DY257808

Overview
NameDY257808
Unique NameDY257808
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length559
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9860 contig Ccv1_Contig9860:10..568. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257808 vs. ExPASy Swiss-Prot
Match: EIF1B_MOUSE (Eukaryotic translation initiation factor 1b OS=Mus musculus GN=Eif1b PE=2 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 1.676e-28
Identity = 54/89 (60.67%), Postives = 74/89 (83.15%), Query Frame = 2
Query:  215 AGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKTLKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 481
            AG+++Y+HIR+QQRNGRK+LTTVQG+  ++   K +K  KK+F CNGTV++ PE G+VIQLQGDQRKN+  FL++ GIVK+E +K+HGF
Sbjct:   25 AGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLLEVGIVKEEQLKVHGF 113          
BLAST of DY257808 vs. ExPASy Swiss-Prot
Match: EIF1B_MACFA (Eukaryotic translation initiation factor 1b OS=Macaca fascicularis GN=EIF1B PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.676e-28
Identity = 54/89 (60.67%), Postives = 74/89 (83.15%), Query Frame = 2
Query:  215 AGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKTLKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 481
            AG+++Y+HIR+QQRNGRK+LTTVQG+  ++   K +K  KK+F CNGTV++ PE G+VIQLQGDQRKN+  FL++ GIVK+E +K+HGF
Sbjct:   25 AGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLLEVGIVKEEQLKVHGF 113          
BLAST of DY257808 vs. ExPASy Swiss-Prot
Match: EIF1B_HUMAN (Eukaryotic translation initiation factor 1b OS=Homo sapiens GN=EIF1B PE=1 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 1.676e-28
Identity = 54/89 (60.67%), Postives = 74/89 (83.15%), Query Frame = 2
Query:  215 AGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKTLKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 481
            AG+++Y+HIR+QQRNGRK+LTTVQG+  ++   K +K  KK+F CNGTV++ PE G+VIQLQGDQRKN+  FL++ GIVK+E +K+HGF
Sbjct:   25 AGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLLEVGIVKEEQLKVHGF 113          
BLAST of DY257808 vs. ExPASy Swiss-Prot
Match: EIF1_PONAB (Eukaryotic translation initiation factor 1 OS=Pongo abelii GN=EIF1 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.853e-27
Identity = 52/89 (58.43%), Postives = 72/89 (80.90%), Query Frame = 2
Query:  215 AGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKTLKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 481
            AG+++Y+HIR+QQRNGRK+LTTVQG+  ++   K +K  KK+F CNGTV++ PE G+VIQLQGDQRKN+  FLV+ G+ K + +K+HGF
Sbjct:   25 AGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 113          
BLAST of DY257808 vs. ExPASy Swiss-Prot
Match: EIF1_HUMAN (Eukaryotic translation initiation factor 1 OS=Homo sapiens GN=EIF1 PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.853e-27
Identity = 52/89 (58.43%), Postives = 72/89 (80.90%), Query Frame = 2
Query:  215 AGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKTLKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 481
            AG+++Y+HIR+QQRNGRK+LTTVQG+  ++   K +K  KK+F CNGTV++ PE G+VIQLQGDQRKN+  FLV+ G+ K + +K+HGF
Sbjct:   25 AGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 113          
BLAST of DY257808 vs. ExPASy Swiss-Prot
Match: EIF1_BOVIN (Eukaryotic translation initiation factor 1 OS=Bos taurus GN=EIF1 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.853e-27
Identity = 52/89 (58.43%), Postives = 72/89 (80.90%), Query Frame = 2
Query:  215 AGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKTLKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 481
            AG+++Y+HIR+QQRNGRK+LTTVQG+  ++   K +K  KK+F CNGTV++ PE G+VIQLQGDQRKN+  FLV+ G+ K + +K+HGF
Sbjct:   25 AGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 113          
BLAST of DY257808 vs. ExPASy Swiss-Prot
Match: EIF1_MOUSE (Eukaryotic translation initiation factor 1 OS=Mus musculus GN=Eif1 PE=2 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 2.420e-27
