DY257827

Overview
NameDY257827
Unique NameDY257827
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10018 contig Ccv1_Contig10018:4..719. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DY257827 vs. ExPASy Swiss-Prot
Match: MNMA_XANAC (tRNA-specific 2-thiouridylase mnmA OS=Xanthomonas axonopodis pv. citri GN=mnmA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.691e-11
Identity = 39/132 (29.55%), Postives = 64/132 (48.48%), Query Frame = 1 
Query:    1 GFWFYTIGQRQGLRLPG------GPWYVVEKDVKNNVVFVSRNYYSFDKKRRLFRVGSLKWLSGLPPEEISRLQCKVRHGPGFYNCNLMIEHVEDGGENIAVVQLSEDDQGLAAGQFAAFYQGTRCIGSGVI 378
            G +++T+GQR+GL + G       PWYVV KDV NNV++V ++  S   + R  +     W++G PP        + R+     +C + ++  +DG      V+     + +  GQ    Y G  C+G  VI
Sbjct:  230 GVFYFTLGQREGLNIGGVRGRAAAPWYVVGKDVANNVLYVDQDRDSPLLQSRWLQSEQAHWVTGAPPARRFSCTAQTRYRQPDESCTVDVQ--DDGS---VQVRFERPQRAVTPGQSLVLYDGEECLGGAVI 356
The following BLAST results are available for this feature:
BLAST of DY257827 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
MNMA_XANAC8.691e-1129.55tRNA-specific 2-thiouridylase mnmA OS=Xanthomonas ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1CH01ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257827 ID=DY257827; Name=DY257827; organism=Citrus clementina; type=EST; length=716bp
GGATTTTGGTTCTACACAATCGGTCAACGCCAAGGGCTACGTCTTCCTGG
AGGACCCTGGTATGTTGTTGAGAAGGATGTTAAGAACAATGTAGTGTTTG
TGTCGAGAAATTATTATTCGTTTGACAAGAAAAGACGCCTATTTCGTGTT
GGCTCTTTGAAATGGCTCAGTGGATTGCCTCCAGAGGAAATCAGTCGGCT
TCAGTGTAAGGTCAGACATGGTCCTGGTTTCTACAATTGCAATTTGATGA
TTGAACATGTTGAAGATGGTGGTGAGAACATTGCAGTTGTCCAGTTATCA
GAAGACGATCAAGGACTGGCAGCCGGCCAGTTTGCTGCCTTCTACCAGGG
AACAAGATGCATTGGCTCTGGTGTGATTTTGGAATCTTGGGATGATCAGG
GTTTCCCTGTATGTGAAAAAGCTCTCGAGATTGCAAGAATGGAAGATAAA
TCAAAGCTTGGGAAACCCATAAAGATAAAGGTAAAACCGGAGACTCCTGA
GGAGTTTAATTCTAATAAAGGTGTTCAAAGTAGTAGAAACTTGGTTAATG
CTCAAAACAGCATAGCAGAGAAAAGCAATACAACATCTCAAGAAGAAGCA
ATTTCTAGATTCCCGATGAATTGGTTGCAAAAGCTTAGAGAAAAATGGCC
ACGTATATTGTAGCTTCCATCATTTGTAGGCTTCAGCTTTGCTATTTCAT
GAGATGCCTATTCTTT
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