DY257816

Overview
NameDY257816
Unique NameDY257816
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length897
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14757 contig Ccv1_Contig14757:204..1100. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257816 vs. ExPASy Swiss-Prot
Match: CHIT_DIOJA (Acidic endochitinase OS=Dioscorea japonica PE=1 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 2.619e-32
Identity = 79/221 (35.75%), Postives = 117/221 (52.94%), Query Frame = 3
Query:   45 CPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPC--RGKYYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 695
            CP + FYT   F+EA  A+P FG    +  RKREIAA+FA   HET                C+  E    +++YC  +  YPC    +Y+GRGP+QL+WNYNY+  G+ L    D LN+PD++  +     ++SFK+++WFW+     +     VI+D   P+          G+G T  IINGG EC       +  R+G++  +C + G+ PG+NL C
Sbjct:   66 CPGKSFYTRSNFLEAVSAYPGFGTKCTDEDRKREIAAYFAHVTHET-------------GHLCYIEERDGHANNYCQESQQYPCNPNKEYFGRGPMQLSWNYNYIDAGKEL--HFDGLNDPDIVGRDP----IISFKTSLWFWI-----RKGVQYVILD---PN---------QGFGATIRIINGGQECDGHNTAQMMARVGYYQEYCAQLGVSPGNNLPC 250          
BLAST of DY257816 vs. ExPASy Swiss-Prot
Match: CHI4_ORYSJ (Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 2.619e-32
Identity = 80/236 (33.90%), Postives = 118/236 (50.00%), Query Frame = 3
Query:    3 EMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN---YPCRG--KYYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 695
            E F + ++ +    C  + FYT  +F+ AA+++  F N       KREIAAFFA   HET                C+  E+  A+ DYCD +   +PC+   KYYGRGP+Q++WN+NY   G+ +G   D L +PD +A +      +SFK+A+WFWM                     N+V+     G+G T   ING +EC      AV  R+ ++  +C +FG+ PG NL C
Sbjct:   90 EAFFNGIKNQAPNGCAGKSFYTRQSFLNAARSYSGFANDRTNDDSKREIAAFFAHVTHETGH-------------MCYINEINGANMDYCDKSNKQWPCQPGKKYYGRGPLQISWNFNYGPAGKNIGF--DGLRDPDKVAQDP----TISFKTALWFWM---------------------NNVHQVMSQGFGATIRAINGALECNGKNPGAVNARVNYYKDYCRQFGVSPGGNLYC 285          
BLAST of DY257816 vs. ExPASy Swiss-Prot
Match: CHIB_MAIZE (Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.217e-31
Identity = 82/223 (36.77%), Postives = 114/223 (51.12%), Query Frame = 3
Query:   45 CPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDP---NYPCRG--KYYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRN-RIGFFTTFCGKFGIQPGDNLDC 695
            C  + FYT  AF+ A K +P F + G++   KREIAAFFA   HET               +C+  E+   S+ YCDP    +PC    KYYGRGP+Q++WNYNY   G  +  G D L +P  +A +     V++FK+A+WFWM       S H V+                 G+G TT  +   +ECG G N A  N R+G++  +C + G+ PG NL C
Sbjct:   89 CEGKNFYTRSAFLSAVKGYPGFAHGGSQVQGKREIAAFFAHATHET-------------GHFCYISEIN-KSNAYCDPTKRQWPCAAGQKYYGRGPLQISWNYNYGPAGRAI--GFDGLGDPGRVARD----AVVAFKAALWFWMN------SVHGVVPQ---------------GFGATTRAMQRALECG-GNNPAQMNARVGYYRQYCRQLGVDPGPNLTC 269          
BLAST of DY257816 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.437e-30
Identity = 81/231 (35.06%), Postives = 111/231 (48.05%), Query Frame = 3
Query:   36 DKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCD----PNYPCRGK--YYGRGPIQLTWNYNYLRCG-----EGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 695
            D  C  + FYT DAF+ A  ++  FG  G+E   KREIAA FA   HET               +C+  E+  AS DYCD      YPC     Y+GRGPIQL+WN+NY   G     +GLG  E + N+            V+SFK+A+W+WM  Q  +P  ++                   G+G T   ING +EC       V+ R+ ++T +C + G+  GDNL C
