DY257827

Overview
NameDY257827
Unique NameDY257827
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257827 vs. ExPASy Swiss-Prot
Match: MTU1_HUMAN (Mitochondrial tRNA-specific 2-thiouridylase 1 OS=Homo sapiens GN=TRMU PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.702e-12
Identity = 48/132 (36.36%), Postives = 66/132 (50.00%), Query Frame = 1
Query:    1 GFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISR---LQC--KVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVIL 381
            G++ YT+GQR  +     PWYVVEKD     VFV+         R L R   + W++  PP  + R   ++C  + RH      C L +   +DG   +  VQ     + LA GQFA FY+G  C+GSG IL
Sbjct:  258 GWFLYTLGQRANIGGLREPWYVVEKDSVKGDVFVAPRTDHPALYRDLLRTSRVHWIAEEPPAALVRDKMMECHFRFRHQMALVPCVLTLN--QDGTVWVTAVQAV---RALATGQFAVFYKGDECLGSGKIL 384          
BLAST of DY257827 vs. ExPASy Swiss-Prot
Match: MTU1_PONAB (Mitochondrial tRNA-specific 2-thiouridylase 1 OS=Pongo abelii GN=TRMU PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.529e-12
Identity = 48/132 (36.36%), Postives = 66/132 (50.00%), Query Frame = 1
Query:    1 GFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISR---LQC--KVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVIL 381
            G++ YT+GQR  +     PWYVVEKD     VFV+         R L R   + W++  PP  + R   ++C  + RH      C L +   +DG   +  VQ     + LA GQFA FY+G  C+GSG IL
Sbjct:  259 GWFLYTLGQRANIGGLREPWYVVEKDSVKGDVFVAPRTDHPALYRDLLRTSRVHWIAEEPPAVLVRDKMMECHFRFRHQMALVPCVLTLN--QDGTVWVTAVQAV---RALATGQFAVFYKGDECLGSGKIL 385          
BLAST of DY257827 vs. ExPASy Swiss-Prot
Match: MNMA_PSEA7 (tRNA-specific 2-thiouridylase mnmA OS=Pseudomonas aeruginosa (strain PA7) GN=mnmA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.609e-12
Identity = 47/144 (32.64%), Postives = 69/144 (47.92%), Query Frame = 1
Query:    1 GFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVI--LESWDDQGFP 408
            G  ++TIGQRQGL + G       PWYV+ KD++ NV+ V +         R      + W++ +  E   RL+ KVR+     +C  ++E   DG   +      E  + +  GQ   FY G  C+G GVI   E+WD  G P
Sbjct:  238 GLMYHTIGQRQGLGIGGLKEAGDDPWYVLGKDLQRNVLLVGQGNDHPLLFSRALLASRIYWVNPVELERPRRLRAKVRYRQSDQDC--VLEKTADGYRAV----FDEPQRAVTPGQSVVFYDGEVCLGGGVIETAEAWDFGGRP 375          
BLAST of DY257827 vs. ExPASy Swiss-Prot
Match: MTU1_RAT (Mitochondrial tRNA-specific 2-thiouridylase 1 OS=Rattus norvegicus GN=Trmu PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.019e-12
Identity = 47/132 (35.61%), Postives = 66/132 (50.00%), Query Frame = 1
Query:    1 GFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISR---LQC--KVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVIL 381
            G++ YT+GQR  +     PWYVVEKD     V V+         R L R   + W++  PP  + R   ++C  + RH      C L +   +DG   +  V+     +GLA GQFA FY+G  C+GSG IL
Sbjct:  282 GWFLYTLGQRAKISGLSEPWYVVEKDGTKGDVLVAPRVDHPALYRDLLRTNRVHWIAEEPPAALVRDKMMECHFRFRHQMALVPCVLTLN--QDGTVWVTAVKAV---RGLALGQFAVFYKGEECLGSGKIL 408          
BLAST of DY257827 vs. ExPASy Swiss-Prot
Match: MTU1_MOUSE (Mitochondrial tRNA-specific 2-thiouridylase 1 OS=Mus musculus GN=Trmu PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.027e-11
