DY257829

Overview
NameDY257829
Unique NameDY257829
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1326
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257829 vs. ExPASy Swiss-Prot
Match: IF2B_SCHPO (Probable eukaryotic translation initiation factor 2 subunit beta OS=Schizosaccharomyces pombe GN=tif212 PE=1 SV=2)

HSP 1 Score: 207.994 bits (528), Expect = 1.040e-52
Identity = 120/289 (41.52%), Postives = 157/289 (54.33%), Query Frame = 3
Query:   18 PQAVSDGREDLSFDSRNSTMTDENQVDVKDEVAEL----APFDPTXXXXXXXVVIQDPSDDSVDKLAEITETSSVSEGLESTFTGLXXXXXXPVESSLLNDEIGDAGDDLDGHVGEDDEADGSGGPRQRYPWEGSDRDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKAGFKARVGRR 872
            P+A S G  D     R S+  D      + EV EL    +               ++ ++D   +  E+  +S   +  +     L        E  L     GDA  DL     + +           + W  SDRDY Y ELL R F +LR NNPELAG++R+  + PP V REG KKT+F N  D+ K MHR  DHV+ FL AELGTSGS+DG  RL++KGRF  K  E +LRRY+ EYV C  CKSPDTIL+KENR+FF+ CE CGS RSV  IK G++A++G+R
Sbjct:   42 PEASSAGATDEDDSERKSSAKDLTTPVTEGEVDELKDMFSSMKKKKKSKKSSASAEEQTEDITTESGELDFSSMKKKKKKKKSADLSAF-----EKELEASSTGDATSDLSKQTFDSENMG-------EHAWLKSDRDYYYPELLNRFFTLLRTNNPELAGEKRKYTIVPPSVHREG-KKTIFANISDISKRMHRSLDHVIQFLFAELGTSGSVDGSSRLIIKGRFQQKQIENVLRRYIVEYVTCKTCKSPDTILTKENRIFFMTCEACGSVRSVQAIKTGYQAQIGKR 317          
BLAST of DY257829 vs. ExPASy Swiss-Prot
Match: IF2B_DICDI (Eukaryotic translation initiation factor 2 subunit 2 OS=Dictyostelium discoideum GN=eif2s2 PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 2.930e-47
Identity = 84/164 (51.22%), Postives = 121/164 (73.78%), Query Frame = 3
Query:  363 ADGSGGPRQRYPWEGSDRDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKAGFK 854
            +DG    +   PW G+DRDY+Y EL  R++++L+ NNP+L  D++RT M+PPQV+REGTKKT++ NF ++C T++R+ +HV  ++ AELGT+GS+DG QRLV++GRF     E ++R Y++EYV C  CKSP+T+L + NRL+FL C  C S RSVA IK G +
Sbjct:  144 SDGDTFVQGTIPWAGTDRDYKYSELTYRIYHLLQANNPDLISDQKRT-MKPPQVMREGTKKTIWANFAEICGTLNRKVEHVYNYVFAELGTNGSIDGNQRLVIRGRFKTSQIEIVIRHYISEYVACRNCKSPNTVLERNNRLYFLCCNACNSKRSVAVIKKGLE 306          
BLAST of DY257829 vs. ExPASy Swiss-Prot
Match: IF2B_CAEEL (Eukaryotic translation initiation factor 2 subunit 2 OS=Caenorhabditis elegans GN=K04G2.1 PE=3 SV=4)

HSP 1 Score: 184.111 bits (466), Expect = 1.608e-45
Identity = 84/159 (52.83%), Postives = 118/159 (74.21%), Query Frame = 3
Query:  402 EGSDRDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKAGFKARVGRRNA 878
            +G+  DY YEE L  V+ ++++ NP+ AGD+++  ++ P+V R G+KKT F NF+++C+ M RQ  HV+ FLLAELGT+GS+DG   L+VKGR+  K FE +LR+Y+ EYV+C  CKSP+T L+K+ RLFFL+C  CGS  SV  IK+GFKA VG+R A
