DY257829

Overview
NameDY257829
Unique NameDY257829
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1326
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY257829_ssr144 microsatellite DY257829_ssr144:144..161. BLAST: Citrus ESTs to Prunus persica proteins V1
DY257829_ssr267 microsatellite DY257829_ssr267:267..278. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY257829 vs. ExPASy Swiss-Prot
Match: IF2B_PYRKO (Translation initiation factor 2 subunit beta OS=Pyrococcus kodakaraensis GN=eif2b PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.790e-20
Identity = 50/133 (37.59%), Postives = 84/133 (63.16%), Query Frame = 3
Query:  420 YEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGS 818
            Y++E+LL + +  L EN   +     R  + P QV   G + T+  NF+D+ + M+R P+H++ F+L E+ T+G+L+G+ R +++GRF P      +++Y+ E+VIC  C SPDT + K+ R  FL+CE CG+
Sbjct:    8 YDFEKLLDKAYEELPEN---VKHHHSRFEVPPAQVTIAGNR-TIIENFVDIAEAMNRDPNHLLKFILREVATAGTLEGR-RAILQGRFTPYLIANKMKKYLKEFVICPVCGSPDTKIIKKGRFHFLKCEACGA 135          
BLAST of DY257829 vs. ExPASy Swiss-Prot
Match: IF2B_METTP (Translation initiation factor 2 subunit beta OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=eIF2B PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 3.988e-20
Identity = 56/132 (42.42%), Postives = 78/132 (59.09%), Query Frame = 3
Query:  474 PELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKAGFKARVGR 869
            P   G + R  +  P++  EG K TV  NF  +   ++R PDH+M FLL ELGT+G ++G  R V +G+F  +  +  +  YV+EYVIC  CK PDT L K +R+  L+C+ CG+ R V   KA  KA V R
Sbjct:   16 PAAKGTKERFQIPVPRIFYEG-KTTVLDNFAAIADALNRDPDHLMKFLLQELGTAGKIEGH-RGVFQGKFTEQAIQNQIAAYVDEYVICSECKLPDTHLIKSDRVLMLKCDACGAHRPVKKRKA--KAVVAR 143          
BLAST of DY257829 vs. ExPASy Swiss-Prot
Match: IF2B_METMA (Translation initiation factor 2 subunit beta OS=Methanosarcina mazei GN=eif2b PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 8.884e-20
Identity = 53/137 (38.69%), Postives = 80/137 (58.39%), Query Frame = 3
Query:  420 YEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSV 830
            Y+YEELL R  + +    P+      R V+  P++  EG K T+  NF ++  T++R PDH+M +L  ELGT+G ++G  R V +GRF        ++ YV+EYV+C  C  PDT L + +R+  L+C  CG+ R V
Sbjct:    2 YDYEELLNRAMSKM----PDTETTDARFVIPEPKLFSEG-KTTILDNFGNIADTLNRDPDHLMKYLTRELGTAGKIEGT-RAVFQGRFTRAQLSDNIQAYVDEYVMCSECGRPDTQLVRVDRVLVLKCSACGAHRPV 132          
BLAST of DY257829 vs. ExPASy Swiss-Prot
Match: IF2B_METAC (Translation initiation factor 2 subunit beta OS=Methanosarcina acetivorans GN=eif2b PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.979e-19
Identity = 53/137 (38.69%), Postives = 79/137 (57.66%), Query Frame = 3
Query:  420 YEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSV 830
            Y+YEELL R    +    P+      R V+  P++  EG K T+  NF ++  T++R PDH+M +L  ELGT+G ++G  R V +GRF        ++ YV+EYV+C  C  PDT L + +R+  L+C  CG+ R V
Sbjct:    2 YDYEELLNRAMAKM----PDTETTDARFVIPEPKLFSEG-KTTILDNFGNIADTLNRDPDHLMKYLTRELGTAGKIEGT-RAVFQGRFTRAQISDNIQAYVDEYVMCSECGRPDTQLVRVDRVLVLKCSACGAHRPV 132          
BLAST of DY257829 vs. ExPASy Swiss-Prot
Match: IF2B_HALMA (Translation initiation factor 2 subunit beta OS=Haloarcula marismortui GN=eif2B PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.979e-19
