DY257829

Overview
NameDY257829
Unique NameDY257829
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1326
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257829 vs. ExPASy Swiss-Prot
Match: IF2B_PICTO (Translation initiation factor 2 subunit beta OS=Picrophilus torridus GN=eif2b PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 6.588e-15
Identity = 44/134 (32.84%), Postives = 71/134 (52.99%), Query Frame = 3
Query:  417 DYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGS 818
            +++Y +LL R   +L         +  R  +  P V+ EG K T+  NF+D+ + M+R P+ V+ +L  E G    L GQ RL++  + +    +  +  Y+  YVIC  CKSPDT + K  R + L C+ CG+
Sbjct:    2 NFDYNKLLERASGVLSSKTK----NESRLKIPEPDVIYEG-KSTIIRNFIDITEMMNRDPEDVIKYLTKEFGIGAVLSGQ-RLIINRKVSEDEIQSKMNEYMATYVICYECKSPDTEIQKIGRTYLLVCKACGA 129          
BLAST of DY257829 vs. ExPASy Swiss-Prot
Match: IF2B_SULTO (Translation initiation factor 2 subunit beta OS=Sulfolobus tokodaii GN=eif2b PE=3 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 8.605e-15
Identity = 42/139 (30.22%), Postives = 74/139 (53.24%), Query Frame = 3
Query:  423 EYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPI 839
            EY +LL R+++ L E   +++G        P  ++      T+  NF + C  + R+      F+L EL   G++D   +LV++G+F+  +   I+ R++  YV C  CKS DT+L KE + +++ C  CG+   V P+
Sbjct:    6 EYIKLLDRLYSKLPERVQKVSGQSL-----PNLIILSIGNNTIIKNFSEYCDRIRREDKLCAKFILKELAAPGNVDENGQLVIQGKFSSASINKIMERFIKTYVQCSTCKSLDTVLIKEKKAWYISCLACGAKTPVKPL 139          
BLAST of DY257829 vs. ExPASy Swiss-Prot
Match: IF2B_METJA (Translation initiation factor 2 subunit beta OS=Methanocaldococcus jannaschii GN=eif2b PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.124e-14
Identity = 46/140 (32.86%), Postives = 78/140 (55.71%), Query Frame = 3
Query:  420 YEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPI 839
            Y+Y+ LL R     R   P+    + R  +   ++L EG + T+  NF +L K ++R  +    +LL E G++G+L+G  RL+++ R +P+  +  +  ++ EYVIC  C  PDT + KE R+  L+C  CG+ R +  I
Sbjct:   10 YDYKALLKRA----RSQIPDYVFQKDRFELPEIEILIEGNR-TIIRNFRELAKAVNRDEEFFAKYLLKETGSAGNLEGG-RLILQRRISPELLKSRINDFLREYVICRECGKPDTKIIKEGRVHLLKCMACGAIRPIRMI 143          
BLAST of DY257829 vs. ExPASy Swiss-Prot
Match: IF2B_SULIY (Translation initiation factor 2 subunit beta OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=eIF2B PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.468e-14
Identity = 42/139 (30.22%), Postives = 74/139 (53.24%), Query Frame = 3
Query:  423 EYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPI 839
            EY E+L R+++ L E      G +  T   P  ++      T+  NF + C  + R+    M +LL EL   G++D +  L+++G+F+ +    ++ R++  YV C  CKS DT+L KE + +++ C  CG+   V P+
Sbjct:    6 EYVEMLDRLYSKLPEK-----GRKEGTQALPNLIIFNIGNTTMIRNFAEYCDRIRREDKICMKYLLKELAAPGNVDDKGELIIQGKFSSQVINTLMERFLKAYVECSTCKSLDTVLKKEKKSWYIVCLACGAQTPVKPL 139          
BLAST of DY257829 vs. ExPASy Swiss-Prot
Match: IF2B_SULIN (Translation initiation factor 2 subunit beta OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=eIF2B PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.468e-14
Identity = 42/139 (30.22%), Postives = 74/139 (53.24%), Query Frame = 3
