DY257801

Overview
NameDY257801
Unique NameDY257801
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1294
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1036 contig Ccv1_Contig1036:1..1294. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257801 vs. ExPASy Swiss-Prot
Match: QKI_FELCA (Protein quaking OS=Felis catus GN=QKI PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.016e-12
Identity = 43/97 (44.33%), Postives = 60/97 (61.86%), Query Frame = 3
Query:  567 PVVKRKITLDVPVDKYPNQFNFVGRILGPRGNSLKRV*AMTECMVFIRGRGSITDSIXXXXXXXXPGYDHLNEPLHV*EEAEFPEDIKNPAWIMLQQ 857
            P+V+ +  L VPV +YP+ FNFVGRILGPRG + K++ A T C + +RG+GS+ D          P ++HLNE LHV       ED +N A I L++
Sbjct:   78 PIVQLQEKLYVPVKEYPD-FNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHV---LITVEDAQNRAEIKLKR 170          
BLAST of DY257801 vs. ExPASy Swiss-Prot
Match: QKI_CHICK (Protein quaking OS=Gallus gallus GN=QKI PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 1.016e-12
Identity = 43/97 (44.33%), Postives = 60/97 (61.86%), Query Frame = 3
Query:  567 PVVKRKITLDVPVDKYPNQFNFVGRILGPRGNSLKRV*AMTECMVFIRGRGSITDSIXXXXXXXXPGYDHLNEPLHV*EEAEFPEDIKNPAWIMLQQ 857
            P+V+ +  L VPV +YP+ FNFVGRILGPRG + K++ A T C + +RG+GS+ D          P ++HLNE LHV       ED +N A I L++
Sbjct:   78 PIVQLQEKLYVPVKEYPD-FNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHV---LITVEDAQNRAEIKLKR 170          
BLAST of DY257801 vs. ExPASy Swiss-Prot
Match: QKI_CANFA (Protein quaking OS=Canis familiaris GN=QKI PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.016e-12
Identity = 43/97 (44.33%), Postives = 60/97 (61.86%), Query Frame = 3
Query:  567 PVVKRKITLDVPVDKYPNQFNFVGRILGPRGNSLKRV*AMTECMVFIRGRGSITDSIXXXXXXXXPGYDHLNEPLHV*EEAEFPEDIKNPAWIMLQQ 857
            P+V+ +  L VPV +YP+ FNFVGRILGPRG + K++ A T C + +RG+GS+ D          P ++HLNE LHV       ED +N A I L++
Sbjct:   78 PIVQLQEKLYVPVKEYPD-FNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHV---LITVEDAQNRAEIKLKR 170          
BLAST of DY257801 vs. ExPASy Swiss-Prot
Match: QKI_BOVIN (Protein quaking OS=Bos taurus GN=QKI PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.016e-12
Identity = 43/97 (44.33%), Postives = 60/97 (61.86%), Query Frame = 3
Query:  567 PVVKRKITLDVPVDKYPNQFNFVGRILGPRGNSLKRV*AMTECMVFIRGRGSITDSIXXXXXXXXPGYDHLNEPLHV*EEAEFPEDIKNPAWIMLQQ 857
            P+V+ +  L VPV +YP+ FNFVGRILGPRG + K++ A T C + +RG+GS+ D          P ++HLNE LHV       ED +N A I L++
Sbjct:   78 PIVQLQEKLYVPVKEYPD-FNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHV---LITVEDAQNRAEIKLKR 170          
BLAST of DY257801 vs. ExPASy Swiss-Prot
Match: QKIB_XENLA (Protein quaking-B OS=Xenopus laevis GN=qki-B PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.016e-12
Identity = 43/97 (44.33%), Postives = 60/97 (61.86%), Query Frame = 3
Query:  567 PVVKRKITLDVPVDKYPNQFNFVGRILGPRGNSLKRV*AMTECMVFIRGRGSITDSIXXXXXXXXPGYDHLNEPLHV*EEAEFPEDIKNPAWIMLQQ 857
            P+V+ +  L VPV +YP+ FNFVGRILGPRG + K++ A T C + +RG+GS+ D          P ++HLNE LHV       ED +N A I L++
Sbjct:   79 PIVQLQEKLYVPVKEYPD-FNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHV---LITVEDAQNRAEIKLKR 171          
BLAST of DY257801 vs. ExPASy Swiss-Prot
Match: QKIA_XENLA (Protein quaking-A OS=Xenopus laevis GN=qki-A PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 1.733e-12
Identity = 42/97 (43.30%), Postives = 60/97 (61.86%), Query Frame = 3
Query:  567 PVVKRKITLDVPVDKYPNQFNFVGRILGPRGNSLKRV*AMTECMVFIRGRGSITDSIXXXXXXXXPGYDHLNEPLHV*EEAEFPEDIKNPAWIMLQQ 857
            P+V+ +  L VPV +YP+ FNFVGRILGPRG + K++ A T C + +RG+GS+ D          P ++HLNE LHV       ED +N A + L++
