DY257827

Overview
NameDY257827
Unique NameDY257827
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10018 contig Ccv1_Contig10018:4..719. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257827 vs. ExPASy Swiss-Prot
Match: MNMA_BACSK (tRNA-specific 2-thiouridylase mnmA OS=Bacillus clausii (strain KSM-K16) GN=mnmA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.751e-11
Identity = 40/128 (31.25%), Postives = 63/128 (49.22%), Query Frame = 1
Query:    1 GFWFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVI 378
            G  +YT+GQRQGL + G   PW+V++KD++ NV+ V + Y+             + W++    E  S   CK +      +  + +   EDG    A +Q  +  + +  GQ    Y+G RCIG GVI
Sbjct:  234 GLMYYTLGQRQGLGIGGAGEPWFVIDKDLERNVLIVGQGYHHPGLYSDGLWATDMNWIA--KEERTSPFTCKAKFRYRQEDQGVTVFPKEDGR---AFIQFDQPQRAITPGQAVVLYEGDRCIGGGVI 356          
BLAST of DY257827 vs. ExPASy Swiss-Prot
Match: MNMA_CHLAB (tRNA-specific 2-thiouridylase mnmA OS=Chlamydophila abortus GN=mnmA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.287e-11
Identity = 42/128 (32.81%), Postives = 65/128 (50.78%), Query Frame = 1
Query:    1 GFWFYTIGQRQGLRLPGG--PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVI 378
            G  +YTIGQR+GL + G   P YVV KD++ N+V++ R        ++      L W   + PE I+R   KVR+      C ++      G ++   V+ +   + +  GQ  AFY G RC+G G+I
Sbjct:  232 GAHYYTIGQRRGLDIGGSEKPCYVVGKDMEKNIVYIVRGEDHPLLYQQELTAKELNWF--VSPESITRCSAKVRYRSPDEECEIL----HTGTQDTVRVRFTSPVKAITPGQTIAFYDGERCLGGGII 353          
BLAST of DY257827 vs. ExPASy Swiss-Prot
Match: MNMA_ALCBS (tRNA-specific 2-thiouridylase mnmA OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=mnmA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.287e-11
Identity = 42/135 (31.11%), Postives = 61/135 (45.19%), Query Frame = 1
Query:    1 GFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVILES 387
            G  +YT+GQRQGL + G       PWYV +KD++ NV+   +         R+     ++W++   P   +RL  K R+      C      V D GE    V   E  + +  GQ   FY G  C+G  VI E+
Sbjct:  234 GLMYYTLGQRQGLGIGGLASASEAPWYVAKKDLERNVLIAVQGTDHPLLYSRVLNSAPMQWVALEAPALPARLTAKTRYRQPDQGCT-----VSDAGEGRVTVTFDEPQRAVTPGQSVVFYDGPVCLGGAVIEET 363          
BLAST of DY257827 vs. ExPASy Swiss-Prot
Match: MNMA_NITEU (tRNA-specific 2-thiouridylase mnmA OS=Nitrosomonas europaea GN=mnmA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.987e-11
Identity = 44/137 (32.12%), Postives = 63/137 (45.99%), Query Frame = 1
Query:    1 GFWFYTIGQRQGLRLPGG------PWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVILESWD 393
            G  +YTIGQRQGL + G       PW+V  KD+K NV++V + +      R       L W+SG PP +      K+R+      C   I H E    +   +  +    G+  GQ    Y+   C+G GVI+ S D
Sbjct:  231 GVMYYTIGQRQGLGIGGTRQGSEQPWFVSGKDIKKNVLYVVQGHDHPALLRSSLTAADLSWISGTPPHQNWVYAAKIRYRQTDAPC--AITHFE---HDSCQIGFAAPQWGITPGQSVVVYESKVCLGGGVIIGSND 362          
BLAST of DY257827 vs. ExPASy Swiss-Prot
