DY257794

Overview
NameDY257794
Unique NameDY257794
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length851
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257794 vs. ExPASy Swiss-Prot
Match: HBPA_CASGL (Hemoglobin A OS=Casuarina glauca GN=SYMA PE=2 SV=3)

HSP 1 Score: 149.828 bits (377), Expect = 1.778e-35
Identity = 78/150 (52.00%), Postives = 97/150 (64.67%), Query Frame = 2
Query:  272 AFTEEQEALVVKSWNAMKKNSGELALKFFLRIFEIAPSAKKLFTFLKDSDIPVEQNPKLKPHATTVFVMTCESAVQLRKAGKVTVRESNLKDLGATHFKYGVADEHFEVTKYALLETIKEAVPEMWSPELKNAWAEAYDQLAAAIKTEMK 721
            A TE QEAL+ +SW  +K+N    +L+ F  I E AP +K +F+FLKDS+   E NPKLK HA  +F   CESA +LR+ G+     + LK LG+ H K  + D HFEV K ALL TIKEAV E WS E+  AW EAY+QL A IK EMK
Sbjct:    2 ALTERQEALLKQSWEVLKQNIPGHSLRLFALIIEAAPESKYVFSFLKDSNEIPENNPKLKAHAAVIFKTICESATELRQKGQAVWDNNTLKRLGSIHLKNKITDPHFEVMKGALLGTIKEAVKENWSDEMGCAWTEAYNQLVATIKAEMK 151          
BLAST of DY257794 vs. ExPASy Swiss-Prot
Match: LGB2_LUPLU (Leghemoglobin-2 OS=Lupinus luteus PE=1 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 3.471e-31
Identity = 72/149 (48.32%), Postives = 94/149 (63.09%), Query Frame = 2
Query:  272 AFTEEQEALVVKSWNAMKKNSGELALKFFLRIFEIAPSAKKLFTFLKDSDIPVEQNPKLKPHATTVFVMTCESAVQLRKAGKVTVRESNLKDLGATHFKYGVADEHFEVTKYALLETIKEAVPEMWSPELKNAWAEAYDQLAAAIKTEM 718
            A TE Q ALV  SW     N  +   +FF+ + EIAP+AK LF+FLK +    + NP+L+ HA  VF +  E+A+QL+  G V V ++ LK+LG+ H   GVAD HF V K A+L+TIKE V   WS EL +AW  AYD+LA  IK EM
Sbjct:    3 ALTESQAALVKSSWEEFNANIPKHTHRFFILVLEIAPAAKDLFSFLKGTSEVPQNNPELQAHAGKVFKLVYEAAIQLQVTG-VVVTDATLKNLGSVHVSKGVADAHFPVVKEAILKTIKEVVGAKWSEELNSAWTIAYDELAIVIKKEM 150          
BLAST of DY257794 vs. ExPASy Swiss-Prot
Match: LGB_CANLI (Leghemoglobin OS=Canavalia lineata PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 7.732e-31
Identity = 75/149 (50.34%), Postives = 96/149 (64.43%), Query Frame = 2
Query:  272 AFTEEQEALVVKSWNAMKKNSGELALKFFLRIFEIAPSAKKLFTFLKDSDIPVEQNPKLKPHATTVFVMTCESAVQLRKAGKVTVRESNLKDLGATHFKYGVADEHFEVTKYALLETIKEAVPEMWSPELKNAWAEAYDQLAAAIKTEM 718
            AF+E+QE+LV  SW A K+N    +  F+  I E AP+A+ +F+FL +   P   NPKLK HA  VF MT +SAVQLR  G+V + +  L   G+ H + GV D HF V K ALL+T KEAV + W+ EL NAW  AYD+LAAAIK  M
Sbjct:    3 AFSEKQESLVKSSWEAFKQNVPHHSAVFYTLILEKAPAAQNMFSFLSNGVDP--NNPKLKAHAEKVFKMTVDSAVQLRAKGEVVLADPTL---GSVHVQKGVLDPHFLVVKEALLKTFKEAVGDKWNDELGNAWEVAYDELAAAIKKAM 146          