Sbjct:   85 DSGCAGKNFYTRDAFLSALNSYTDFGRVGSEDDSKREIAAAFAHFTHET-------------GHFCYIEEIDGASKDYCDEESIAQYPCSSSKGYHGRGPIQLSWNFNYGPAGSANNFDGLGAPETVSNDV-----------VVSFKTALWYWM--QHVRPVINQ-------------------GFGATIRAINGALECDGANPTTVQARVNYYTEYCRQLGVATGDNLTC 270          
BLAST of DY257816 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 9.316e-30
Identity = 80/223 (35.87%), Postives = 112/223 (50.22%), Query Frame = 3
Query:   45 CPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN---YPCRG--KYYGRGPIQLTWNYNYLRCGEGLGRGEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRN-RIGFFTTFCGKFGIQPGDNLDC 695
            C  + FYT  AF+ A  A+P F + G E   KREIAAFFA   HET               +C+  E+   S+ YCD +   +PC    KYYGRGP+Q++WNYNY   G  +G     L +P+ +A    +  V++FK+A+WFWM                     N+V+     G+G T   ING +EC  G N A  N R+G++  +C +  + PG NL C
Sbjct:  100 CEGKNFYTRSAFLSAVNAYPGFAHGGTEVEGKREIAAFFAHVTHET-------------GHFCYISEIN-KSNAYCDASNRQWPCAAGQKYYGRGPLQISWNYNYGPAGRDIGFNG--LADPNRVA----QDAVIAFKTALWFWM---------------------NNVHGVMPQGFGATIRAINGALECN-GNNPAQMNARVGYYKQYCQQLRVDPGPNLIC 280          
BLAST of DY257816 vs. ExPASy Swiss-Prot
Match: CHI4_ARAHY (Endochitinase 4 (Fragment) OS=Arachis hypogaea PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.549e-11
Identity = 29/46 (63.04%), Postives = 36/46 (78.26%), Query Frame = 3
Query:  462 MTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIEC 599
            MT Q  KPSCH+VI + W+P+A D  AGR PGYG+ TNIINGG++C
Sbjct:    1 MTPQGNKPSCHDVITNAWRPTATDSAAGRAPGYGVITNIINGGLDC 46          
The following BLAST results are available for this feature:
BLAST of DY257816 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHIT_DIOJA2.619e-3235.75Acidic endochitinase OS=Dioscorea japonica PE=1 SV... [more]
CHI4_ORYSJ2.619e-3233.90Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIB_MAIZE2.217e-3136.77Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1[more]
CHI4_PHAVU1.437e-3035.06Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE... [more]
CHIA_MAIZE9.316e-3035.87Endochitinase A OS=Zea mays PE=1 SV=1[more]
CHI4_ARAHY2.549e-1163.04Endochitinase 4 (Fragment) OS=Arachis hypogaea PE=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1CE08ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257816 ID=DY257816; Name=DY257816; organism=Citrus clementina; type=EST; length=897bp
GGGAGATGTTTGAAGACTTGCTTGAGTATAGAAATGATAAACGATGCCCT
GCCAGATGCTTCTACACTTATGATGCTTTTATAGAGGCAGCCAAAGCTTT
TCCAGCCTTTGGTAACTCTGGAAATGAAACCATGCGTAAAAGAGAAATTG
CTGCCTTTTTTGCCCAAACTGGCCATGAAACTACTGGGGGATGGCCCGAT
GCACCTGGTGGCGAATATGCTTGGGGATATTGCTTTAATAGGGAAGTTGG
CGCTGCGTCGTCCGACTACTGTGATCCTAACTATCCATGTCGAGGGAAGT
ACTATGGCCGAGGTCCAATTCAACTCACTTGGAATTACAATTACTTACGG
TGCGGAGAAGGCCTAGGGCGAGGAGAGGACTTGTTGAACAATCCAGACCT
TCTTGCTACTAATGATAAAGAAGGACGAGTACTATCATTCAAGTCAGCAA
TCTGGTTCTGGATGACTGCACAGCCACCAAAGCCATCGTGCCACGAAGTC
ATTATCGACGAATGGAAACCATCAGCAAATGACGTAAACGCCGGCCGGCT
TCCGGGATACGGTCTAACCACAAATATAATCAACGGTGGAATTGAATGTG
GCTACGGTGGGAATGACGCTGTACGTAACCGTATTGGGTTCTTTACCACT
TTCTGTGGCAAGTTTGGGATTCAGCCTGGTGACAATCTTGATTGCTCCAA
CCAACGGCCTTATGGCCTTAATCTGATGGCACAATCTATGTGATCATCAT
GATCAACGTTTTAGTAAAATAAGCTTAATAAAAGCTACTTAATAAAAACT
TTAGATGTCACACTTGTANGTGGACAACTAAACTGTTACGCTCTTATTGT
AAGTAAATTAAATAAGACTGATCCAACATGGATCAATGAGTCTTCTG
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