Query:  423 EYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPI 839
            EY E+L R+++ L E      G +  T   P  ++      T+  NF + C  + R+    M +LL EL   G++D +  L+++G+F+ +    ++ R++  YV C  CKS DT+L KE + +++ C  CG+   V P+
Sbjct:    6 EYVEMLDRLYSKLPEK-----GRKEGTQALPNLIIFNIGNTTMIRNFAEYCDRIRREDKICMKYLLKELAAPGNVDDKGELIIQGKFSSQVINTLMERFLKAYVECSTCKSLDTVLKKEKKSWYIVCLACGAQTPVKPL 139          
BLAST of DY257829 vs. ExPASy Swiss-Prot
Match: IF2B_SULIM (Translation initiation factor 2 subunit beta OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=eIF2B PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.468e-14
Identity = 42/139 (30.22%), Postives = 74/139 (53.24%), Query Frame = 3
Query:  423 EYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPI 839
            EY E+L R+++ L E      G +  T   P  ++      T+  NF + C  + R+    M +LL EL   G++D +  L+++G+F+ +    ++ R++  YV C  CKS DT+L KE + +++ C  CG+   V P+
Sbjct:    6 EYVEMLDRLYSKLPEK-----GRKEGTQALPNLIIFNIGNTTMIRNFAEYCDRIRREDKICMKYLLKELAAPGNVDDKGELIIQGKFSSQVINTLMERFLKAYVECSTCKSLDTVLKKEKKSWYIVCLACGAQTPVKPL 139          
BLAST of DY257829 vs. ExPASy Swiss-Prot
Match: IF2B_SULIL (Translation initiation factor 2 subunit beta OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=eIF2B PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.468e-14
Identity = 42/139 (30.22%), Postives = 74/139 (53.24%), Query Frame = 3
Query:  423 EYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPI 839
            EY E+L R+++ L E      G +  T   P  ++      T+  NF + C  + R+    M +LL EL   G++D +  L+++G+F+ +    ++ R++  YV C  CKS DT+L KE + +++ C  CG+   V P+
Sbjct:    6 EYVEMLDRLYSKLPEK-----GRKEGTQALPNLIIFNIGNTTMIRNFAEYCDRIRREDKICMKYLLKELAAPGNVDDKGELIIQGKFSSQVINTLMERFLKAYVECSTCKSLDTVLKKEKKSWYIVCLACGAQTPVKPL 139          
BLAST of DY257829 vs. ExPASy Swiss-Prot
Match: IF2B_SULIK (Translation initiation factor 2 subunit beta OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=eIF2B PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.468e-14
Identity = 42/139 (30.22%), Postives = 74/139 (53.24%), Query Frame = 3
Query:  423 EYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPI 839
            EY E+L R+++ L E      G +  T   P  ++      T+  NF + C  + R+    M +LL EL   G++D +  L+++G+F+ +    ++ R++  YV C  CKS DT+L KE + +++ C  CG+   V P+
Sbjct:    6 EYVEMLDRLYSKLPEK-----GRKEGTQALPNLIIFNIGNTTMIRNFAEYCDRIRREDKICMKYLLKELAAPGNVDDKGELIIQGKFSSQVINTLMERFLKAYVECSTCKSLDTVLKKEKKSWYIVCLACGAQTPVKPL 139          
BLAST of DY257829 vs. ExPASy Swiss-Prot
Match: IF2B_SULIA (Translation initiation factor 2 subunit beta OS=Sulfolobus islandicus (strain M.16.27) GN=eIF2B PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.468e-14
Identity = 42/139 (30.22%), Postives = 74/139 (53.24%), Query Frame = 3
Query:  423 EYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPI 839
            EY E+L R+++ L E      G +  T   P  ++      T+  NF + C  + R+    M +LL EL   G++D +  L+++G+F+ +    ++ R++  YV C  CKS DT+L KE + +++ C  CG+   V P+
Sbjct:    6 EYVEMLDRLYSKLPEK-----GRKEGTQALPNLIIFNIGNTTMIRNFAEYCDRIRREDKICMKYLLKELAAPGNVDDKGELIIQGKFSSQVINTLMERFLKAYVECSTCKSLDTVLKKEKKSWYIVCLACGAQTPVKPL 139          
BLAST of DY257829 vs. ExPASy Swiss-Prot