BLAST of DY257794 vs. ExPASy Swiss-Prot
Match: LGB2_MEDTR (Leghemoglobin 2 OS=Medicago truncatula GN=LB2 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 5.011e-30
Identity = 77/148 (52.03%), Postives = 94/148 (63.51%), Query Frame = 2
Query:  275 FTEEQEALVVKSWNAMKKNSGELALKFFLRIFEIAPSAKKLFTFLKDSDIPVEQNPKLKPHATTVFVMTCESAVQLRKAGKVTVRESNLKDLGATHFKYGVADEHFEVTKYALLETIKEAVPEMWSPELKNAWAEAYDQLAAAIKTEM 718
            FTE+QEALV  SW   K+N G   L F+  I E AP+AK +F+FLKD+   V+ +PKL+ HA  VF M  +SAVQLR  G V + ++ L   GA H + GV D HF V K ALL+TIKE   + WS EL  AW  AYD LAAAIK  M
Sbjct:    3 FTEKQEALVNSSWELFKQNPGNSVL-FYTIILEKAPAAKGMFSFLKDT-AGVQDSPKLQSHAEKVFGMVRDSAVQLRATGGVVLGDATL---GAIHIQKGVVDPHFVVVKEALLKTIKEVSGDKWSEELSTAWEVAYDALAAAIKKAM 145          
BLAST of DY257794 vs. ExPASy Swiss-Prot
Match: LGB4_MEDSA (Leghemoglobin OS=Medicago sativa GN=LB3 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 8.548e-30
Identity = 73/148 (49.32%), Postives = 97/148 (65.54%), Query Frame = 2
Query:  275 FTEEQEALVVKSWNAMKKNSGELALKFFLRIFEIAPSAKKLFTFLKDSDIPVEQNPKLKPHATTVFVMTCESAVQLRKAGKVTVRESNLKDLGATHFKYGVADEHFEVTKYALLETIKEAVPEMWSPELKNAWAEAYDQLAAAIKTEM 718
            FT +QEALV  SW + K+N    ++ F+  I E AP+AK +F+FLKDS   V+ +P+L+ HA  VF M  +SAVQLR  G+V + ++ L   G+ H + GV D HF V K ALL+TIKEAV + WS EL  +W  AYD LA+AIK  M
Sbjct:    3 FTADQEALVNSSWESFKQNLPGYSVFFYTTILEKAPAAKGMFSFLKDS-AGVQDSPQLQAHAEKVFGMVRDSAVQLRATGEVVLGDATL---GSIHIQKGVVDPHFVVVKEALLKTIKEAVGDKWSEELSTSWEVAYDGLASAIKKAM 146          
BLAST of DY257794 vs. ExPASy Swiss-Prot
Match: LGB3_PEA (Leghemoglobin Lb120-1 OS=Pisum sativum PE=2 SV=3)

HSP 1 Score: 130.568 bits (327), Expect = 1.116e-29
Identity = 77/148 (52.03%), Postives = 95/148 (64.19%), Query Frame = 2
Query:  275 FTEEQEALVVKSWNAMKKNSGELALKFFLRIFEIAPSAKKLFTFLKDSDIPVEQNPKLKPHATTVFVMTCESAVQLRKAGKVTVRESNLKDLGATHFKYGVADEHFEVTKYALLETIKEAVPEMWSPELKNAWAEAYDQLAAAIKTEM 718
            FTE+QEALV  SW   K+N     L F+  I + AP+AK +F+FLKDS   V  +PKL+ HA  VF M  +SA+QLR +G+V V ++ L   GA H + GV D HF V K ALLETIKEA  E WS EL  AW  AY+ LA+AIK  M
Sbjct:    3 FTEKQEALVNSSWELFKQNPSYSVL-FYTIILKKAPAAKGMFSFLKDS-AEVVDSPKLQAHAEKVFGMVHDSAIQLRASGEVVVGDATL---GAIHIQKGVVDPHFVVVKEALLETIKEASGEKWSEELSTAWEVAYEGLASAIKKAM 145          
BLAST of DY257794 vs. ExPASy Swiss-Prot
Match: LGB1_MEDSA (Leghemoglobin-1 OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.116e-29