Match: MNMA_FRATW (tRNA-specific 2-thiouridylase mnmA OS=Francisella tularensis subsp. tularensis (strain WY96-3418) GN=mnmA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.987e-11
Identity = 41/133 (30.83%), Postives = 66/133 (49.62%), Query Frame = 1
Query:    1 GFWFYTIGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVIL 381
            G  +YTIGQRQGL +      P  PW+  +KD++NNV+   + +      ++  +   L W++G+ P +  R   KVR+     +C   +E  +DG  N   V   +  + +  GQ   FY    C+G GVI+
Sbjct:  232 GLMYYTIGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSWVAGMAPADKFRCAAKVRYRQKDQSCE--VEVNQDGSVN---VTFDQPQRAITPGQSVVFYIDDVCLGGGVII 359          
BLAST of DY257827 vs. ExPASy Swiss-Prot
Match: MNMA_FRATT (tRNA-specific 2-thiouridylase mnmA OS=Francisella tularensis subsp. tularensis GN=mnmA PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.987e-11
Identity = 41/133 (30.83%), Postives = 66/133 (49.62%), Query Frame = 1
Query:    1 GFWFYTIGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVIL 381
            G  +YTIGQRQGL +      P  PW+  +KD++NNV+   + +      ++  +   L W++G+ P +  R   KVR+     +C   +E  +DG  N   V   +  + +  GQ   FY    C+G GVI+
Sbjct:  232 GLMYYTIGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSWVAGMAPADKFRCAAKVRYRQKDQSCE--VEVNQDGSVN---VTFDQPQRAITPGQSVVFYIDDVCLGGGVII 359          
BLAST of DY257827 vs. ExPASy Swiss-Prot
Match: MNMA_FRATO (tRNA-specific 2-thiouridylase mnmA OS=Francisella tularensis subsp. holarctica (strain OSU18) GN=mnmA PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.987e-11
Identity = 41/133 (30.83%), Postives = 66/133 (49.62%), Query Frame = 1
Query:    1 GFWFYTIGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVIL 381
            G  +YTIGQRQGL +      P  PW+  +KD++NNV+   + +      ++  +   L W++G+ P +  R   KVR+     +C   +E  +DG  N   V   +  + +  GQ   FY    C+G GVI+
Sbjct:  232 GLMYYTIGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSWVAGMAPADKFRCAAKVRYRQKDQSCE--VEVNQDGSVN---VTFDQPQRAITPGQSVVFYIDDVCLGGGVII 359          
BLAST of DY257827 vs. ExPASy Swiss-Prot
Match: MNMA_FRATN (tRNA-specific 2-thiouridylase mnmA OS=Francisella tularensis subsp. novicida (strain U112) GN=mnmA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.987e-11
Identity = 41/133 (30.83%), Postives = 66/133 (49.62%), Query Frame = 1
Query:    1 GFWFYTIGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVIL 381
            G  +YTIGQRQGL +      P  PW+  +KD++NNV+   + +      ++  +   L W++G+ P +  R   KVR+     +C   +E  +DG  N   V   +  + +  GQ   FY    C+G GVI+
Sbjct:  232 GLMYYTIGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSWVAGMAPADKFRCAAKVRYRQKDQSCE--VEVNQDGSVN---VTFDQPQRAITPGQSVVFYIDDVCLGGGVII 359          
BLAST of DY257827 vs. ExPASy Swiss-Prot
Match: MNMA_FRATM (tRNA-specific 2-thiouridylase mnmA OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=mnmA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.987e-11
Identity = 41/133 (30.83%), Postives = 66/133 (49.62%), Query Frame = 1
Query:    1 GFWFYTIGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVIL 381
