DY257797

Overview
NameDY257797
Unique NameDY257797
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length845
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9981 contig Ccv1_Contig9981:4..848. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257797 vs. ExPASy Swiss-Prot
Match: NLTP_ELECO (Non-specific lipid-transfer protein OS=Eleusine coracana PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.674e-15
Identity = 38/91 (41.76%), Postives = 59/91 (64.84%), Query Frame = 2
Query:  113 ITCEQVTIWLTPCISYGVLGGAVQPACCD-GIRALNAASKTTEDRRTQCNC-VKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLDCSK 379
            I+C QV+  + PC++Y    GA   A C  G+R+LNAA++TT DRR  CNC +K  A+R+ GLN  + +++P  C  + PY ++  +DCS+
Sbjct:    2 ISCGQVSSAIGPCLAYARGAGAAPSASCQSGVRSLNAAARTTADRRAACNCSLKSAASRVSGLNAGKASSIPGRCGVRLPYAISASIDCSR 92          
BLAST of DY257797 vs. ExPASy Swiss-Prot
Match: NLTP1_SOLPN (Non-specific lipid-transfer protein 1 OS=Solanum pennellii GN=LTP1 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.309e-14
Identity = 37/92 (40.22%), Postives = 54/92 (58.70%), Query Frame = 2
Query:  113 ITCEQVTIWLTPCISY----GVLGGAVQPACCDGIRALNAASKTTEDRRTQCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLDCS 376
            +TC QVT  L PC+ Y    G LGG     CC G++ L  ++KTT DR+T C C+K  A  I G++ ++   +P +C+   PYK++   DCS
Sbjct:   25 LTCGQVTAGLAPCLPYLQGRGPLGG-----CCGGVKGLLGSAKTTADRKTACTCLKSAANAIKGIDLNKAAGIPSVCKVNIPYKISPSTDCS 111          
BLAST of DY257797 vs. ExPASy Swiss-Prot
Match: SCA_LILLO (Stigma/stylar cysteine-rich adhesin OS=Lilium longiflorum GN=SCA PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.233e-14
Identity = 39/89 (43.82%), Postives = 48/89 (53.93%), Query Frame = 2
Query:  113 ITCEQVTIWLTPCISYGVLGGAVQPACCDGIRALNAASKTTEDRRTQCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLDCSK 379
            ITC QV   LT C+ Y   GG + P CC G+R LN  +KTT DR+T CNC+K       GLN   V  +P  C    PY +    DC+K
Sbjct:   23 ITCGQVDSDLTSCLGYARKGGVIPPGCCAGVRTLNNLAKTTPDRQTACNCLKSLVNPSLGLNAAIVAGIPGKCGVNIPYPIRMQTDCNK 111          
BLAST of DY257797 vs. ExPASy Swiss-Prot
Match: NLTP1_SOLLC (Non-specific lipid-transfer protein 1 OS=Solanum lycopersicum GN=TSW12 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.233e-14
Identity = 37/92 (40.22%), Postives = 54/92 (58.70%), Query Frame = 2
Query:  113 ITCEQVTIWLTPCISY----GVLGGAVQPACCDGIRALNAASKTTEDRRTQCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLDCS 376
            +TC QVT  L PC+ Y    G LGG     CC G++ L  ++KTT DR+T C C+K  A  I G++ ++   +P +C+   PYK++   DCS
Sbjct:   25 LTCGQVTAGLAPCLPYLQGRGPLGG-----CCGGVKNLLGSAKTTADRKTACTCLKSAANAIKGIDLNKAAGIPSVCKVNIPYKISPSTDCS 111          
BLAST of DY257797 vs. ExPASy Swiss-Prot