Sbjct:   81 KGAWPDYTYEEALTLVYQVMKDKNPDFAGDKKKFAIKLPEVARAGSKKTAFSNFLEICRLMKRQDKHVLQFLLAELGTTGSIDGSNCLIVKGRWQQKQFESVLRKYIKEYVMCHTCKSPETQLTKDTRLFFLQCTNCGSRCSVTAIKSGFKAVVGKRAA 239          
BLAST of DY257829 vs. ExPASy Swiss-Prot
Match: IF2B_YEAST (Eukaryotic translation initiation factor 2 subunit beta OS=Saccharomyces cerevisiae GN=SUI3 PE=1 SV=2)

HSP 1 Score: 175.252 bits (443), Expect = 7.468e-43
Identity = 89/153 (58.17%), Postives = 111/153 (72.55%), Query Frame = 3
Query:  426 YEELLGRVFNILRENNPELAGDRRRTVMR--PPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKE--NRLFFLRCEKCGSGRSVAPIKAGFKARVGRR 872
            Y ELL R FNILR NNPELAGDR     R  PP  LR+G KKT+F N  D+ + +HR P+H++ +L AELGTSGS+DGQ+RLV+KG+F  K  E +LRRY+ EYV C  CKS +T L +E  NRLFF+ C+ CGS RSV+ IK GF+A VG+R
Sbjct:  131 YSELLSRFFNILRTNNPELAGDRSGPKFRIPPPVCLRDG-KKTIFSNIQDIAEKLHRSPEHLIQYLFAELGTSGSVDGQKRLVIKGKFQSKQMENVLRRYILEYVTCKTCKSINTELKREQSNRLFFMVCKSCGSTRSVSSIKTGFQATVGKR 282          
BLAST of DY257829 vs. ExPASy Swiss-Prot
Match: IF2B_METKA (Translation initiation factor 2 subunit beta OS=Methanopyrus kandleri GN=eif2b PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 8.585e-23
Identity = 61/142 (42.96%), Postives = 86/142 (60.56%), Query Frame = 3
Query:  417 DYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIK 842
            +Y+YEELL R +    E  PE   + RR  M  P+V  EG K TV  NF ++ K + R P+H+  + L ELGT+G +DG  RL++ G + PK  E  L+ YV E+V+C  C  PDT L +E+R + L+CE CG+  SV  +K
Sbjct:    3 EYDYEELLERAY----EQLPEEVLEDRRFEMPKPKVSVEG-KTTVIRNFKEISKKLDRDPEHITKYFLKELGTAGHVDGG-RLILHGVYHPKLVEEELKNYVEEFVLCPECGKPDTKLVREDRQWILKCEACGAWSSVRRLK 138          
BLAST of DY257829 vs. ExPASy Swiss-Prot
Match: IF2B_THEGJ (Translation initiation factor 2 subunit beta OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=eIF2B PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.261e-22
Identity = 50/133 (37.59%), Postives = 82/133 (61.65%), Query Frame = 3
Query:  420 YEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGS 818
            Y++E LL + +    E  PE     +     PP V+     +T+  NF+D+ + M+R P H++ F+L E+ T+G+L+G+ R++++GRF P      L++Y+ EYVIC  C SPDT + K +R +FL+CE CG+
Sbjct:    8 YDFERLLDKAY----EELPENVKSHKSRFEVPPAVVTIAGNRTIIENFVDIAEAMNRDPSHLLKFILREVATAGTLEGR-RVILQGRFTPYLIANKLKKYLKEYVICPVCGSPDTKIIKRDRFYFLKCEACGA 135          
BLAST of DY257829 vs. ExPASy Swiss-Prot
Match: IF2B_PYRHO (Translation initiation factor 2 subunit beta OS=Pyrococcus horikoshii GN=eif2b PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.240e-21