Identity = 73/149 (48.99%), Postives = 96/149 (64.43%), Query Frame = 2
Query:  272 AFTEEQEALVVKSWNAMKKNSGELALKFFLRIFEIAPSAKKLFTFLKDSDIPVEQNPKLKPHATTVFVMTCESAVQLRKAGKVTVRESNLKDLGATHFKYGVADEHFEVTKYALLETIKEAVPEMWSPELKNAWAEAYDQLAAAIKTEM 718
            +FT++QEALV  SW A K+N    ++ F+  + E AP+AK LF+FLK+S   V+ +P+L+ HA  VF +  +SAVQLR  G V + ++ L   GA H + GV D HF V K ALL+TIKEA  + WS EL  AW  AYD LA AIK  M
Sbjct:    2 SFTDKQEALVNSSWEAFKQNLPRYSVFFYTVVLEKAPAAKGLFSFLKNS-AEVQDSPQLQAHAEKVFGLVRDSAVQLRATGGVVLGDATL---GAIHVRKGVVDPHFVVVKEALLKTIKEAAGDKWSEELNTAWEVAYDALATAIKKAM 146          
BLAST of DY257794 vs. ExPASy Swiss-Prot
Match: LGB3_MEDSA (Leghemoglobin-3 OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.904e-29
Identity = 75/148 (50.68%), Postives = 93/148 (62.84%), Query Frame = 2
Query:  275 FTEEQEALVVKSWNAMKKNSGELALKFFLRIFEIAPSAKKLFTFLKDSDIPVEQNPKLKPHATTVFVMTCESAVQLRKAGKVTVRESNLKDLGATHFKYGVADEHFEVTKYALLETIKEAVPEMWSPELKNAWAEAYDQLAAAIKTEM 718
            FT++QEALV  SW + K+N G   L F+  I E AP+AK +F+FLKDS   V+ +PKL+ HA  VF M  +SA QLR  G V + ++ L   GA H + GV D HF V K ALL+TIKE   + WS EL  AW  AYD LA AIK  M
Sbjct:    3 FTDKQEALVNSSWESFKQNPGNSVL-FYTIILEKAPAAKGMFSFLKDS-AGVQDSPKLQSHAEKVFGMVRDSAAQLRATGGVVLGDATL---GAIHIQKGVVDPHFAVVKEALLKTIKEVSGDKWSEELNTAWEVAYDALATAIKKAM 145          
BLAST of DY257794 vs. ExPASy Swiss-Prot
Match: LGB6_PEA (Leghemoglobin Lb120-34 OS=Pisum sativum PE=2 SV=3)

HSP 1 Score: 129.413 bits (324), Expect = 2.487e-29
Identity = 76/148 (51.35%), Postives = 95/148 (64.19%), Query Frame = 2
Query:  275 FTEEQEALVVKSWNAMKKNSGELALKFFLRIFEIAPSAKKLFTFLKDSDIPVEQNPKLKPHATTVFVMTCESAVQLRKAGKVTVRESNLKDLGATHFKYGVADEHFEVTKYALLETIKEAVPEMWSPELKNAWAEAYDQLAAAIKTEM 718
            FTE+QEALV  SW   K+N     L F+  I + AP+AK +F+FLKDS   V  +PKL+ HA  VF M  +SA+QLR +G+V + ++ L   GA H + GV D HF V K ALLETIKEA  E WS EL  AW  AY+ LA+AIK  M
Sbjct:    3 FTEKQEALVNSSWELFKQNPSYSVL-FYTIILKKAPAAKGMFSFLKDS-AEVVDSPKLQAHAEKVFGMVHDSAIQLRASGEVVLGDATL---GAIHIQKGVVDPHFVVVKEALLETIKEASGEKWSEELSTAWEVAYEGLASAIKKAM 145          
BLAST of DY257794 vs. ExPASy Swiss-Prot
Match: LGB2_SESRO (Leghemoglobin 2 OS=Sesbania rostrata GN=GLB2 PE=1 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 3.248e-29
Identity = 72/148 (48.65%), Postives = 95/148 (64.19%), Query Frame = 2
Query:  275 FTEEQEALVVKSWNAMKKNSGELALKFFLRIFEIAPSAKKLFTFLKDSDIPVEQNPKLKPHATTVFVMTCESAVQLRKAGKVTVRESNLKDLGATHFKYGVADEHFEVTKYALLETIKEAVPEMWSPELKNAWAEAYDQLAAAIKTEM 718