Match: NLTP1_TOBAC (Non-specific lipid-transfer protein 1 OS=Nicotiana tabacum GN=LTP1 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.809e-14
Identity = 40/93 (43.01%), Postives = 53/93 (56.99%), Query Frame = 2
Query:  113 ITCEQVTIWLTPCISY----GVLGGAVQPACCDGIRALNAASKTTEDRRTQCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLDCSK 379
            ITC QVT  L PC++Y    G LG      CC G++AL  +++TTEDR+  C C+K  A  I G+N  +   LP  C    PYK++   DCSK
Sbjct:   25 ITCGQVTSNLAPCLAYLRNTGPLG-----RCCGGVKALVNSARTTEDRQIACTCLKSAAGAISGINLGKAAGLPSTCGVNIPYKISPSTDCSK 112          
BLAST of DY257797 vs. ExPASy Swiss-Prot
Match: NLTP3_PRUDU (Non-specific lipid-transfer protein 3 OS=Prunus dulcis PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.497e-14
Identity = 37/89 (41.57%), Postives = 53/89 (59.55%), Query Frame = 2
Query:  113 ITCEQVTIWLTPCISYGVLGGAVQPACCDGIRALNAASKTTEDRRTQCNCVKEGAARIP--GLNYDRVNTLPDICRSKCPYKLTHDLDC 373
            ++C QV   LTPCI+Y   GGA+ P+CC G+R+L + ++TT DR++ CNC+K+    IP    N      LP  C    PYK++   DC
Sbjct:   31 VSCGQVVNNLTPCINYVANGGALNPSCCTGVRSLYSLAQTTADRQSICNCLKQAVNGIPYTNANAGLAAGLPGKCGVNIPYKISPSTDC 119          
BLAST of DY257797 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLPN (Non-specific lipid-transfer protein 2 OS=Solanum pennellii GN=LTP2 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.485e-14
Identity = 38/93 (40.86%), Postives = 52/93 (55.91%), Query Frame = 2
Query:  113 ITCEQVTIWLTPCISY----GVLGGAVQPACCDGIRALNAASKTTEDRRTQCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLDCSK 379
            +TC QVT  L PC+ Y    G LGG     CC G++ L   ++TT DR+T C C+K  A+   GL+  +  +LP  C    PYK++   DCSK
Sbjct:   25 LTCGQVTSTLAPCLPYLMNRGPLGG-----CCGGVKGLLGQAQTTVDRQTACTCLKSAASSFTGLDLGKAASLPSTCSVNIPYKISPSTDCSK 112          
BLAST of DY257797 vs. ExPASy Swiss-Prot
Match: NLTP1_SORBI (Non-specific lipid-transfer protein 1 OS=Sorghum bicolor GN=LTP1 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.485e-14
Identity = 37/90 (41.11%), Postives = 52/90 (57.78%), Query Frame = 2
Query:  113 ITCEQVTIWLTPCISYGV-LGGAVQPACCDGIRALNAASKTTEDRRTQCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLDCSK 379
            I+C QV+  +  C+SY    G A    CC G+R+LN+A++TT DRR  CNC+K  A  I GLN     ++P  C    PY ++   DCS+
Sbjct:   27 ISCGQVSSAIALCLSYARGQGFAPSAGCCSGVRSLNSAARTTADRRAACNCLKNAARGISGLNAGNAASIPSKCGVSVPYTISTSTDCSR 116          
BLAST of DY257797 vs. ExPASy Swiss-Prot
Match: NLTP1_LENCU (Non-specific lipid-transfer protein 1 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.108e-13
Identity = 36/88 (40.91%), Postives = 50/88 (56.82%), Query Frame = 2
Query:  113 ITCEQVTIWLTPCISYGVLGGAVQPACCDGIRALNAASKTTEDRRTQCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLDCS 376
            I+C  V+  L PC++Y   G    P CC G++ LN A++TT DRR  CNC+K  A  I GL    V TLP  C  + PY ++   +C+