Identity = 54/133 (40.60%), Postives = 84/133 (63.16%), Query Frame = 3
Query:  420 YEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGS 818
            Y+YE+LL + +  L EN   +   + R  +    V  EG K T+  NF D+ + ++R P H++ FLL E+ T+G+L+G+ R+V++GRF P      L++Y+ EYVIC  C SPDT + K +R +FL+CE CG+
Sbjct:    6 YDYEKLLEKAYEELPEN---VKHHKSRFEVPGALVTIEGNK-TIIENFKDIAEALNRDPQHLLKFLLREIATAGTLEGK-RVVLQGRFTPYLIANKLKKYIKEYVICPVCGSPDTKIIKRDRFYFLKCEACGA 133          
BLAST of DY257829 vs. ExPASy Swiss-Prot
Match: IF2B_PYRAB (Translation initiation factor 2 subunit beta OS=Pyrococcus abyssi GN=eif2b PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.114e-21
Identity = 53/133 (39.85%), Postives = 84/133 (63.16%), Query Frame = 3
Query:  420 YEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGS 818
            Y+YE+LL + +  L EN   +   + R  +    V  EG K T+  NF D+ + ++R P H++ FLL E+ T+G+L+G+ R+V++GRF P      +++Y+ EYVIC  C SPDT + K +R +FL+CE CG+
Sbjct:    6 YDYEKLLEKAYEELPEN---VKHHKSRFEVPGALVTIEGNK-TIIENFKDIAEALNRDPQHLLKFLLREIATAGTLEGK-RVVLQGRFTPYLIANKIKKYIKEYVICPVCGSPDTKIIKRDRFYFLKCEACGA 133          
BLAST of DY257829 vs. ExPASy Swiss-Prot
Match: IF2B_PYRFU (Translation initiation factor 2 subunit beta OS=Pyrococcus furiosus GN=eif2b PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 6.152e-21
Identity = 54/133 (40.60%), Postives = 82/133 (61.65%), Query Frame = 3
Query:  420 YEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGS 818
            Y+YE+LL + +  L EN   +   + R  +    V  EG K T+  NF D+   ++R P H++ FLL E+ T+G+L+G+ R+V++GRF P      L++Y+ EYVIC  C SPDT + K +R  FL+CE CG+
Sbjct:    6 YDYEKLLEKAYQELPEN---VKHHKSRFEVPGALVTIEGNK-TIIENFKDIADALNRDPQHLLKFLLREIATAGTLEGR-RVVLQGRFTPYLIANKLKKYIKEYVICPVCGSPDTKIIKRDRFHFLKCEACGA 133          
BLAST of DY257829 vs. ExPASy Swiss-Prot
Match: IF2B_METLZ (Translation initiation factor 2 subunit beta OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=eIF2B PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 6.152e-21
Identity = 59/140 (42.14%), Postives = 81/140 (57.86%), Query Frame = 3
Query:  426 YEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKA 845
            YE++L   ++ + E  P   G+R   VM   ++  EG K TV  NF D+  +++R  DH M F+L ELGT+G +DG  R V  G+F    F+ IL  YV +YVIC  C  PDT L K++R+  L CE CGS R +   KA
Sbjct:    5 YEDMLKAAYSGIGE--PTETGER--FVMPKAKIYIEG-KTTVLENFSDIVDSLNRDKDHFMKFILGELGTAGKIDGN-RAVFNGKFEQAQFDAILETYVGDYVICSECGRPDTKLVKDDRVLMLLCEACGSKRPIRKRKA 138          
The following BLAST results are available for this feature:
