DY257813

Overview
NameDY257813
Unique NameDY257813
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1005
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6379 contig Ccv1_Contig6379:416..1420. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY257813 vs. ExPASy Swiss-Prot
Match: STSY_RAUMA (Strictosidine synthase (Fragment) OS=Rauvolfia mannii GN=STR1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.772e-11
Identity = 48/161 (29.81%), Postives = 84/161 (52.17%), Query Frame = 1 
Query:   61 MIVADAYKGLLKIS---GNSTVLLTDEAEGQKFKLTDGVDVAD-DGMIYFTDASNKYYLR--EYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATE 525
            + + D Y  L  +    G++T L T   +G  FK    V V    G++YFTD S  Y  R  + I+D  +    GRL+ +DP TKET +L+ +L+   G  +S D + ++  E    +  K++++G   G  E  ++ +P  P NI+ + +GH+ ++ + E
Sbjct:  114 LYIVDCYYHLSVVGSEGGHATQLATS-VDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSD--KTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IPN-PGNIKRNADGHFWVSSSEE 269
[Close]
BLAST of DY257813 vs. ExPASy Swiss-Prot
Match: STSY_CATRO (Strictosidine synthase OS=Catharanthus roseus GN=STR1 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 8.845e-11
Identity = 48/160 (30.00%), Postives = 80/160 (50.00%), Query Frame = 1 
Query:   61 MIVADAYKGLLKIS--GNSTVLLTDEAEGQKFKLTDGVDVAD-DGMIYFTDASNKYY-LREYILDIFEGKPN-GRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATE 525
            M + D +  L  +   G     L    +G  FK    V V    G++YFTD S+ +    E + +I       GRL+ +DP TKET +L+ +L+   G  +S D + +V  E    R  K++++G   G  E F+ T+P  P NI+ + +GH+ ++ + E
Sbjct:  120 MYIVDGHYHLCVVGKEGGYATQLATSVQGVPFKWLYAVTVDQRTGIVYFTDVSSIHDDSPEGVEEIMNTSDRTGRLMKYDPSTKETTLLLKELHVPGGAEISADGSFVVVAEFLSNRIVKYWLEGPKKGSAE-FLVTIPN-PGNIKRNSDGHFWVSSSEE 277
The following BLAST results are available for this feature:
BLAST of DY257813 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
STSY_RAUMA6.772e-1129.81Strictosidine synthase (Fragment) OS=Rauvolfia man... [more]
STSY_CATRO8.845e-1130.00Strictosidine synthase OS=Catharanthus roseus GN=S... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1CE02ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257813 ID=DY257813; Name=DY257813; organism=Citrus clementina; type=EST; length=1005bp
GGCGGCCGACCACTGGGAATCGCTTTTGCAAACAGCGATCCCGATGCCGA
TCGTATCACTATGATCGTTGCGGACGCTTACAAGGGGCTACTGAAAATAA
GCGGAAATTCAACAGTGTTGCTAACAGATGAGGCCGAGGGTCAAAAATTC
AAGCTGACGGATGGGGTAGATGTTGCTGATGATGGCATGATTTATTTTAC
AGATGCTTCGAATAAATACTACTTAAGGGAATACATCCTTGATATTTTTG
AGGGAAAGCCTAATGGCAGATTACTAAGCTTTGATCCAGTTACCAAGGAA
ACCAAAGTTCTCGTTTCTGACCTCTACTTTGCTAACGGAGTTGTGCTTTC
ACCAGACCAAACTCATCTCGTTTATTGTGAGACCTCAATGAGAAGGTGCA
GAAAATTTTACATCAAAGGCAAGAACGCTGGACGTGTGGAGAAGTTCATT
GAGACTTTGCCAGGCTTGCCTGATAACATACGTTATGATGGAGAAGGCCA
TTACTTGATTGCATTAGCAACGGAATTTTCGACTTACTGGGATCTAGCAT
ACAGATATCCCTTTATCCGAAAGGTTTCAGGAATGGTGGTGAGATACCTA
GGGATGCCACCCATGGGCAAAAGCAGCAGCGGGGTTTTTATCGTTGACTT
GGATGGAAAACCAATTGCTCACTATTATGATCCTGAAATGTCACTCATTT
CCAGTGCAATCAAGATTGGAGATCATCTATACTGTGGTTCCGTACATCAC
CGTGGCATTCTTCACCTTGATGTTAATCAACATCCTGCACGGGCCATTAT
ATGAGCAACTTAGTCTGCAAATATACATGATCATAAAAGTGCTGGATTCT
GCTATACAATGATGACAATTTTGACATTAAAGCAAATGCCATGTACAACT
GACATTTATTATGGCTTCTCAGCTTGTGAAGATTGTAATAATCAATGACC
ATGTGATGAAAGTGACTTTTTATTTGGGAACTTGACTTTACTTTTGTTTA
AGGAA
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