Identity = 51/132 (38.64%), Postives = 71/132 (53.79%), Query Frame = 3
Query:  423 EYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGS 818
            EY+++L R      E  PE+ G   R  +  P + +EG   TV+ NF   C  + R+ DHVM FL  +LGTSG +D   R+ + G F     E  +  YV+E+V+C  C  PDT L +E     LRCE CG+
Sbjct:    2 EYDDMLDRAM----EETPEIDGTSERFEVPDPDIRQEGNV-TVYENFQSTCSRLGREDDHVMKFLQNDLGTSGHIDESGRVRLTGEFDATRIEASIDEYVDEFVLCSECGLPDTQLEREQGALLLRCEACGA 128          
BLAST of DY257829 vs. ExPASy Swiss-Prot
Match: IF2B_METB6 (Translation initiation factor 2 subunit beta OS=Methanoregula boonei (strain 6A8) GN=eIF2B PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 4.409e-19
Identity = 52/140 (37.14%), Postives = 78/140 (55.71%), Query Frame = 3
Query:  426 YEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKA 845
            YE LL + ++ + E +        R V+   +   EG K T+  NF ++  T+ R  DH+M ++L ELGTSG ++G  R +  G+F       I++ YV++YVIC  C  PDT L K++R+  LRC+ CG  R V   KA
Sbjct:    5 YENLLKKAYSHISEKS----ASSERFVVPEAKAYVEG-KTTILENFAEIADTVRRDKDHLMKYMLGELGTSGKIEGN-RAIFNGKFEISQIRMIIKSYVDDYVICSECGKPDTRLVKDDRVLLLRCDACGGHRPVRKRKA 138          
BLAST of DY257829 vs. ExPASy Swiss-Prot
Match: IF2B_NATPD (Translation initiation factor 2 subunit beta OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=eIF2B PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.852e-17
Identity = 54/131 (41.22%), Postives = 67/131 (51.15%), Query Frame = 3
Query:  426 YEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGS 818
            YEE L R      E  P++ G   R  +  P V +EG   TV+ NF      + R+  HVM FL  ELGTS ++D + RL + G F     E  +  YV  YVIC  C  PDT L KEN    LRCE CG+
Sbjct:    3 YEEQLDRAL----EETPDIEGTAARFSVPDPDVRQEGNA-TVYENFQPTIDRLDREESHVMKFLQNELGTSANIDERGRLRLTGEFRQARVEEAINDYVEGYVICPECGLPDTRLEKENGAEVLRCEACGA 128          
BLAST of DY257829 vs. ExPASy Swiss-Prot
Match: IF2B_METS3 (Translation initiation factor 2 subunit beta OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=eIF2B PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.852e-17
Identity = 50/139 (35.97%), Postives = 79/139 (56.83%), Query Frame = 3
Query:  423 EYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPI 839
            EYE LL R  + L    PE+   +R  + +    ++    +T   NF D+ + ++R P HV+ FLL ELGT+G+L+G  R +++G+F        L  YV +YVIC  C  PDT + +E+R+F L+C  CG+   + P+
Sbjct:    3 EYENLLNRAIDQLP---PEVFEHKRFKIPKAYSDIQGN--RTFIKNFKDVAEDLNRDPQHVLKFLLRELGTAGNLEGS-RAILQGKFTHYLINERLEDYVEKYVICHECNRPDTKIIREDRIFILKCAACGAKAPLKPL 135          
BLAST of DY257829 vs. ExPASy Swiss-Prot
Match: IF2B_METMJ (Translation initiation factor 2 subunit beta OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=eIF2B PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.419e-17
Identity = 54/140 (38.57%), Postives = 77/140 (55.00%), Query Frame = 3
Query:  426 YEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKA 845
            YE+LL + +  + E  P    DR    +   +   EG K TV  NF ++  T+ R+ DH+M  LL ELGT+G ++G  R V  G+F  +    I++ YV++YVIC  C  PDT L K  R+  L+C+ CG  R V   KA
Sbjct:    5 YEDLLKKAYTNITE--PTEFEDR--FTVPTARAFIEG-KTTVLENFAEIASTLRREQDHLMKHLLGELGTAGKVEGT-RAVFSGKFEQEQINTIIKGYVDDYVICSECGKPDTRLVKTERVLTLKCDACGGHRPVRKRKA 138          
BLAST of DY257829 vs. ExPASy Swiss-Prot
