DY257821

Overview
NameDY257821
Unique NameDY257821
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length799
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY257821_ssr445 microsatellite DY257821_ssr445:445..456. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10005 contig Ccv1_Contig10005:4..802. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257821 vs. ExPASy Swiss-Prot
Match: RS24_MACFA (40S ribosomal protein S24 OS=Macaca fascicularis GN=RPS24 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.321e-37
Identity = 78/115 (67.83%), Postives = 93/115 (80.87%), Query Frame = 1
Query:   70 ITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKRMKERKNRQKKIR 414
            +TIRTRKFMTNRLL RKQ VI VLHPG+A V K E++EKLA+MY     + IFVF FRTHFGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + SRK+ KERKNR KK+R
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIGVLHPGKATVPKTEIREKLAKMYKTTP-DVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVR 118          
BLAST of DY257821 vs. ExPASy Swiss-Prot
Match: RS24_SPOFR (40S ribosomal protein S24 OS=Spodoptera frugiperda GN=RpS24 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.253e-37
Identity = 77/120 (64.17%), Postives = 95/120 (79.17%), Query Frame = 1
Query:   55 MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKRMKERKNRQKKIR 414
            M +   TIRTRKFMTNRLL+RKQ V DVLHPG+  VSK E++EKLA+MY V   + +FVF F+T+FGGGKSTGF LIYD+++ AKKFEPK+RL R+GL  K   +RK+ KERKNR KK+R
Sbjct:    1 MTEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTP-DVVFVFGFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVR 119          
BLAST of DY257821 vs. ExPASy Swiss-Prot
Match: RS24_RHIRA (40S ribosomal protein S24 OS=Rhizomucor racemosus GN=RPS24 PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.943e-37
Identity = 76/124 (61.29%), Postives = 95/124 (76.61%), Query Frame = 1
Query:   43 IET*MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKRMKERKNRQKKIR 414
            + T  AD A+TIRTRKF+TNRLL RKQ V+DV+HPG ANVSK EL+ K+ +MY   D   + VF F+THFGGGK+TGF LIYD+VE+ K FEPK+RL+R GLA   +  RK+ KE+KNR+KK R
Sbjct:   15 MRTKRADAAVTIRTRKFLTNRLLQRKQMVVDVIHPGLANVSKDELRSKIGKMYKA-DKEVVSVFGFKTHFGGGKTTGFALIYDNVEALKNFEPKHRLVRIGLAEAPKGGRKQRKEKKNREKKFR 137          
BLAST of DY257821 vs. ExPASy Swiss-Prot
Match: RS24_ICTPU (40S ribosomal protein S24 OS=Ictalurus punctatus GN=rps24 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.907e-36
Identity = 73/116 (62.93%), Postives = 93/116 (80.17%), Query Frame = 1
Query:   67 AITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKRMKERKNRQKKIR 414
            ++T+RTRKFMTNRLL RKQ V+DVLHPG+A V K E++EKLA+MY     + +FVF F+T FGGGK+TGF ++YDS++ AKK EPKYRL R+GL  K + SRK+ KERKNR KK+R
Sbjct:    4 SVTLRTRKFMTNRLLQRKQMVLDVLHPGKATVPKTEIREKLAKMYKTTP-DVVFVFGFKTQFGGGKTTGFAMVYDSLDYAKKNEPKYRLARHGLYEKKKTSRKQRKERKNRMKKVR 118          
BLAST of DY257821 vs. ExPASy Swiss-Prot
Match: RS24_TAKRU (40S ribosomal protein S24 OS=Takifugu rubripes GN=rps24 PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.491e-36
Identity = 73/115 (63.48%), Postives = 92/115 (80.00%), Query Frame = 1
Query:   70 ITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKRMKERKNRQKKIR 414
            +T+RTRKFMTNRLL RKQ V+DVLHPG+A V K E++EKLA+MY     + +FVF FRT FGGGK+TGF ++YDS++ AKK EPK+RL R+GL  K + SRK+ KERKNR KK+R
Sbjct:    5 VTVRTRKFMTNRLLQRKQMVVDVLHPGKATVPKTEIREKLAKMYKTTP-DVVFVFGFRTQFGGGKTTGFAMVYDSLDYAKKNEPKHRLARHGLFEKKKTSRKQRKERKNRMKKVR 118          
BLAST of DY257821 vs. ExPASy Swiss-Prot
Match: RS24_YEAST (40S ribosomal protein S24 OS=Saccharomyces cerevisiae GN=RPS24A PE=1 SV=3)

HSP 1 Score: 152.14 bits (383), Expect = 3.254e-36
Identity = 78/116 (67.24%), Postives = 95/116 (81.90%), Query Frame = 1
Query:   67 AITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEK-SRKRMKERKNRQKKI 411
            A+TIRTRK ++N LL+RKQFV+DVLHP RANVSK EL+EKLA +Y   + +A+ VF FRT FGGGKS GFGL+Y+SV  AKKFEP YRL+R GLA KVEK SR++ K++KNR KKI
Sbjct:    4 AVTIRTRKVISNPLLARKQFVVDVLHPNRANVSKDELREKLAEVYKA-EKDAVSVFGFRTQFGGGKSVGFGLVYNSVAEAKKFEPTYRLVRYGLAEKVEKASRQQRKQKKNRDKKI 118          
BLAST of DY257821 vs. ExPASy Swiss-Prot
Match: RS24B_SCHPO (40S ribosomal protein S24-B OS=Schizosaccharomyces pombe GN=rps24b PE=2 SV=3)