BLAST of DY257829 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
IF2B_SCHPO1.040e-5241.52Probable eukaryotic translation initiation factor ... [more]
IF2B_DICDI2.930e-4751.22Eukaryotic translation initiation factor 2 subunit... [more]
IF2B_CAEEL1.608e-4552.83Eukaryotic translation initiation factor 2 subunit... [more]
IF2B_YEAST7.468e-4358.17Eukaryotic translation initiation factor 2 subunit... [more]
IF2B_METKA8.585e-2342.96Translation initiation factor 2 subunit beta OS=Me... [more]
IF2B_THEGJ4.261e-2237.59Translation initiation factor 2 subunit beta OS=Th... [more]
IF2B_PYRHO1.240e-2140.60Translation initiation factor 2 subunit beta OS=Py... [more]
IF2B_PYRAB2.114e-2139.85Translation initiation factor 2 subunit beta OS=Py... [more]
IF2B_PYRFU6.152e-2140.60Translation initiation factor 2 subunit beta OS=Py... [more]
IF2B_METLZ6.152e-2142.14Translation initiation factor 2 subunit beta OS=Me... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1CH04ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257829 ID=DY257829; Name=DY257829; organism=Citrus clementina; type=EST; length=1326bp
GGAATTCATTTCTTTAGCCGCAGGCCGTCAGCGACGGAAGAGAAGATCTC
AGTTTCGATTCTAGAAACTCGACTATGACGGACGAAAATCAAGTAGATGT
GAAGGACGAGGTGGCAGAACTTGCCCCCTTCGATCCTACTAAAAAGAAGA
AGAAGAAGAAGGTTGTAATACAGGATCCTTCAGATGATTCTGTGGACAAA
CTGGCCGAGATAACTGAAACTTCATCAGTCTCTGAGGGGCTTGAAAGTAC
TTTTACTGGTTTGAAAAAGAAGAAGAAGAAACCAGTAGAAAGCAGTCTAT
TGAACGATGAGATTGGGGATGCAGGAGACGATTTGGATGGTCACGTGGGT
GAGGATGATGAAGCTGATGGAAGTGGTGGTCCACGGCAGCGTTATCCATG
GGAAGGGAGTGATCGCGACTATGAATATGAGGAGCTTCTTGGTAGGGTCT
TTAACATCCTCCGAGAGAATAATCCTGAACTTGCAGGAGATAGGCGTAGA
ACAGTCATGAGACCTCCACAAGTTCTTCGTGAAGGAACAAAGAAAACTGT
TTTTGTCAATTTCATGGATCTCTGCAAGACCATGCATCGGCAGCCAGATC
ATGTCATGACATTTTTGCTTGCTGAACTGGGGACAAGTGGGTCACTGGAC
GGACAGCAAAGACTGGTCGTGAAGGGCCGATTTGCTCCCAAGAATTTTGA
AGGGATACTGCGTCGATATGTCAATGAATATGTCATCTGTCTTGGGTGCA
AAAGTCCTGACACGATACTTTCAAAGGAAAACCGCCTCTTCTTTCTCAGA
TGTGAGAAGTGTGGTTCTGGACGATCAGTTGCTCCCATCAAAGCTGGTTT
CAAGGCACGTGTTGGTCGTAGAAATGCTGGAATGTGATCTTGTGGTCCTG
CTTTTCTCAGCATTTTGAAAAAAAAGAGGTTTGTTTTCATTTTTACCTTA
TGCGTTTTACTACTAATTTGGTTTTGACTAATTGAATTTACCTAGGCCGG
GAAAATATTGGTTATGGATGACCCTTTGATAACTACAATGGATTGATAAA
TCCTTTTTTTCCCTTCCGGGGGGAAGGGCCAATTTTTTGAGCCCTCCCCC
CCAAAAAAAATTTTTTTGGGGACAGAAGGGCCACAAAGGGGGGCAAAAAA
AAAAAAAAAAAAAAGAAGAGGAAAAACCCCGTTTGGGGGCCGCCCCCGCG
CGGCCCCCCCCCACAAACTTAAAAAAACCAAAAAAAAAAAATTAAAGGTG
GGGGGGGGGCCGCCAAAATTTTTGGCGGGGTCCCTCTTGGGTGGGCGGAA
CTTTTTCTCCCCCCCTTCCTCATAAG
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