DY257829

Overview
NameDY257829
Unique NameDY257829
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1326
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257829 vs. ExPASy Swiss-Prot
Match: IF2B_HALS3 (Translation initiation factor 2 subunit beta OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=eIF2B PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.468e-14
Identity = 48/136 (35.29%), Postives = 64/136 (47.06%), Query Frame = 3
Query:  423 EYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSV 830
            +YEE L R      +  P++ G   R  +  P V +EG   TV+ NF      + R  DHV+ FL  E+GTS S+D   R  + G F  +     L  YV  YV C  C  PDT L  +     L CE CG+  +V
Sbjct:    2 DYEEQLDRAM----DEKPDVTGSETRFEVPDPNVRKEGNV-TVYENFQATLDALSRTQDHVLKFLQNEVGTSASIDESGRARLTGEFGQRRVSDTLDAYVETYVTCPECGLPDTNLETDGDTIQLHCEACGARSTV 132          
BLAST of DY257829 vs. ExPASy Swiss-Prot
Match: IF2B_THEAC (Translation initiation factor 2 subunit beta OS=Thermoplasma acidophilum GN=eif2b PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 5.577e-14
Identity = 42/140 (30.00%), Postives = 75/140 (53.57%), Query Frame = 3
Query:  423 EYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIK 842
            +YE+LL +  N+L  +   +     R  +  P+++REG K T+  NF D+   ++R P+H++ FL  E GT+   +G+ RL++  +   +     +  Y+N YV C  C S DT + K  R+  L C+ CG+   +  ++
Sbjct:    4 DYEKLLEKAKNVLSSSTKNID----RLKIPDPEIIREG-KATIIRNFQDIVDIINRDPEHIIKFLTREFGTNIVQNGR-RLIINRKLTLEELLDKMNEYINTYVRCYECGSLDTEIQKSGRISLLVCKACGAQHPIHSVR 137          
BLAST of DY257829 vs. ExPASy Swiss-Prot
Match: IF2B_THEVO (Translation initiation factor 2 subunit beta OS=Thermoplasma volcanium GN=eif2b PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 1.243e-13
Identity = 46/147 (31.29%), Postives = 78/147 (53.06%), Query Frame = 3
Query:  426 YEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKAGFKARVG 866
            Y++LL +  ++L  +   +     R  +  P+++REG K T+  NF D+   ++R PD V+ FL  ELGT+   +G+ RL++  +   +  +  +  Y+N YV C  C S DT + K  R+  L C+ CG+   +  +K  FK   G
Sbjct:    5 YDKLLEKAKDVLSSSTKNID----RLKIPEPEIIREG-KATIIRNFQDIIDIINRDPDQVIKFLTRELGTNIVQNGR-RLIINKKVTLEELQEKMNEYINTYVRCYECGSLDTEIQKSGRVSLLVCKACGAQHPIHTVKE-FKEEEG 144          
BLAST of DY257829 vs. ExPASy Swiss-Prot
Match: IF2B_METS5 (Translation initiation factor 2 subunit beta OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=eif2b PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 6.166e-13
Identity = 43/144 (29.86%), Postives = 76/144 (52.78%), Query Frame = 3
Query:  408 SDRDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPI 839
            S+RD  Y  LL R++  L +   +LA +   T   P   +      T+  NF + C  + R+    M +LL EL  +GS+    +L+++G+F+       + R++  YV C  CKS DT+L K+ ++++++C  CG+   V P+
Sbjct:    2 SERDKLYHVLLDRLYAKLPKK--DLASE---TQTLPTLSIINVGNTTIIRNFSEYCDRIRREDKICMRYLLKELAAAGSISENGQLMIQGKFSNAIVNTFMDRFLKTYVQCSTCKSLDTVLVKDKKIWYIQCLACGAKNPVKPL 140          
BLAST of DY257829 vs. ExPASy Swiss-Prot
Match: IF2B_PYRAE (Translation initiation factor 2 subunit beta OS=Pyrobaculum aerophilum GN=eif2b PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.794e-12
Identity = 44/141 (31.21%), Postives = 67/141 (47.52%), Query Frame = 3