Match: IF2B_HALSA (Translation initiation factor 2 subunit beta OS=Halobacterium salinarium GN=eif2b PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.468e-14
Identity = 48/136 (35.29%), Postives = 64/136 (47.06%), Query Frame = 3
Query:  423 EYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSV 830
            +YEE L R      +  P++ G   R  +  P V +EG   TV+ NF      + R  DHV+ FL  E+GTS S+D   R  + G F  +     L  YV  YV C  C  PDT L  +     L CE CG+  +V
Sbjct:    2 DYEEQLDRAM----DEKPDVTGSETRFEVPDPNVRKEGNV-TVYENFQATLDALSRTQDHVLKFLQNEVGTSASIDESGRARLTGEFGQRRVSDTLDAYVETYVTCPECGLPDTNLETDGDTIQLHCEACGARSTV 132          
The following BLAST results are available for this feature:
BLAST of DY257829 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
IF2B_PICTO6.588e-1532.84Translation initiation factor 2 subunit beta OS=Pi... [more]
IF2B_SULTO8.605e-1530.22Translation initiation factor 2 subunit beta OS=Su... [more]
IF2B_METJA1.124e-1432.86Translation initiation factor 2 subunit beta OS=Me... [more]
IF2B_SULIY1.468e-1430.22Translation initiation factor 2 subunit beta OS=Su... [more]
IF2B_SULIN1.468e-1430.22Translation initiation factor 2 subunit beta OS=Su... [more]
IF2B_SULIM1.468e-1430.22Translation initiation factor 2 subunit beta OS=Su... [more]
IF2B_SULIL1.468e-1430.22Translation initiation factor 2 subunit beta OS=Su... [more]
IF2B_SULIK1.468e-1430.22Translation initiation factor 2 subunit beta OS=Su... [more]
IF2B_SULIA1.468e-1430.22Translation initiation factor 2 subunit beta OS=Su... [more]
IF2B_HALSA1.468e-1435.29Translation initiation factor 2 subunit beta OS=Ha... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1CH04ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257829 ID=DY257829; Name=DY257829; organism=Citrus clementina; type=EST; length=1326bp
GGAATTCATTTCTTTAGCCGCAGGCCGTCAGCGACGGAAGAGAAGATCTC
AGTTTCGATTCTAGAAACTCGACTATGACGGACGAAAATCAAGTAGATGT
GAAGGACGAGGTGGCAGAACTTGCCCCCTTCGATCCTACTAAAAAGAAGA
AGAAGAAGAAGGTTGTAATACAGGATCCTTCAGATGATTCTGTGGACAAA
CTGGCCGAGATAACTGAAACTTCATCAGTCTCTGAGGGGCTTGAAAGTAC
TTTTACTGGTTTGAAAAAGAAGAAGAAGAAACCAGTAGAAAGCAGTCTAT
TGAACGATGAGATTGGGGATGCAGGAGACGATTTGGATGGTCACGTGGGT
GAGGATGATGAAGCTGATGGAAGTGGTGGTCCACGGCAGCGTTATCCATG
GGAAGGGAGTGATCGCGACTATGAATATGAGGAGCTTCTTGGTAGGGTCT
TTAACATCCTCCGAGAGAATAATCCTGAACTTGCAGGAGATAGGCGTAGA
ACAGTCATGAGACCTCCACAAGTTCTTCGTGAAGGAACAAAGAAAACTGT
TTTTGTCAATTTCATGGATCTCTGCAAGACCATGCATCGGCAGCCAGATC
ATGTCATGACATTTTTGCTTGCTGAACTGGGGACAAGTGGGTCACTGGAC
GGACAGCAAAGACTGGTCGTGAAGGGCCGATTTGCTCCCAAGAATTTTGA
AGGGATACTGCGTCGATATGTCAATGAATATGTCATCTGTCTTGGGTGCA
AAAGTCCTGACACGATACTTTCAAAGGAAAACCGCCTCTTCTTTCTCAGA
TGTGAGAAGTGTGGTTCTGGACGATCAGTTGCTCCCATCAAAGCTGGTTT
CAAGGCACGTGTTGGTCGTAGAAATGCTGGAATGTGATCTTGTGGTCCTG
CTTTTCTCAGCATTTTGAAAAAAAAGAGGTTTGTTTTCATTTTTACCTTA
TGCGTTTTACTACTAATTTGGTTTTGACTAATTGAATTTACCTAGGCCGG
GAAAATATTGGTTATGGATGACCCTTTGATAACTACAATGGATTGATAAA
TCCTTTTTTTCCCTTCCGGGGGGAAGGGCCAATTTTTTGAGCCCTCCCCC
CCAAAAAAAATTTTTTTGGGGACAGAAGGGCCACAAAGGGGGGCAAAAAA
AAAAAAAAAAAAAAGAAGAGGAAAAACCCCGTTTGGGGGCCGCCCCCGCG
CGGCCCCCCCCCACAAACTTAAAAAAACCAAAAAAAAAAAATTAAAGGTG
GGGGGGGGGCCGCCAAAATTTTTGGCGGGGTCCCTCTTGGGTGGGCGGAA
CTTTTTCTCCCCCCCTTCCTCATAAG
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