DY257840

Overview
NameDY257840
Unique NameDY257840
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1311
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY257840_ssr757 microsatellite DY257840_ssr757:757..766. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY257840 vs. ExPASy Swiss-Prot
Match: COPB2_DICDI (Coatomer subunit beta' OS=Dictyostelium discoideum GN=copb2 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.035e-12
Identity = 56/183 (30.60%), Postives = 91/183 (49.73%), Query Frame = 2 
Query:  323 NSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQIQSKQSSGMLHYLSGGAWDPHDVNAVA-ATCESSVQFWDLRSMVKTNSIE--HAHVRNVDYDTK-KKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST 859
            N   +E+I + +AH   I C++   +  +  L S D+  I LW  +    N Q+      G  HY+   AW+P D N  A A+ + +V+ W + S     ++E     + +V+Y +  +K  L++ AD+  + +WD +  K  +Q L GH++    VC +PE    ILS   D TV LW  ST
Sbjct:   86 NYNTMEKIKSFEAHADYIRCIIVHPTLPYI-LSSSDDMFIKLWDYEKGWSNTQV----FEGHSHYVMSIAWNPKDTNQFATASLDKTVKVWSINSPHPHFTLEGHEKGINSVEYFSGGEKPYLISGADDKLVKIWDYQS-KTCVQTLEGHSNNVSVVCYHPELP-LILSGSEDGTVKLWHSST 261
The following BLAST results are available for this feature:
BLAST of DY257840 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
COPB2_DICDI1.035e-1230.60Coatomer subunit beta' OS=Dictyostelium discoideum... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAB1DB06ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257840 ID=DY257840; Name=DY257840; organism=Citrus clementina; type=EST; length=1311bp
GGCAACAATGCAAGGAGGATCTTCAGGCATAGGCTATGGTCTCAAGTATC
AAGCTAGATGCATATCAGATGTCAAAGCAGACACGGATCACACCAGCTTC
CTCACTGGAACTCTCAGTCTCAAAGAAGAGAACGAGGTGCATTTGCTTCG
GCTTTCATCCGGTGGAACCGAGCTCATTTGCGAGGGTTTGTTCTCGCATC
CTAACGAAATATGGGACCTCAGTTCGTGTCCGTTCGATCAACGGATTTTC
TCCACTGTTTTTTCCACTGGTGAGTCATATGGGGCAGCAATATGGCAAAT
TCCAGAGTTGTATGGCCAGCTAAATTCACCTCAGTTGGAACGTATCGCCG
CTCTTGATGCACATGTTGGTAAGATTAATTGCGTTCTTTGGTGGTCATCT
GGAAGACATGATAAATTGGTCAGCATAGACGAGGAAAATATTTTCTTGTG
GAGCTTAGATTGTTCAAACAAGAATGCCCAGATACAATCTAAACAGTCAT
CTGGTATGCTGCATTATTTATCTGGTGGAGCATGGGATCCGCATGATGTA
AATGCTGTCGCAGCGACTTGTGAATCATCAGTCCAGTTTTGGGATCTCAG
ATCAATGGTGAAGACAAATTCAATCGAGCATGCGCACGTCCGCAATGTGG
ACTATGACACCAAGAAAAAGCATTTACTTGTTACTGCAGCAGATGAATCT
GGGATACATTTATGGGATCTTAGAATGCTGAAGGCACCTATCCAGGAACT
CCCTGGACACACACACTGGACTTGGGCTGTCTGCTGTAACCCTGAGTATG
ATGGATTTATTTTGAGCGCTGGTACGGACTCGACTGTAAATTTATGGTTG
GTTTCCACGTCTAACCATGATGAGCTTCCATCTGAAAGCTTAGTTGAATC
ACAAATCAGCGCGCTAATCATTACTCAATTCATATAGTGATTATGAAGAC
AGTGTGTATGGCCTTTGCTGGAAGTTCCCCTGAGGCTTGGGATTTTTGCT
TCCCTGGCCCTAAGATGGGAGGGGAAATTGGTCAAGTCGGGGGAAGCCCT
TTCCCTCTCGCGAAAATGAAGATCCAACCTAAGTTCGCGACCGCCCCGCA
TTGTTCCTTAAATTTCGGGGAAAATTTTTTTACCCCCTCGGGTTCTTTTC
CCTTTCCCAAAAATCGGAAAACAAGAGGGAAAACTTTCCCCCACCCCCCC
GGGGTTTGAATAATTTTTAAATTTTAAAGGGGAAAAAAAAAAAAATGTGG
GGGAGTTTTGGGGGGAGAACCAGGAGGAAAAAATTTTTTTTTTTTTTTTT
CCCTTGCGGGG
back to top