Query:  417 DYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPI 839
            D EY  LL R + ++       A   +R    P   +    +KT+  NF  + K ++R    +  F   EL   G+L+G     + G  +PK  E +  R++  YV+C  C S DT L KE R+F +RC  CG+   V P+
Sbjct:    2 DSEYAALLERAYKLV-------APKAQRRAEIPKIEVENMPRKTIIPNFGQIAKRLNRDVYFMAKFFQKELAVPGTLEGDV-FTLHGEKSPKVVEAVYDRFIRYYVVCPVCNSIDTELRKEGRIFIMRCLACGASTPVRPL 134          
BLAST of DY257829 vs. ExPASy Swiss-Prot
Match: IF2B_STAMF (Translation initiation factor 2 subunit beta OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=eif2b PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 5.220e-12
Identity = 41/135 (30.37%), Postives = 73/135 (54.07%), Query Frame = 3
Query:  414 RDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGS 818
            RDY++EELL R ++ L    P     +    +   +V+  G K T+ +NF  +   ++R P  +  + + ELG    ++   +L+++GRF+      ++  +V +YVIC  C S  T L K+ ++F L+CE CG+
Sbjct:    6 RDYKFEELLERAYSKL----PARTVSKETFEVPRAEVMFVGGK-TLILNFKQITDVINRDPKILQRYFVKELGVPAYMNESGQLILQGRFSSHVINRLIDLFVKKYVICPTCGSRFTKLIKKGKVFILKCEACGA 135          
BLAST of DY257829 vs. ExPASy Swiss-Prot
Match: IF2B_SULAC (Translation initiation factor 2 subunit beta OS=Sulfolobus acidocaldarius GN=eif2b PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 6.818e-12
Identity = 39/134 (29.10%), Postives = 73/134 (54.48%), Query Frame = 3
Query:  417 DYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGS 818
            D  YE+LL R+++ L +   + +G +      P  ++ +    T+  NF + C  + R+    M +LL EL   GSL    +LV++G+F+ +    ++ R++  YV C  C+S DTIL ++ +++ + C  CG+
Sbjct:    6 DKNYEQLLDRLYDRLPDK-AQKSGQQNL----PNLIVLQVGNTTIIRNFSEYCDRIRREDKLCMRYLLKELAAPGSLGENGQLVIQGKFSSQVVTMLMERFLKMYVQCSTCRSFDTILKRDKKVWIISCLACGA 134          
BLAST of DY257829 vs. ExPASy Swiss-Prot
Match: IF2B_THENV (Translation initiation factor 2 subunit beta OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=eIF2B PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.519e-11
Identity = 42/141 (29.79%), Postives = 68/141 (48.23%), Query Frame = 3
Query:  417 DYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPI 839
            D EY  LL R + ++       A   +R    P   ++   +KTV  NF  + K ++R    +  F   EL   G+++G     + G  +PK  E +  R++  YV+C  C S DT L +E R++ +RC  CG+   V P+
Sbjct:    2 DEEYIALLDRAYKLV-------APKAQRRAEIPKIEVQNMPRKTVIPNFGQIAKRLNRDIYFMAKFFQRELAVPGTVEGDV-FTLHGEKSPKVVEAVYERFIRYYVVCPVCNSIDTELRREGRIYVMRCLACGASTPVKPL 134          
BLAST of DY257829 vs. ExPASy Swiss-Prot
Match: IF2B_PYRIL (Translation initiation factor 2 subunit beta OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=eIF2B PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.591e-11
Identity = 40/141 (28.37%), Postives = 68/141 (48.23%), Query Frame = 3
Query:  417 DYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPI 839
            D EY  LL R + ++       A   +R    P   ++   +KT+  NF  + K ++R    +  F   EL   G+++G     + G  +PK  E +  R++  YV+C  C S DT L +E R++ ++C  CG+   V P+
Sbjct:    2 DEEYLALLERAYKLV-------APKAQRRAEIPKIEVQNMPRKTIIPNFGQIAKRLNRDVYFMAKFFQKELAVPGTIEGDV-FTLHGEKSPKVVEAVYERFIRYYVVCPVCNSIDTELKREGRIYVMKCLACGASTPVRPL 134          
BLAST of DY257829 vs. ExPASy Swiss-Prot
