DY257803

Overview
NameDY257803
Unique NameDY257803
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length416
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9984 contig Ccv1_Contig9984:4..419. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257803 vs. ExPASy Swiss-Prot
Match: MAN1_SOLLC (Mannan endo-1,4-beta-mannosidase 1 OS=Solanum lycopersicum GN=MAN1 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 3.581e-13
Identity = 37/80 (46.25%), Postives = 53/80 (66.25%), Query Frame = 2
Query:    5 LRMPVLFTEFGVSAKDTGYNTSFRDTLISSVYKTLLNSTKKGGSGAGSLLWQLFPDGTDYMNDGYAIVLSKSPSTSNIIS 244
            L+ P++  EFG S++  G     RD  +SSVY+ + N  K+GG+ AGSL+WQL   G +  +DGY IVL ++PST+ IIS
Sbjct:  308 LKKPLVLAEFGKSSRGQGS----RDIFMSSVYRNVYNLAKEGGTMAGSLVWQLMAHGMENYDDGYCIVLGQTPSTTQIIS 383          
BLAST of DY257803 vs. ExPASy Swiss-Prot
Match: MAN2_ORYSJ (Mannan endo-1,4-beta-mannosidase 2 OS=Oryza sativa subsp. japonica GN=MAN2 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 7.979e-13
Identity = 35/87 (40.23%), Postives = 54/87 (62.07%), Query Frame = 2
Query:    5 LRMPVLFTEFGVSAKDTGYNTSFRDTLISSVYKTLLNSTKKGGSGAGSLLWQLFPDGTDYMNDGYAIVLSKSPSTSNIISLHSTRIA 265
            L  PVL TEFG+S +  G+  + RD L  +VY  +  S ++GG+  G+L+WQL  +G +  +DG++IV S+ PS   +I   S R+A
Sbjct:  341 LEKPVLVTEFGLSHQVEGFEDAHRDVLYRAVYDIVHGSARRGGAAGGALVWQLAAEGMEEYHDGFSIVPSERPSMMRLIKEQSCRLA 427          
BLAST of DY257803 vs. ExPASy Swiss-Prot
Match: MAN3_SOLLC (Mannan endo-1,4-beta-mannosidase 3 OS=Solanum lycopersicum GN=MAN3 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.172e-12
Identity = 35/80 (43.75%), Postives = 51/80 (63.75%), Query Frame = 2
Query:    5 LRMPVLFTEFGVSAKDTGYNTSFRDTLISSVYKTLLNSTKKGGSGAGSLLWQLFPDGTDYMNDGYAIVLSKSPSTSNIIS 244
            L+ P++  EFG S++        RD  +SSVY+ + N  K+GG+  GSL+WQL   G +  +DGY+IVL  +PST+ IIS
Sbjct:  309 LKKPLVLAEFGKSSRS---GEGSRDIFMSSVYRNVYNLAKEGGTMGGSLVWQLMAHGMENYDDGYSIVLGLNPSTTQIIS 385          
BLAST of DY257803 vs. ExPASy Swiss-Prot
Match: MAN5_ARATH (Mannan endo-1,4-beta-mannosidase 5 OS=Arabidopsis thaliana GN=MAN5 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.718e-11
Identity = 33/86 (38.37%), Postives = 50/86 (58.14%), Query Frame = 2
Query:    5 LRMPVLFTEFGVSAKDTGYNTSFRDTLISSVYKTLLNSTKKGGSGAGSLLWQLFPDGTDYMNDGYAIVLSKSPSTSNIISLHSTRI 262
            L+ PVLFTEFG+S ++  Y  S RD     ++  +  S K+  SGAG+L+WQLF +G +  ND + IV  +  S   ++   S R+
Sbjct:  326 LKKPVLFTEFGLSNQNKDYEPSQRDKFYRIIFDVVYKSAKRKKSGAGTLVWQLFMEGMETFNDDFGIVPHEQDSIYKLMIEQSCRL 411          
BLAST of DY257803 vs. ExPASy Swiss-Prot
Match: MAN3_ARATH (Mannan endo-1,4-beta-mannosidase 3 OS=Arabidopsis thaliana GN=MAN3 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.753e-11
Identity = 30/86 (34.88%), Postives = 50/86 (58.14%), Query Frame = 2
Query:    5 LRMPVLFTEFGVSAKDTGYNTSFRDTLISSVYKTLLNSTKKGGSGAGSLLWQLFPDGTDYMNDGYAIVLSKSPSTSNIISLHSTRI 262
            L+ P++  EFG      GY  + RD + ++ + T+  S +KGG  AG+L W +  DG +   D  +IVLS++ +T NII+  S ++
Sbjct:  315 LKKPLILGEFGKPTNTPGYTQAQRDAVFNATFDTIYESAEKGGPAAGALFWHVISDGMNNFKDPLSIVLSENSTTVNIITEESRKL 400          
The following BLAST results are available for this feature:
BLAST of DY257803 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
MAN1_SOLLC3.581e-1346.25Mannan endo-1,4-beta-mannosidase 1 OS=Solanum lyco... [more]
MAN2_ORYSJ7.979e-1340.23Mannan endo-1,4-beta-mannosidase 2 OS=Oryza sativa... [more]
MAN3_SOLLC5.172e-1243.75Mannan endo-1,4-beta-mannosidase 3 OS=Solanum lyco... [more]
MAN5_ARATH5.718e-1138.37Mannan endo-1,4-beta-mannosidase 5 OS=Arabidopsis ... [more]
MAN3_ARATH9.753e-1134.88Mannan endo-1,4-beta-mannosidase 3 OS=Arabidopsis ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAB1CC03ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257803 ID=DY257803; Name=DY257803; organism=Citrus clementina; type=EST; length=416bp
ATATCTCAGAATGCCAGTTCTATTTACTGAGTTCGGCGTATCTGCAAAAG
ACACCGGTTATAACACATCATTCCGAGACACACTGATTAGCTCAGTATAC
AAAACTCTCTTGAACTCAACGAAGAAAGGAGGCAGCGGAGCCGGCAGCCT
CTTGTGGCAGCTCTTCCCTGATGGAACAGACTACATGAATGATGGGTATG
CAATTGTTCTTTCGAAATCTCCTTCAACTTCAAACATCATTTCCCTTCAT
TCCACAAGAATCGCAACCTTCAACTCCTTGTGTTCTACAAAATGTAAATG
GGGTTGCAAGAAGAAAACTCCTCTGGAGGAATTCCTTTACCACGATGATC
TGTAAATTTACACATGAATCTTATCATGGATGTTAAAACAATGCTATTGA
GAAATGAAGTATGTGC
back to top