC 46          
The following BLAST results are available for this feature:
BLAST of DY257785 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI4_BRANA3.574e-2933.84Basic endochitinase CHB4 OS=Brassica napus PE=1 SV... [more]
CHIT_DIOJA8.802e-2833.73Acidic endochitinase OS=Dioscorea japonica PE=1 SV... [more]
CHI5_ORYSJ1.501e-2731.72Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_ORYSJ1.660e-2633.03Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_PHAVU5.904e-2430.00Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE... [more]
CHI4_ARAHY6.771e-1265.22Endochitinase 4 (Fragment) OS=Arachis hypogaea PE=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1BG05ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257785 ID=DY257785; Name=DY257785; organism=Citrus clementina; type=EST; length=1084bp
GACACCAAGCAGAGGATAATTGATATCATAACTGTTGCTTTCAAATGAGG
CTTATTGCGTCCTTACTAGTTTTCTCTCTAGTTTTATCTTTCGTACTAGG
AGGCTCAGCACGGAATTGTGGAAGCGGCGTTGTGTGCGGTGAACGTGATA
CCGGCCACGGGACGGATGGCGGTGAACTGGGCAAGATCATCTCAAGGGAG
ATGTTTGAAGACTTGCTTCCGTATAGAAATGATGTACGATGCCCTGCCAG
AGGCTTCTACACTTATGATGCTTTTATAGAGGCAGCCAAAGCTTTTCCAG
CCTTTGGTAACTCTGGAAATGAAACCATGCGTACAAGAGAAATTGCTGCC
TTTTTTGCCCAAACTGGCCATGAAACTACTGGGGGATGGCGCGATGCACC
TGGTGGAGAATATGCTTGGGGATATTGCTTTATAAGCGAAATTAGCCCTC
CGTCCCCCTACTGTAATCTTAACTATCCATGTCGAGGGAAGTACTATGGC
CGAGGTCCAATTCAACTCACTTGGAATTACAATTACTTACGGTGCGGAGA
AGACCTAGGGCTAGGAGAGGAGTTGTTGAACAATCCAGACCTTCTTGCTA
CTGATCCAGTACTATCATTCAAGTCAGCAATCTGGTTCTGGATGACCGCA
CAGCCACCAAAGCCATCATGCCACGAAGTCATTACCGACGAATGGAAACC
ATCAGCAAATGACGTAAACGCCGGCCGGCTTCCGGGATACGGTCTAACCA
CAAATATAATCAACGGTGGAATTGAATGTGGCCAAGGTTGGAATGACGCT
GTACGTAACCGTATTGGGTTCTTTAGCACTTTCTGTGGCAAGTTTGGGAT
TCAGCCTGGTTTACATCTTGATTGCTACCACAACAGCCTTTTGGCCTATT
CTGATGGCACGATCTATGTGATCATCATGATCAACGTTTTAGTAAAATAA
GCTTAATAAAAGCTACCTAATTAAAAACTTTAAAAGTCCAACTTTGTAGG
GTGGACACCTAAGTTGTTTCCCTTCTTTATGGAAATAAATTTAAATAAAA
CGGGATTCAACCATGGGATCAATGAATTCTTCCC
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