Identity = 51/89 (57.30%), Postives = 72/89 (80.90%), Query Frame = 2
Query:  215 AGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKTLKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 481
            AG+++Y+HIR+QQRNGRK+LTTVQG+  ++   K +K  KK+F CNGTV++ PE G+VIQLQGDQRKN+  FL++ G+ K + +K+HGF
Sbjct:   25 AGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLIEIGLAKDDQLKVHGF 113          
BLAST of DY257808 vs. ExPASy Swiss-Prot
Match: SUI1_YEAST (Eukaryotic translation initiation factor eIF-1 OS=Saccharomyces cerevisiae GN=SUI1 PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.124e-24
Identity = 49/92 (53.26%), Postives = 70/92 (76.09%), Query Frame = 2
Query:  206 DSGAGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKTLKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 481
            D    +  Y+HIR+QQRNGRK+LTTVQG+ +E+   + LK LKK+F CNG +V+DPE+G++IQLQGDQR  V  F++    ++K++IK+HGF
Sbjct:   17 DDETATSNYIHIRIQQRNGRKTLTTVQGVPEEYDLKRILKVLKKDFACNGNIVKDPEMGEIIQLQGDQRAKVCEFMISQLGLQKKNIKIHGF 108          
BLAST of DY257808 vs. ExPASy Swiss-Prot
Match: SUI1_ANOGA (Protein translation factor SUI1 homolog OS=Anopheles gambiae GN=AGAP006459 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.124e-24
Identity = 49/83 (59.04%), Postives = 66/83 (79.52%), Query Frame = 2
Query:  233 VHIRVQQRNGRKSLTTVQGLKKEFSYNKTLKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 481
            VHIR+QQRNGRK+LTTVQGL  E+   K ++  KKEF CNGTV++ PE G+V+QLQGDQR+N+  +L ++G+ K E +K+HGF
Sbjct:   28 VHIRIQQRNGRKTLTTVQGLSAEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKSGLAKPEQLKVHGF 110          
BLAST of DY257808 vs. ExPASy Swiss-Prot
Match: SUI1_DROME (Protein translation factor SUI1 homolog OS=Drosophila melanogaster GN=CG17737 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.918e-24
Identity = 48/83 (57.83%), Postives = 65/83 (78.31%), Query Frame = 2
Query:  233 VHIRVQQRNGRKSLTTVQGLKKEFSYNKTLKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 481
            VHIR+QQRNGRK+LTTVQGL  E+   K ++  KKEF CNGTV++ PE G+V+QLQGDQR+N+  +L + G+ K + +K+HGF
Sbjct:   28 VHIRIQQRNGRKTLTTVQGLSAEYDLKKIVRSCKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKVGLAKPDQLKVHGF 110          
The following BLAST results are available for this feature:
BLAST of DY257808 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
EIF1B_MOUSE1.676e-2860.67Eukaryotic translation initiation factor 1b OS=Mus... [more]
EIF1B_MACFA1.676e-2860.67Eukaryotic translation initiation factor 1b OS=Mac... [more]
EIF1B_HUMAN1.676e-2860.67Eukaryotic translation initiation factor 1b OS=Hom... [more]
EIF1_PONAB1.853e-2758.43Eukaryotic translation initiation factor 1 OS=Pong... [more]
EIF1_HUMAN1.853e-2758.43Eukaryotic translation initiation factor 1 OS=Homo... [more]
EIF1_BOVIN1.853e-2758.43Eukaryotic translation initiation factor 1 OS=Bos ... [more]
EIF1_MOUSE2.420e-2757.30Eukaryotic translation initiation factor 1 OS=Mus ... [more]
SUI1_YEAST1.124e-2453.26Eukaryotic translation initiation factor eIF-1 OS=... [more]
SUI1_ANOGA1.124e-2459.04Protein translation factor SUI1 homolog OS=Anophel... [more]
SUI1_DROME1.918e-2457.83Protein translation factor SUI1 homolog OS=Drosoph... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAB1CD07ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257808 ID=DY257808; Name=DY257808; organism=Citrus clementina; type=EST; length=559bp
GGGGGAGCTTCAGACTTATACGAATCCGATTTAGGGTTTCTTTTTGATCT
TATCAGATCGGACTATCTCGATTATTAAACCCTAATCTTCGGATCAGGTC
TGAGCATTCCGGTTGTTGGGCCCCTTGCATCAGCTGAGGTTCATGTCTGA
TTTTGATATCCAGGTTCCTGCTGCCTTTGACCCGTTTGCTGATGCAAAGG
CTGAGGACTCAGGTGCTGGTTCAAAAGAGTATGTGCATATCCGTGTTCAG
CAACGGAATGGTAGGAAAAGCCTGACAACTGTCCAGGGGTTGAAGAAAGA
ATTTAGTTACAACAAAACCCTCAAGGACCTCAAAAAGGAATTTTGCTGCA
ATGGAACAGTGGTCCAGGATCCTGAACTAGGACAGGTCATTCAACTCCAA
GGTGACCAGCGGAAGAATGTATCTACGTTCCTTGTTCAGGCTGGGATTGT
GAAGAAGGAACATATCAAAATGCATGGCTTTTAAGTAAACAGCAACTTCC
GTTTCTGCACATTTGGTGACCCGCGTTCGTCAGTGCAGTGCAGAACATGC
TATTGATAC
back to top