Match: IF2B_METST (Translation initiation factor 2 subunit beta OS=Methanosphaera stadtmanae (strain DSM 3091) GN=eif2b PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 7.039e-17
Identity = 47/141 (33.33%), Postives = 85/141 (60.28%), Query Frame = 3
Query:  423 EYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKA 845
            EYE+LL + +    E  P+   + +R  +     + +G + T+  NF D+ +T++R P HV+ +LL ELGTSG+++G  R +++G+F        ++ YV+ +V+C  C  PDT++ +E+R+  L+C  CG+    AP+K+
Sbjct:   10 EYEKLLDQAY----EQLPDKIFEAKRFKVPKGYSVIQGNR-TIIKNFGDVSRTLNRDPQHVLKYLLRELGTSGNVEG-NRAILQGKFTHYVINDRVKEYVDNFVMCHECNRPDTVIIREDRIDMLKCSACGAR---APLKS 141          
The following BLAST results are available for this feature:
BLAST of DY257829 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
IF2B_PYRKO1.790e-2037.59Translation initiation factor 2 subunit beta OS=Py... [more]
IF2B_METTP3.988e-2042.42Translation initiation factor 2 subunit beta OS=Me... [more]
IF2B_METMA8.884e-2038.69Translation initiation factor 2 subunit beta OS=Me... [more]
IF2B_METAC1.979e-1938.69Translation initiation factor 2 subunit beta OS=Me... [more]
IF2B_HALMA1.979e-1938.64Translation initiation factor 2 subunit beta OS=Ha... [more]
IF2B_METB64.409e-1937.14Translation initiation factor 2 subunit beta OS=Me... [more]
IF2B_NATPD1.852e-1741.22Translation initiation factor 2 subunit beta OS=Na... [more]
IF2B_METS31.852e-1735.97Translation initiation factor 2 subunit beta OS=Me... [more]
IF2B_METMJ2.419e-1738.57Translation initiation factor 2 subunit beta OS=Me... [more]
IF2B_METST7.039e-1733.33Translation initiation factor 2 subunit beta OS=Me... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1CH04ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257829 ID=DY257829; Name=DY257829; organism=Citrus clementina; type=EST; length=1326bp
GGAATTCATTTCTTTAGCCGCAGGCCGTCAGCGACGGAAGAGAAGATCTC
AGTTTCGATTCTAGAAACTCGACTATGACGGACGAAAATCAAGTAGATGT
GAAGGACGAGGTGGCAGAACTTGCCCCCTTCGATCCTACTAAAAAGAAGA
AGAAGAAGAAGGTTGTAATACAGGATCCTTCAGATGATTCTGTGGACAAA
CTGGCCGAGATAACTGAAACTTCATCAGTCTCTGAGGGGCTTGAAAGTAC
TTTTACTGGTTTGAAAAAGAAGAAGAAGAAACCAGTAGAAAGCAGTCTAT
TGAACGATGAGATTGGGGATGCAGGAGACGATTTGGATGGTCACGTGGGT
GAGGATGATGAAGCTGATGGAAGTGGTGGTCCACGGCAGCGTTATCCATG
GGAAGGGAGTGATCGCGACTATGAATATGAGGAGCTTCTTGGTAGGGTCT
TTAACATCCTCCGAGAGAATAATCCTGAACTTGCAGGAGATAGGCGTAGA
ACAGTCATGAGACCTCCACAAGTTCTTCGTGAAGGAACAAAGAAAACTGT
TTTTGTCAATTTCATGGATCTCTGCAAGACCATGCATCGGCAGCCAGATC
ATGTCATGACATTTTTGCTTGCTGAACTGGGGACAAGTGGGTCACTGGAC
GGACAGCAAAGACTGGTCGTGAAGGGCCGATTTGCTCCCAAGAATTTTGA
AGGGATACTGCGTCGATATGTCAATGAATATGTCATCTGTCTTGGGTGCA
AAAGTCCTGACACGATACTTTCAAAGGAAAACCGCCTCTTCTTTCTCAGA
TGTGAGAAGTGTGGTTCTGGACGATCAGTTGCTCCCATCAAAGCTGGTTT
CAAGGCACGTGTTGGTCGTAGAAATGCTGGAATGTGATCTTGTGGTCCTG
CTTTTCTCAGCATTTTGAAAAAAAAGAGGTTTGTTTTCATTTTTACCTTA
TGCGTTTTACTACTAATTTGGTTTTGACTAATTGAATTTACCTAGGCCGG
GAAAATATTGGTTATGGATGACCCTTTGATAACTACAATGGATTGATAAA
TCCTTTTTTTCCCTTCCGGGGGGAAGGGCCAATTTTTTGAGCCCTCCCCC
CCAAAAAAAATTTTTTTGGGGACAGAAGGGCCACAAAGGGGGGCAAAAAA
AAAAAAAAAAAAAAGAAGAGGAAAAACCCCGTTTGGGGGCCGCCCCCGCG
CGGCCCCCCCCCACAAACTTAAAAAAACCAAAAAAAAAAAATTAAAGGTG
GGGGGGGGGCCGCCAAAATTTTTGGCGGGGTCCCTCTTGGGTGGGCGGAA
CTTTTTCTCCCCCCCTTCCTCATAAG
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