Sbjct:   79 PIVQLQEKLYVPVKEYPD-FNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHV---LITVEDAQNRAELKLKR 171          
BLAST of DY257801 vs. ExPASy Swiss-Prot
Match: QKIB_DANRE (Protein quaking-B OS=Danio rerio GN=qkib PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.860e-12
Identity = 42/97 (43.30%), Postives = 59/97 (60.82%), Query Frame = 3
Query:  567 PVVKRKITLDVPVDKYPNQFNFVGRILGPRGNSLKRV*AMTECMVFIRGRGSITDSIXXXXXXXXPGYDHLNEPLHV*EEAEFPEDIKNPAWIMLQQ 857
            P+ + +  L VPV +YP+ FNFVGRILGPRG + K++ A T C + +RG+GS+ D          P ++HLNE LHV       ED +N A I L++
Sbjct:   78 PIAQLQEKLYVPVKEYPD-FNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHV---LITVEDSQNRAEIKLKR 170          
BLAST of DY257801 vs. ExPASy Swiss-Prot
Match: QKIA_DANRE (Protein quaking-A OS=Danio rerio GN=qkia PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 5.041e-12
Identity = 37/80 (46.25%), Postives = 50/80 (62.50%), Query Frame = 3
Query:  558 PTTPVVKRKITLDVPVDKYPNQFNFVGRILGPRGNSLKRV*AMTECMVFIRGRGSITDSIXXXXXXXXPGYDHLNEPLHV 797
            P  P+V  +  L VPV +YP+ +NFVGRILGPRG + K++ A T C + +RGR S+ D          P ++HLNE LHV
Sbjct:   75 PVGPIVHLQEKLFVPVKEYPD-YNFVGRILGPRGLTAKQLEAETGCKIMVRGRSSMRDKKKEEQNRGKPNWEHLNEDLHV 153          
The following BLAST results are available for this feature:
BLAST of DY257801 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
QKI_FELCA1.016e-1244.33Protein quaking OS=Felis catus GN=QKI PE=2 SV=1[more]
QKI_CHICK1.016e-1244.33Protein quaking OS=Gallus gallus GN=QKI PE=2 SV=2[more]
QKI_CANFA1.016e-1244.33Protein quaking OS=Canis familiaris GN=QKI PE=2 SV... [more]
QKI_BOVIN1.016e-1244.33Protein quaking OS=Bos taurus GN=QKI PE=2 SV=1[more]
QKIB_XENLA1.016e-1244.33Protein quaking-B OS=Xenopus laevis GN=qki-B PE=1 ... [more]
QKIA_XENLA1.733e-1243.30Protein quaking-A OS=Xenopus laevis GN=qki-A PE=1 ... [more]
QKIB_DANRE3.860e-1243.30Protein quaking-B OS=Danio rerio GN=qkib PE=2 SV=1[more]
QKIA_DANRE5.041e-1246.25Protein quaking-A OS=Danio rerio GN=qkia PE=2 SV=2[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAB1CB11ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257801 ID=DY257801; Name=DY257801; organism=Citrus clementina; type=EST; length=1294bp
GCACACAGGCTGACCTACGATTTTGCTCAGACTTAAGATAGTCCCAATGT
TTTGTTATTTCTTGTGCTTTCACCATCTTTTTATTTTAATGAACATGTTT
CCATGTACTCCCTTATCATTTTACCTTATAAAAATTTTTAATTGAACTTC
TAAAGTGATATATATTTGCCCCAGTAATATAGTGCCTTTATCATATGACG
AAATTATTGCCATCCCCCATTCCGACATCATAAATGAAAAAAAATAAAAA
AAAAGAATAAGGCAAAATTAATGAAAAAAAAAGCAAAAATAAAAACCATT
ATGATCCAAATTTTGCCACAAAGCAAACAAAGCTTCTCAATCAAAAAATC
AAACAAAAAACGGGTTACAATCCAAGTTTTGTTGATCATGAAAGGTTTGA
GCATGATAGCCCATTTAGGTCATTAGGTCAGCCAAATGGAACACCAATGG
ATTTGGAGGGTTTGTCTGCAATGCAAACTGAGGAAAATGGGCACCTTCAA
AGAATGGCCCCTTTTCAAACTCCTCCTTCAATGGGCTGGCAAGGTATTCC
TGCAATTCCAACCACACCTGTTGTAAAGAGAAAAATTACACTTGATGTTC
CTGTGGATAAATATCCAAATCAGTTTAATTTTGTCGGACGGATTTTGGGA
CCGCGTGGGAACTCGCTCAAAAGAGTCTAAGCCATGACAGAATGTATGGT
GTTCATTAGAGGCCGGGGTTCAATCACGGATTCAATAAAAAAAAAAAAAC
TTAAAGATAAACCTGGATATGACCATCTTAATGAGCCACTGCACGTGTAA
GAGGAGGCCGAATTTCCGGAGGATATAAAAAATCCCGCTTGGATCATGCT
GCAACAATACAAAAAACCTTTTAAAACCTGTTGATGAGCCCTTGGATCTT
TACAAAAAACAACACCAGCCGAAATTACTCCCCCAAATAAAAACTCCTAA
AAAAAAACACCCAAACATGAATCCAAAAAAAGAATCCAAAAAAGATAACC
CTTTACCAATGGTGGAATGAAACAGCGCCAAAACCCGAAAAAAAAAAATG
TAAAACAAAACCCTGGATAAAATTGGACCTTCCAAAGAAACCCCCGGGAT
TAACGGCATTTTAATGTTATTTCCTTTCCCTGAAAAATCTTTATTTTGGT
TTTTTTTTTTTTACAAAACCTTTTGGGGAGAAAAAAAATTTAAAATTAAA
AAAAAAAATTTATTTTGAATAAAAAAAATCTCCGGGAAAATTTTCTTTTT
TTTTGCCACCCCCCTCCCCCTCGGGGTTGAGGGGCGCCCCCCCC
back to top