Identity = 47/132 (35.61%), Postives = 66/132 (50.00%), Query Frame = 1
Query:    1 GFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISR---LQC--KVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVIL 381
            G++ YT+GQR  +     PWYVVEKD     V V+         R L R   + W++  PP  + R   ++C  + RH      C L +   +DG   +  V+     +GLA GQFA FY+G  C+GSG IL
Sbjct:  258 GWFLYTLGQRAKISGLREPWYVVEKDGTKGDVLVAPRVDHPALYRDLLRTNRVHWIAEEPPAALVRDKMMECHFRFRHQMALVPCVLTLN--QDGTVWVTAVKAV---RGLALGQFAVFYKGEECLGSGKIL 384          
BLAST of DY257827 vs. ExPASy Swiss-Prot
Match: MNMA_BURTA (tRNA-specific 2-thiouridylase mnmA OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=mnmA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.027e-11
Identity = 48/157 (30.57%), Postives = 71/157 (45.22%), Query Frame = 1
Query:    1 GFWFYTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVED--GGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVI---LESWDDQGFPVCEKALEIAR 438
            G  FYT GQR+G+ L G       PW+V  KD+ +N ++V + +     + R    G++ W++G PP + +R   K R+      C        +  GGE  ++V   E    +  GQ A  Y G  C+G G+I        D     CE AL  AR
Sbjct:  231 GLAFYTFGQRKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLRSRELVAGNVSWVAGEPPSDGARCGAKTRYRQADAPCAFSSAAPGEAAGGERFSLV-FDEPQWAVTPGQSAVLYDGDVCLGGGIIEAAATGRPDAAPASCESALAEAR 386          
BLAST of DY257827 vs. ExPASy Swiss-Prot
Match: MNMA_PSEAE (tRNA-specific 2-thiouridylase mnmA OS=Pseudomonas aeruginosa GN=mnmA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.341e-11
Identity = 46/144 (31.94%), Postives = 69/144 (47.92%), Query Frame = 1
Query:    1 GFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVI--LESWDDQGFP 408
            G  ++TIGQRQGL + G       PWYV+ KD++ NV+ V +         R      + W++ +  E   RL+ KVR+     +C  ++E   +G   +      E  + +  GQ   FY G  C+G GVI   E+WD  G P
Sbjct:  238 GLMYHTIGQRQGLGIGGLKEAGDDPWYVLGKDLQRNVLLVGQGNDHPLLFSRALLASRIYWVNPVELERPRRLRAKVRYRQSDQDC--VLEKTAEGYRAV----FDEPQRAVTPGQSVVFYDGDVCLGGGVIETAEAWDFGGRP 375          
BLAST of DY257827 vs. ExPASy Swiss-Prot
Match: MNMA_PSEAB (tRNA-specific 2-thiouridylase mnmA OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=mnmA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.341e-11
Identity = 46/144 (31.94%), Postives = 69/144 (47.92%), Query Frame = 1
Query:    1 GFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVI--LESWDDQGFP 408
            G  ++TIGQRQGL + G       PWYV+ KD++ NV+ V +         R      + W++ +  E   RL+ KVR+     +C  ++E   +G   +      E  + +  GQ   FY G  C+G GVI   E+WD  G P
Sbjct:  238 GLMYHTIGQRQGLGIGGLKEAGDDPWYVLGKDLQRNVLLVGQGNDHPLLFSRALLASRIYWVNPVELERPRRLRAKVRYRQSDQDC--VLEKTAEGYRAV----FDEPQRAVTPGQSVVFYDGDVCLGGGVIETAEAWDFGGRP 375          
BLAST of DY257827 vs. ExPASy Swiss-Prot
Match: MNMA_PSEA8 (tRNA-specific 2-thiouridylase mnmA OS=Pseudomonas aeruginosa (strain LESB58) GN=mnmA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.341e-11
Identity = 46/144 (31.94%), Postives = 69/144 (47.92%), Query Frame = 1