Sbjct:   27 ISCGTVSGALVPCLTYLKGGPGPSPQCCGGVKRLNGAARTTIDRRAACNCLKSSAGSISGLKPGNVATLPGKCGVRLPYTISTSTNCN 114          
BLAST of DY257797 vs. ExPASy Swiss-Prot
Match: NLTP1_ARATH (Non-specific lipid-transfer protein 1 OS=Arabidopsis thaliana GN=LTP1 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.108e-13
Identity = 37/89 (41.57%), Postives = 52/89 (58.43%), Query Frame = 2
Query:  113 ITCEQVTIWLTPCISYGVLGGAVQPACCDGIRALNAASKTTEDRRTQCNCVKEGAARI--PGLNYDRVNTLPDICRSKCPYKLTHDLDC 373
            ++C  V   L  CI Y + GG + PACC G++ LN+ +KTT DR+  CNC+ +GAAR    GLN  R   +P  C    PYK++   +C
Sbjct:   27 LSCGSVNSNLAACIGYVLQGGVIPPACCSGVKNLNSIAKTTPDRQQACNCI-QGAARALGSGLNAGRAAGIPKACGVNIPYKISTSTNC 114          
The following BLAST results are available for this feature:
BLAST of DY257797 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
NLTP_ELECO7.674e-1541.76Non-specific lipid-transfer protein OS=Eleusine co... [more]
NLTP1_SOLPN1.309e-1440.22Non-specific lipid-transfer protein 1 OS=Solanum p... [more]
SCA_LILLO2.233e-1443.82Stigma/stylar cysteine-rich adhesin OS=Lilium long... [more]
NLTP1_SOLLC2.233e-1440.22Non-specific lipid-transfer protein 1 OS=Solanum l... [more]
NLTP1_TOBAC3.809e-1443.01Non-specific lipid-transfer protein 1 OS=Nicotiana... [more]
NLTP3_PRUDU6.497e-1441.57Non-specific lipid-transfer protein 3 OS=Prunus du... [more]
NLTP2_SOLPN8.485e-1440.86Non-specific lipid-transfer protein 2 OS=Solanum p... [more]
NLTP1_SORBI8.485e-1441.11Non-specific lipid-transfer protein 1 OS=Sorghum b... [more]
NLTP1_LENCU1.108e-1340.91Non-specific lipid-transfer protein 1 OS=Lens culi... [more]
NLTP1_ARATH1.108e-1341.57Non-specific lipid-transfer protein 1 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1CA09ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257797 ID=DY257797; Name=DY257797; organism=Citrus clementina; type=EST; length=845bp
GATTGCATAAACCATAATTACAATGGCTGCTCAATTTCGAAAGGTGCCAT
TAACAGTGTCTATTGCAACAATGTTGTTGTTATTGTTGGCTCCCCTGAAT
GCAGCAACAACAATAACATGTGAGCAAGTGACAATCTGGCTGACACCATG
CATCAGCTATGGCGTATTGGGTGGGGCTGTTCAACCAGCTTGTTGTGATG
GCATTAGAGCTTTGAATGCTGCTTCAAAAACCACAGAAGATAGAAGGACC
CAATGTAATTGTGTGAAGGAAGGTGCTGCTAGGATCCCTGGTCTCAACTA
TGATCGTGTTAATACGCTTCCTGATATTTGTCGGAGTAAATGTCCTTATA
AACTTACACATGATCTTGATTGCTCTAAGTACGCCCTTAATTCTTATCTT
AGCTAGCTTGTTATTGCTTGTTTTCTTTTTATAATCTTCTCTGGCATATG
TGTATATATATGTTAAGATTAAATTATTTATATTTTTATTCAATAATTAC
CATCACAATATTAAGAAAAAATCTTAACACAATCTCTCGACCAATTAATT
TTTACCTTTTGGGTTTGATTTTATTGTAGGGTGAACTAAATCTGCAGTTT
GCACGGGCGGGGGTATCTGGTTTATTGATAAGTCACGAATGAAGTCTACA
AAGAGAATAAGGCTGCTACTTTTGGCTTATTGTCCTAAAAATATCTTCTA
TTACTCTAAAATAAAGCCTGAGATATTTTATTGGCATTTTGCATTTTACA
TTATTATACAAGTCATTCTAATGATATGTGTTGCAATGTAAACATATATG
ATATTTACGTGTGCAAAGTGAATGTCCTTTCTTTATTCTTATGGC
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