            G  +YTIGQRQGL +      P  PW+  +KD++NNV+   + +      ++  +   L W++G+ P +  R   KVR+     +C   +E  +DG  N   V   +  + +  GQ   FY    C+G GVI+
Sbjct:  232 GLMYYTIGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSWVAGMAPADKFRCAAKVRYRQKDQSCE--VEVNQDGSVN---VTFDQPQRAITPGQSVVFYIDDVCLGGGVII 359          
BLAST of DY257827 vs. ExPASy Swiss-Prot
Match: MNMA_FRATH (tRNA-specific 2-thiouridylase mnmA OS=Francisella tularensis subsp. holarctica (strain LVS) GN=mnmA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.987e-11
Identity = 41/133 (30.83%), Postives = 66/133 (49.62%), Query Frame = 1
Query:    1 GFWFYTIGQRQGLRL------PGGPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVIL 381
            G  +YTIGQRQGL +      P  PW+  +KD++NNV+   + +      ++  +   L W++G+ P +  R   KVR+     +C   +E  +DG  N   V   +  + +  GQ   FY    C+G GVI+
Sbjct:  232 GLMYYTIGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSWVAGMAPADKFRCAAKVRYRQKDQSCE--VEVNQDGSVN---VTFDQPQRAITPGQSVVFYIDDVCLGGGVII 359          
The following BLAST results are available for this feature:
BLAST of DY257827 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
MNMA_BACSK1.751e-1131.25tRNA-specific 2-thiouridylase mnmA OS=Bacillus cla... [more]
MNMA_CHLAB2.287e-1132.81tRNA-specific 2-thiouridylase mnmA OS=Chlamydophil... [more]
MNMA_ALCBS2.287e-1131.11tRNA-specific 2-thiouridylase mnmA OS=Alcanivorax ... [more]
MNMA_NITEU2.987e-1132.12tRNA-specific 2-thiouridylase mnmA OS=Nitrosomonas... [more]
MNMA_FRATW2.987e-1130.83tRNA-specific 2-thiouridylase mnmA OS=Francisella ... [more]
MNMA_FRATT2.987e-1130.83tRNA-specific 2-thiouridylase mnmA OS=Francisella ... [more]
MNMA_FRATO2.987e-1130.83tRNA-specific 2-thiouridylase mnmA OS=Francisella ... [more]
MNMA_FRATN2.987e-1130.83tRNA-specific 2-thiouridylase mnmA OS=Francisella ... [more]
MNMA_FRATM2.987e-1130.83tRNA-specific 2-thiouridylase mnmA OS=Francisella ... [more]
MNMA_FRATH2.987e-1130.83tRNA-specific 2-thiouridylase mnmA OS=Francisella ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1CH01ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257827 ID=DY257827; Name=DY257827; organism=Citrus clementina; type=EST; length=716bp
GGATTTTGGTTCTACACAATCGGTCAACGCCAAGGGCTACGTCTTCCTGG
AGGACCCTGGTATGTTGTTGAGAAGGATGTTAAGAACAATGTAGTGTTTG
TGTCGAGAAATTATTATTCGTTTGACAAGAAAAGACGCCTATTTCGTGTT
GGCTCTTTGAAATGGCTCAGTGGATTGCCTCCAGAGGAAATCAGTCGGCT
TCAGTGTAAGGTCAGACATGGTCCTGGTTTCTACAATTGCAATTTGATGA
TTGAACATGTTGAAGATGGTGGTGAGAACATTGCAGTTGTCCAGTTATCA
GAAGACGATCAAGGACTGGCAGCCGGCCAGTTTGCTGCCTTCTACCAGGG
AACAAGATGCATTGGCTCTGGTGTGATTTTGGAATCTTGGGATGATCAGG
GTTTCCCTGTATGTGAAAAAGCTCTCGAGATTGCAAGAATGGAAGATAAA
TCAAAGCTTGGGAAACCCATAAAGATAAAGGTAAAACCGGAGACTCCTGA
GGAGTTTAATTCTAATAAAGGTGTTCAAAGTAGTAGAAACTTGGTTAATG
CTCAAAACAGCATAGCAGAGAAAAGCAATACAACATCTCAAGAAGAAGCA
ATTTCTAGATTCCCGATGAATTGGTTGCAAAAGCTTAGAGAAAAATGGCC
ACGTATATTGTAGCTTCCATCATTTGTAGGCTTCAGCTTTGCTATTTCAT
GAGATGCCTATTCTTT
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