Query:    1 GFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVI--LESWDDQGFP 408
            G  ++TIGQRQGL + G       PWYV+ KD++ NV+ V +         R      + W++ +  E   RL+ KVR+     +C  ++E   +G   +      E  + +  GQ   FY G  C+G GVI   E+WD  G P
Sbjct:  238 GLMYHTIGQRQGLGIGGLKEAGDDPWYVLGKDLQRNVLLVGQGNDHPLLFSRALLASRIYWVNPVELERPRRLRAKVRYRQSDQDC--VLEKTAEGYRAV----FDEPQRAVTPGQSVVFYDGDVCLGGGVIETAEAWDFGGRP 375          
BLAST of DY257827 vs. ExPASy Swiss-Prot
Match: MNMA_CHLFF (tRNA-specific 2-thiouridylase mnmA OS=Chlamydophila felis (strain Fe/C-56) GN=mnmA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.341e-11
Identity = 43/128 (33.59%), Postives = 65/128 (50.78%), Query Frame = 1
Query:    1 GFWFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVI 378
            G  +YTIGQR+GL L G   P YVV KD++ N+V++ R        +       L W   + P+ I+    KVR+      C +++      GE+  +V+ +   + +  GQ  AFY G RC+G GVI
Sbjct:  232 GAHYYTIGQRRGLDLGGSEKPCYVVGKDMEKNIVYIVRGEDHPLLYQTELTARELNWF--VSPKSITTCSAKVRYRSNDEECEILLR-----GEDEVLVRFASPVKAITPGQAIAFYDGERCLGGGVI 352          
The following BLAST results are available for this feature:
BLAST of DY257827 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
MTU1_HUMAN2.702e-1236.36Mitochondrial tRNA-specific 2-thiouridylase 1 OS=H... [more]
MTU1_PONAB3.529e-1236.36Mitochondrial tRNA-specific 2-thiouridylase 1 OS=P... [more]
MNMA_PSEA74.609e-1232.64tRNA-specific 2-thiouridylase mnmA OS=Pseudomonas ... [more]
MTU1_RAT6.019e-1235.61Mitochondrial tRNA-specific 2-thiouridylase 1 OS=R... [more]
MTU1_MOUSE1.027e-1135.61Mitochondrial tRNA-specific 2-thiouridylase 1 OS=M... [more]
MNMA_BURTA1.027e-1130.57tRNA-specific 2-thiouridylase mnmA OS=Burkholderia... [more]
MNMA_PSEAE1.341e-1131.94tRNA-specific 2-thiouridylase mnmA OS=Pseudomonas ... [more]
MNMA_PSEAB1.341e-1131.94tRNA-specific 2-thiouridylase mnmA OS=Pseudomonas ... [more]
MNMA_PSEA81.341e-1131.94tRNA-specific 2-thiouridylase mnmA OS=Pseudomonas ... [more]
MNMA_CHLFF1.341e-1133.59tRNA-specific 2-thiouridylase mnmA OS=Chlamydophil... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1CH01ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257827 ID=DY257827; Name=DY257827; organism=Citrus clementina; type=EST; length=716bp
GGATTTTGGTTCTACACAATCGGTCAACGCCAAGGGCTACGTCTTCCTGG
AGGACCCTGGTATGTTGTTGAGAAGGATGTTAAGAACAATGTAGTGTTTG
TGTCGAGAAATTATTATTCGTTTGACAAGAAAAGACGCCTATTTCGTGTT
GGCTCTTTGAAATGGCTCAGTGGATTGCCTCCAGAGGAAATCAGTCGGCT
TCAGTGTAAGGTCAGACATGGTCCTGGTTTCTACAATTGCAATTTGATGA
TTGAACATGTTGAAGATGGTGGTGAGAACATTGCAGTTGTCCAGTTATCA
GAAGACGATCAAGGACTGGCAGCCGGCCAGTTTGCTGCCTTCTACCAGGG
AACAAGATGCATTGGCTCTGGTGTGATTTTGGAATCTTGGGATGATCAGG
GTTTCCCTGTATGTGAAAAAGCTCTCGAGATTGCAAGAATGGAAGATAAA
TCAAAGCTTGGGAAACCCATAAAGATAAAGGTAAAACCGGAGACTCCTGA
GGAGTTTAATTCTAATAAAGGTGTTCAAAGTAGTAGAAACTTGGTTAATG
CTCAAAACAGCATAGCAGAGAAAAGCAATACAACATCTCAAGAAGAAGCA
ATTTCTAGATTCCCGATGAATTGGTTGCAAAAGCTTAGAGAAAAATGGCC
ACGTATATTGTAGCTTCCATCATTTGTAGGCTTCAGCTTTGCTATTTCAT
GAGATGCCTATTCTTT
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