HSP 1 Score: 151.754 bits (382), Expect = 4.249e-36
Identity = 74/117 (63.25%), Postives = 94/117 (80.34%), Query Frame = 1
Query:   64 KAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEK-SRKRMKERKNRQKKI 411
            +A+TIRTRKFMTNRLL RKQ V+D+LHPG+AN+SK E++EKLA+MY   D+  +  F  RTHFGGG+STGF LIYDS ES KKFEP YRL+R G A  ++K +R++ K+RKNR KK+
Sbjct:    3 EAVTIRTRKFMTNRLLQRKQMVVDILHPGKANLSKNEIREKLAQMYKT-DSECVQAFGLRTHFGGGRSTGFALIYDSTESMKKFEPHYRLVRVGQAEPIQKVARQQRKQRKNRGKKV 118          
BLAST of DY257821 vs. ExPASy Swiss-Prot
Match: RS24A_SCHPO (40S ribosomal protein S24-A OS=Schizosaccharomyces pombe GN=rps24a PE=2 SV=3)

HSP 1 Score: 149.828 bits (377), Expect = 1.615e-35
Identity = 72/117 (61.54%), Postives = 95/117 (81.20%), Query Frame = 1
Query:   64 KAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEK-SRKRMKERKNRQKKI 411
            +A+TIRTRKFMTNRLL RKQ V+D+LHPG+AN+SK +L+EKL +MY   DA+A+  F  RTH+GGG++TGF LIYD VE+ KKFEP YRL+R G A  ++K +R++ K+RKNR KK+
Sbjct:    3 EAVTIRTRKFMTNRLLQRKQMVVDILHPGKANISKNDLREKLGQMYKT-DASAVQAFGLRTHYGGGRTTGFALIYDDVEAMKKFEPHYRLVRVGHAEPIQKVARQQRKQRKNRGKKV 118          
BLAST of DY257821 vs. ExPASy Swiss-Prot
Match: RS24_ORYLA (40S ribosomal protein S24 OS=Oryzias latipes GN=rps24 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.367e-34
Identity = 71/115 (61.74%), Postives = 90/115 (78.26%), Query Frame = 1
Query:   70 ITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKRMKERKNRQKKIR 414
            +TIRTRKFMTNRLL RKQ V+DVLHPG+A V K E++EKLA+MY     + +FVF FRT FGGGK+TGF ++YDS++ AKK EPK+RL  +GL  K + SRK+  ER+NR KK+R
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVVDVLHPGKATVPKTEIREKLAKMYKTTP-DVVFVFGFRTQFGGGKTTGFAMVYDSLDYAKKNEPKHRLATHGLYEKKKTSRKQRTERQNRMKKVR 118          
The following BLAST results are available for this feature:
BLAST of DY257821 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
RS24_MACFA1.321e-3767.8340S ribosomal protein S24 OS=Macaca fascicularis G... [more]
RS24_SPOFR2.253e-3764.1740S ribosomal protein S24 OS=Spodoptera frugiperda... [more]
RS24_RHIRA2.943e-3761.2940S ribosomal protein S24 OS=Rhizomucor racemosus ... [more]
RS24_ICTPU1.907e-3662.9340S ribosomal protein S24 OS=Ictalurus punctatus G... [more]
RS24_TAKRU2.491e-3663.4840S ribosomal protein S24 OS=Takifugu rubripes GN=... [more]
RS24_YEAST3.254e-3667.2440S ribosomal protein S24 OS=Saccharomyces cerevis... [more]
RS24B_SCHPO4.249e-3663.2540S ribosomal protein S24-B OS=Schizosaccharomyces... [more]
RS24A_SCHPO1.615e-3561.5440S ribosomal protein S24-A OS=Schizosaccharomyces... [more]
RS24_ORYLA1.367e-3461.7440S ribosomal protein S24 OS=Oryzias latipes GN=rp... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1CF10ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257821 ID=DY257821; Name=DY257821; organism=Citrus clementina; type=EST; length=799bp
GGGACACTTGAGACTTGCTTTGCATTGCAGTGCAATTGATTCATTGAGAC
ATAAATGGCTGACAAGGCGATCACCATCCGAACCAGAAAGTTCATGACCA
ACAGGCTTCTGTCGAGGAAACAATTTGTTATCGATGTTCTGCATCCAGGT
CGAGCCAATGTTTCAAAGGCCGAGTTGAAGGAGAAATTGGCGAGGATGTA
TGATGTGAGGGATGCGAATGCTATATTTGTGTTCAAATTTCGTACACATT
TTGGAGGTGGGAAATCAACTGGGTTTGGCCTCATCTATGACTCTGTTGAG
AGTGCAAAGAAGTTTGAGCCCAAGTACAGGCTAATCAGGAATGGACTGGC
TACCAAGGTTGAGAAGTCAAGGAAGCGGATGAAAGAGAGGAAAAACAGGC
AAAAGAAGATCAGAGGTGTCAAGAAGGCCAAGGCTGAAGCTGGCAAGAAG
AAGAAGTGAGGCCTTGGGGCGTTTAACCTGGCTTCTTCCAACAGCACGAA
TAGTTCCTTCGCTCTTTCTTTTAGTTATTAAATAACTAGCGAGTGGCTTA
GCTCTTTTGTATTTCTATGAGACATTATTATATTTGATGTTTGCTATAAT
ATTAGTACCTGGAGGGAAAATGTTTCTTAGTGAAATAAAGAGGTACTTTC
TCTGAGTCTATTGGTGCTTTTGGAATAAAATTGTCAAAGCGGTTGATAAC
TAGTAGTTTCATTTCACATCAACCACGTAACAATACAAATCCTCAAAATA
GAGCCTTGAGATTGCCTTCCCATCACTTAAAAATAATATTTTTATTTTA
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