DY257827
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY257827 vs. ExPASy Swiss-Prot
Match: MTU1_HUMAN (Mitochondrial tRNA-specific 2-thiouridylase 1 OS=Homo sapiens GN=TRMU PE=1 SV=2) HSP 1 Score: 72.4034 bits (176), Expect = 2.702e-12 Identity = 48/132 (36.36%), Postives = 66/132 (50.00%), Query Frame = 1 Query: 1 GFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISR---LQC--KVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVIL 381 G++ YT+GQR + PWYVVEKD VFV+ R L R + W++ PP + R ++C + RH C L + +DG + VQ + LA GQFA FY+G C+GSG IL Sbjct: 258 GWFLYTLGQRANIGGLREPWYVVEKDSVKGDVFVAPRTDHPALYRDLLRTSRVHWIAEEPPAALVRDKMMECHFRFRHQMALVPCVLTLN--QDGTVWVTAVQAV---RALATGQFAVFYKGDECLGSGKIL 384
BLAST of DY257827 vs. ExPASy Swiss-Prot
Match: MTU1_PONAB (Mitochondrial tRNA-specific 2-thiouridylase 1 OS=Pongo abelii GN=TRMU PE=2 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 3.529e-12 Identity = 48/132 (36.36%), Postives = 66/132 (50.00%), Query Frame = 1 Query: 1 GFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISR---LQC--KVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVIL 381 G++ YT+GQR + PWYVVEKD VFV+ R L R + W++ PP + R ++C + RH C L + +DG + VQ + LA GQFA FY+G C+GSG IL Sbjct: 259 GWFLYTLGQRANIGGLREPWYVVEKDSVKGDVFVAPRTDHPALYRDLLRTSRVHWIAEEPPAVLVRDKMMECHFRFRHQMALVPCVLTLN--QDGTVWVTAVQAV---RALATGQFAVFYKGDECLGSGKIL 385
BLAST of DY257827 vs. ExPASy Swiss-Prot
Match: MNMA_PSEA7 (tRNA-specific 2-thiouridylase mnmA OS=Pseudomonas aeruginosa (strain PA7) GN=mnmA PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.609e-12 Identity = 47/144 (32.64%), Postives = 69/144 (47.92%), Query Frame = 1 Query: 1 GFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVI--LESWDDQGFP 408 G ++TIGQRQGL + G PWYV+ KD++ NV+ V + R + W++ + E RL+ KVR+ +C ++E DG + E + + GQ FY G C+G GVI E+WD G P Sbjct: 238 GLMYHTIGQRQGLGIGGLKEAGDDPWYVLGKDLQRNVLLVGQGNDHPLLFSRALLASRIYWVNPVELERPRRLRAKVRYRQSDQDC--VLEKTADGYRAV----FDEPQRAVTPGQSVVFYDGEVCLGGGVIETAEAWDFGGRP 375
BLAST of DY257827 vs. ExPASy Swiss-Prot
Match: MTU1_RAT (Mitochondrial tRNA-specific 2-thiouridylase 1 OS=Rattus norvegicus GN=Trmu PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 6.019e-12 Identity = 47/132 (35.61%), Postives = 66/132 (50.00%), Query Frame = 1 Query: 1 GFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISR---LQC--KVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVIL 381 G++ YT+GQR + PWYVVEKD V V+ R L R + W++ PP + R ++C + RH C L + +DG + V+ +GLA GQFA FY+G C+GSG IL Sbjct: 282 GWFLYTLGQRAKISGLSEPWYVVEKDGTKGDVLVAPRVDHPALYRDLLRTNRVHWIAEEPPAALVRDKMMECHFRFRHQMALVPCVLTLN--QDGTVWVTAVKAV---RGLALGQFAVFYKGEECLGSGKIL 408
BLAST of DY257827 vs. ExPASy Swiss-Prot
Match: MTU1_MOUSE (Mitochondrial tRNA-specific 2-thiouridylase 1 OS=Mus musculus GN=Trmu PE=2 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.027e-11 Identity = 47/132 (35.61%), Postives = 66/132 (50.00%), Query Frame = 1 Query: 1 GFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISR---LQC--KVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVIL 381 G++ YT+GQR + PWYVVEKD V V+ R L R + W++ PP + R ++C + RH C L + +DG + V+ +GLA GQFA FY+G C+GSG IL Sbjct: 258 GWFLYTLGQRAKISGLREPWYVVEKDGTKGDVLVAPRVDHPALYRDLLRTNRVHWIAEEPPAALVRDKMMECHFRFRHQMALVPCVLTLN--QDGTVWVTAVKAV---RGLALGQFAVFYKGEECLGSGKIL 384
BLAST of DY257827 vs. ExPASy Swiss-Prot