Match: IF2B_PYRAR (Translation initiation factor 2 subunit beta OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=eIF2B PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.591e-11
Identity = 44/141 (31.21%), Postives = 69/141 (48.94%), Query Frame = 3
Query:  417 DYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPI 839
            D EY  LL R + ++          +RRT +   QV     +KT+  NF  + K ++R    +  F   EL   G+++G     + G  +PK  E +  R++  YV+C  C S DT L KE R+F ++C  CG+   V P+
Sbjct:    2 DKEYLALLERAYTLVAPKA------QRRTEIPKIQV-ENMPRKTIIPNFGAIAKRLNRDIYFMAKFFQKELAVPGTVEGDV-FTLHGEKSPKVVEAVYERFIRYYVVCPVCNSIDTELRKEGRVFVMKCLACGASTPVKPL 134          
The following BLAST results are available for this feature:
BLAST of DY257829 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
IF2B_HALS31.468e-1435.29Translation initiation factor 2 subunit beta OS=Ha... [more]
IF2B_THEAC5.577e-1430.00Translation initiation factor 2 subunit beta OS=Th... [more]
IF2B_THEVO1.243e-1331.29Translation initiation factor 2 subunit beta OS=Th... [more]
IF2B_METS56.166e-1329.86Translation initiation factor 2 subunit beta OS=Me... [more]
IF2B_PYRAE1.794e-1231.21Translation initiation factor 2 subunit beta OS=Py... [more]
IF2B_STAMF5.220e-1230.37Translation initiation factor 2 subunit beta OS=St... [more]
IF2B_SULAC6.818e-1229.10Translation initiation factor 2 subunit beta OS=Su... [more]
IF2B_THENV1.519e-1129.79Translation initiation factor 2 subunit beta OS=Th... [more]
IF2B_PYRIL2.591e-1128.37Translation initiation factor 2 subunit beta OS=Py... [more]
IF2B_PYRAR2.591e-1131.21Translation initiation factor 2 subunit beta OS=Py... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1CH04ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257829 ID=DY257829; Name=DY257829; organism=Citrus clementina; type=EST; length=1326bp
GGAATTCATTTCTTTAGCCGCAGGCCGTCAGCGACGGAAGAGAAGATCTC
AGTTTCGATTCTAGAAACTCGACTATGACGGACGAAAATCAAGTAGATGT
GAAGGACGAGGTGGCAGAACTTGCCCCCTTCGATCCTACTAAAAAGAAGA
AGAAGAAGAAGGTTGTAATACAGGATCCTTCAGATGATTCTGTGGACAAA
CTGGCCGAGATAACTGAAACTTCATCAGTCTCTGAGGGGCTTGAAAGTAC
TTTTACTGGTTTGAAAAAGAAGAAGAAGAAACCAGTAGAAAGCAGTCTAT
TGAACGATGAGATTGGGGATGCAGGAGACGATTTGGATGGTCACGTGGGT
GAGGATGATGAAGCTGATGGAAGTGGTGGTCCACGGCAGCGTTATCCATG
GGAAGGGAGTGATCGCGACTATGAATATGAGGAGCTTCTTGGTAGGGTCT
TTAACATCCTCCGAGAGAATAATCCTGAACTTGCAGGAGATAGGCGTAGA
ACAGTCATGAGACCTCCACAAGTTCTTCGTGAAGGAACAAAGAAAACTGT
TTTTGTCAATTTCATGGATCTCTGCAAGACCATGCATCGGCAGCCAGATC
ATGTCATGACATTTTTGCTTGCTGAACTGGGGACAAGTGGGTCACTGGAC
GGACAGCAAAGACTGGTCGTGAAGGGCCGATTTGCTCCCAAGAATTTTGA
AGGGATACTGCGTCGATATGTCAATGAATATGTCATCTGTCTTGGGTGCA
AAAGTCCTGACACGATACTTTCAAAGGAAAACCGCCTCTTCTTTCTCAGA
TGTGAGAAGTGTGGTTCTGGACGATCAGTTGCTCCCATCAAAGCTGGTTT
CAAGGCACGTGTTGGTCGTAGAAATGCTGGAATGTGATCTTGTGGTCCTG
CTTTTCTCAGCATTTTGAAAAAAAAGAGGTTTGTTTTCATTTTTACCTTA
TGCGTTTTACTACTAATTTGGTTTTGACTAATTGAATTTACCTAGGCCGG
GAAAATATTGGTTATGGATGACCCTTTGATAACTACAATGGATTGATAAA
TCCTTTTTTTCCCTTCCGGGGGGAAGGGCCAATTTTTTGAGCCCTCCCCC
CCAAAAAAAATTTTTTTGGGGACAGAAGGGCCACAAAGGGGGGCAAAAAA
AAAAAAAAAAAAAAGAAGAGGAAAAACCCCGTTTGGGGGCCGCCCCCGCG
CGGCCCCCCCCCACAAACTTAAAAAAACCAAAAAAAAAAAATTAAAGGTG
GGGGGGGGGCCGCCAAAATTTTTGGCGGGGTCCCTCTTGGGTGGGCGGAA
CTTTTTCTCCCCCCCTTCCTCATAAG
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