            FTE+QEALV  S+ A K+N    ++ F+  I E AP+AK +F+FLKDSD   + NP L+ HA  VF +  +SA QLR  G V + +++   LG+ H + GV D HF V K ALL+T+KEA    WS E+ NAW  AYD L+AAIK  M
Sbjct:    3 FTEKQEALVNASYEAFKQNLPGNSVLFYSFILEKAPAAKGMFSFLKDSDGVPQNNPSLQAHAEKVFGLVRDSAAQLRATGVVVLADAS---LGSVHVQKGVLDPHFVVVKEALLKTLKEAAGATWSDEVSNAWEVAYDGLSAAIKKAM 147          
The following BLAST results are available for this feature:
BLAST of DY257794 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
HBPA_CASGL1.778e-3552.00Hemoglobin A OS=Casuarina glauca GN=SYMA PE=2 SV=3[more]
LGB2_LUPLU3.471e-3148.32Leghemoglobin-2 OS=Lupinus luteus PE=1 SV=2[more]
LGB_CANLI7.732e-3150.34Leghemoglobin OS=Canavalia lineata PE=2 SV=1[more]
LGB2_MEDTR5.011e-3052.03Leghemoglobin 2 OS=Medicago truncatula GN=LB2 PE=2... [more]
LGB4_MEDSA8.548e-3049.32Leghemoglobin OS=Medicago sativa GN=LB3 PE=2 SV=1[more]
LGB3_PEA1.116e-2952.03Leghemoglobin Lb120-1 OS=Pisum sativum PE=2 SV=3[more]
LGB1_MEDSA1.116e-2948.99Leghemoglobin-1 OS=Medicago sativa PE=2 SV=1[more]
LGB3_MEDSA1.904e-2950.68Leghemoglobin-3 OS=Medicago sativa PE=2 SV=1[more]
LGB6_PEA2.487e-2951.35Leghemoglobin Lb120-34 OS=Pisum sativum PE=2 SV=3[more]
LGB2_SESRO3.248e-2948.65Leghemoglobin 2 OS=Sesbania rostrata GN=GLB2 PE=1 ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAB1CA02ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257794 ID=DY257794; Name=DY257794; organism=Citrus clementina; type=EST; length=851bp
GCTCCCTCAATTTTCTGCTCTGCATCTTGTGGCCATTCATAGTGTTGCTT
CAAAAGCTACAACCATGCTACTCTCAAATGATTCTGTCATCTACAAGTGT
GATACAAGGGATTTGAGTAAGATTTTTGCAACCTCAACGTCAAGAGTTAG
GCATCAACAATACGTGAATCTCTCATGGAAGATGAGGGATGGATCATTGA
AGGGTCTTTTTTGCACAGCTCCAAAATCAATCAGAAGTGTGAGGAGGAAC
AGCGGAAGCTTCAACGTGACTGCTTTTACAGAAGAGCAAGAGGCTCTAGT
GGTCAAATCTTGGAATGCCATGAAAAAAAATTCTGGGGAACTTGCTCTTA
AGTTCTTCTTGAGGATCTTTGAGATTGCACCATCAGCAAAGAAGCTGTTC
ACTTTTCTCAAAGATTCAGATATTCCTGTGGAGCAGAATCCGAAACTAAA
GCCCCATGCCACGACTGTCTTTGTTATGACGTGTGAATCGGCAGTGCAAC
TTAGAAAGGCTGGCAAAGTTACAGTGAGAGAGTCCAATCTAAAAGACTTG
GGAGCTACCCATTTCAAATACGGAGTTGCTGATGAACATTTTGAGGTGAC
AAAGTATGCATTGTTGGAGACCATAAAGGAAGCAGTACCTGAAATGTGGT
CACCAGAGTTGAAGAATGCTTGGGCGGAGGCTTATGATCAACTGGCTGCC
GCCATCAAAACTGAAATGAAGCCTCCTTCATAATTTGCTGATTGAATGTA
AAAGTGATGCTGTTTCATGGAAAAAAATAATATTGTAAAAATGTCATGTA
ATCATCAATTATCGAATATTGTGTTGATCTAATCTAAGATCCAGTTCTCT
C
back to top