Match: MNMA_BURTA (tRNA-specific 2-thiouridylase mnmA OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=mnmA PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.027e-11 Identity = 48/157 (30.57%), Postives = 71/157 (45.22%), Query Frame = 1 Query: 1 GFWFYTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVED--GGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVI---LESWDDQGFPVCEKALEIAR 438 G FYT GQR+G+ L G PW+V KD+ +N ++V + + + R G++ W++G PP + +R K R+ C + GGE ++V E + GQ A Y G C+G G+I D CE AL AR Sbjct: 231 GLAFYTFGQRKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLRSRELVAGNVSWVAGEPPSDGARCGAKTRYRQADAPCAFSSAAPGEAAGGERFSLV-FDEPQWAVTPGQSAVLYDGDVCLGGGIIEAAATGRPDAAPASCESALAEAR 386
BLAST of DY257827 vs. ExPASy Swiss-Prot
Match: MNMA_PSEAE (tRNA-specific 2-thiouridylase mnmA OS=Pseudomonas aeruginosa GN=mnmA PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.341e-11 Identity = 46/144 (31.94%), Postives = 69/144 (47.92%), Query Frame = 1 Query: 1 GFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVI--LESWDDQGFP 408 G ++TIGQRQGL + G PWYV+ KD++ NV+ V + R + W++ + E RL+ KVR+ +C ++E +G + E + + GQ FY G C+G GVI E+WD G P Sbjct: 238 GLMYHTIGQRQGLGIGGLKEAGDDPWYVLGKDLQRNVLLVGQGNDHPLLFSRALLASRIYWVNPVELERPRRLRAKVRYRQSDQDC--VLEKTAEGYRAV----FDEPQRAVTPGQSVVFYDGDVCLGGGVIETAEAWDFGGRP 375
BLAST of DY257827 vs. ExPASy Swiss-Prot
Match: MNMA_PSEAB (tRNA-specific 2-thiouridylase mnmA OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=mnmA PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.341e-11 Identity = 46/144 (31.94%), Postives = 69/144 (47.92%), Query Frame = 1 Query: 1 GFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVI--LESWDDQGFP 408 G ++TIGQRQGL + G PWYV+ KD++ NV+ V + R + W++ + E RL+ KVR+ +C ++E +G + E + + GQ FY G C+G GVI E+WD G P Sbjct: 238 GLMYHTIGQRQGLGIGGLKEAGDDPWYVLGKDLQRNVLLVGQGNDHPLLFSRALLASRIYWVNPVELERPRRLRAKVRYRQSDQDC--VLEKTAEGYRAV----FDEPQRAVTPGQSVVFYDGDVCLGGGVIETAEAWDFGGRP 375
BLAST of DY257827 vs. ExPASy Swiss-Prot
Match: MNMA_PSEA8 (tRNA-specific 2-thiouridylase mnmA OS=Pseudomonas aeruginosa (strain LESB58) GN=mnmA PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.341e-11 Identity = 46/144 (31.94%), Postives = 69/144 (47.92%), Query Frame = 1 Query: 1 GFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVI--LESWDDQGFP 408 G ++TIGQRQGL + G PWYV+ KD++ NV+ V + R + W++ + E RL+ KVR+ +C ++E +G + E + + GQ FY G C+G GVI E+WD G P Sbjct: 238 GLMYHTIGQRQGLGIGGLKEAGDDPWYVLGKDLQRNVLLVGQGNDHPLLFSRALLASRIYWVNPVELERPRRLRAKVRYRQSDQDC--VLEKTAEGYRAV----FDEPQRAVTPGQSVVFYDGDVCLGGGVIETAEAWDFGGRP 375
BLAST of DY257827 vs. ExPASy Swiss-Prot
Match: MNMA_CHLFF (tRNA-specific 2-thiouridylase mnmA OS=Chlamydophila felis (strain Fe/C-56) GN=mnmA PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.341e-11 Identity = 43/128 (33.59%), Postives = 65/128 (50.78%), Query Frame = 1 Query: 1 GFWFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVI 378 G +YTIGQR+GL L G P YVV KD++ N+V++ R + L W + P+ I+ KVR+ C +++ GE+ +V+ + + + GQ AFY G RC+G GVI Sbjct: 232 GAHYYTIGQRRGLDLGGSEKPCYVVGKDMEKNIVYIVRGEDHPLLYQTELTARELNWF--VSPKSITTCSAKVRYRSNDEECEILLR-----GEDEVLVRFASPVKAITPGQAIAFYDGERCLGGGVI 352 The following BLAST results are available for this feature:
BLAST of DY257827 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 51
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Sequences
The
following sequences are available for this feature:
EST sequence >DY257827 ID=DY257827; Name=DY257827; organism=Citrus clementina; type=EST; length=716bpback to top |