DY257811

Overview
NameDY257811
Unique NameDY257811
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length553
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9990 contig Ccv1_Contig9990:4..556. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257811 vs. ExPASy Swiss-Prot
Match: TIM9_SCHPO (Mitochondrial import inner membrane translocase subunit tim9 OS=Schizosaccharomyces pombe GN=tim9 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.069e-15
Identity = 34/80 (42.50%), Postives = 55/80 (68.75%), Query Frame = 1
Query:   61 LDGLPEQDKARMAAMIDHLQLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMRCAEKFLKHSMRVGMRFAELNSQ 300
            +D L  +++  +  +++  QL++ L MY++L + CF+DCV +FT   L  +E  C+ +CA+KFLKHS RVG RFAE N++
Sbjct:    1 MDRLNVKEQEHLTQVLEAKQLKEYLNMYSTLTQNCFSDCVQDFTSSKLSNKESECIAKCADKFLKHSERVGQRFAEFNAK 80          
BLAST of DY257811 vs. ExPASy Swiss-Prot
Match: TIM9_DEBHA (Mitochondrial import inner membrane translocase subunit TIM9 OS=Debaryomyces hansenii GN=TIM9 PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.027e-14
Identity = 33/79 (41.77%), Postives = 55/79 (69.62%), Query Frame = 1
Query:   61 LDGLPEQDKARMAAMIDHLQLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMRCAEKFLKHSMRVGMRFAELNS 297
            +D L  +++     +++  Q++D +R+Y++LV +CF+DCV++FT   L  +E  C+ +C+EKFLKHS RVG RF E N+
Sbjct:    1 MDQLNVKEQQDFQQIVEQKQMKDFMRLYSNLVSKCFDDCVNDFTSNNLTTKETGCITKCSEKFLKHSERVGQRFQEQNA 79          
BLAST of DY257811 vs. ExPASy Swiss-Prot
Match: TIM9_CANAL (Mitochondrial import inner membrane translocase subunit TIM9 OS=Candida albicans GN=TIM9 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.027e-14
Identity = 32/76 (42.11%), Postives = 54/76 (71.05%), Query Frame = 1
Query:   61 LDGLPEQDKARMAAMIDHLQLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMRCAEKFLKHSMRVGMRFAE 288
            +D L  +++     +++  Q++D + +Y++LV RCF+DCV++FT  +L  +E +C+ +C+EKFLKHS RVG RF E
Sbjct:    1 MDQLNVKEQQEFQQIVEQKQMKDFMNLYSNLVSRCFDDCVNDFTSNSLTSKETSCIAKCSEKFLKHSERVGQRFQE 76          
BLAST of DY257811 vs. ExPASy Swiss-Prot
Match: TIM9_ASPFU (Mitochondrial import inner membrane translocase subunit tim9 OS=Aspergillus fumigatus GN=tim9 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.027e-14
Identity = 33/79 (41.77%), Postives = 57/79 (72.15%), Query Frame = 1
Query:   61 LDGLPEQDKARMAAMIDHLQLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMRCAEKFLKHSMRVGMRFAELNS 297
            +DGL   ++  +A+ ++  QL++ + MY+ LV+RCF++CV++FT K+L  +EE C+MRC +K++K S R+  RF E N+
Sbjct:    1 MDGLTAAEQRELASRMERKQLKEFMTMYSKLVQRCFDNCVNDFTTKSLISREEGCIMRCVDKYMKASSRLNERFQEQNA 79          
BLAST of DY257811 vs. ExPASy Swiss-Prot
Match: TIM9_EMENI (Mitochondrial import inner membrane translocase subunit tim9 OS=Emericella nidulans GN=tim9 PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 1.483e-13
Identity = 32/72 (44.44%), Postives = 52/72 (72.22%), Query Frame = 1
Query:   82 DKARMAAMIDHLQLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMRCAEKFLKHSMRVGMRFAELNS 297
            ++  +A  ++  Q+++ + MY+ LV+RCF+DCV++FT K+L  +EE CVMRC +KF+K S R+  RF E N+
Sbjct:    8 EQRELANRMERKQMKEFMTMYSKLVQRCFDDCVNDFTTKSLISREEGCVMRCVDKFMKGSQRLNERFQEQNA 79          
The following BLAST results are available for this feature:
BLAST of DY257811 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
TIM9_SCHPO2.069e-1542.50Mitochondrial import inner membrane translocase su... [more]
TIM9_DEBHA1.027e-1441.77Mitochondrial import inner membrane translocase su... [more]
TIM9_CANAL1.027e-1442.11Mitochondrial import inner membrane translocase su... [more]
TIM9_ASPFU1.027e-1441.77Mitochondrial import inner membrane translocase su... [more]
TIM9_EMENI1.483e-1344.44Mitochondrial import inner membrane translocase su... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAB1CD10ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257811 ID=DY257811; Name=DY257811; organism=Citrus clementina; type=EST; length=553bp
GAGTTCAACAACATTCAACACAGAAAAGGAGCCGGAATGGACAAGAACAT
GTTGGCTGGACTTGACGGTCTTCCCGAACAGGACAAGGCCAGAATGGCTG
CCATGATCGACCATCTTCAATTACGGGACAGTTTGAGGATGTACAACTCC
CTTGTGGAGAGATGTTTCAACGATTGTGTGGACAACTTTACACGCAAGAC
CCTACAGAAGCAAGAGGAGACCTGCGTCATGCGTTGTGCTGAGAAATTTC
TGAAGCACTCAATGCGCGTTGGTATGAGGTTTGCAGAACTCAATTCACAA
GCAGCTACACAAGAATAGTATCCCCAGACGACCATTAACGGCGCCAAGAA
ACCATTTGGTTTATTCCTGTAGAATTTCTTTTGGATCAAATTAGTGGCTA
TTAATTTTCTGCTTTTGCCATCAGTGGAAGCCCAAGTTTGCGGTAGGATT
CATAATCATCGTCTGAAAAATCATTTTTACACATTTTATCATGGCTTCAC
ATATTGAATAATTGAATCAAATATAACGGAAAAAAAAAAAAAAAAAAAAA
AAA
back to top