DY257846

Overview
NameDY257846
Unique NameDY257846
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1128
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY257846_ssr550 microsatellite DY257846_ssr550:550..559. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY257846 vs. ExPASy Swiss-Prot
Match: ATPO_SORAR (ATP synthase subunit O, mitochondrial OS=Sorex araneus GN=ATP5O PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 4.928e-21
Identity = 62/199 (31.16%), Postives = 99/199 (49.75%), Query Frame = 2
Query:  131 KGFSTSSVQKEQK-VKVPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVKAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPSILGGLVVEFGQKVFDMSIKSRARQMERFLRE 724
            + FSTS  +   K V+ P+ ++G  G YA+ALY AA K N L++VE E+L + +  K+            V    +VK+I ++  + K S +T + + +LAENGRL N   I   F  +   H+GEV  TVT+                                DPSI+GG++V  G+K  DMS +++ +++ + +RE
Sbjct:   14 RSFSTSVARPFAKLVRPPIQIYGVEGRYATALYSAASKQNKLDQVEKELLRVAQLLKEPKLAASILNP-HVKRAIKVKSIGDLTAREKLSPITTNLINLLAENGRLNNTPGIISAFSTMMSVHRGEVPCTVTTASALPEATLSELKTVLQSFLSKNQVLKLEVKTDPSIMGGMIVRIGEKYVDMSARTKIQKLSKAMRE 211          
BLAST of DY257846 vs. ExPASy Swiss-Prot
Match: ATPO_CALJA (ATP synthase subunit O, mitochondrial OS=Callithrix jacchus GN=ATP5O PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 4.928e-21
Identity = 63/199 (31.66%), Postives = 100/199 (50.25%), Query Frame = 2
Query:  137 FSTSSVQKEQK-VKVPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVKAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPSILGGLVVEFGQKVFDMSIKSRARQMERFLREPI 730
            F TS V+   K V+ P+ ++G  G YA+ALY AA K   LE+VE E+L + +  K+            V    +VK++++I  + +FS +T + + +LAENGRL N   +   F  +   H+GEV  TVT+                                DPSI+GG++V  G+K  DMS K++ +++ + +RE I
Sbjct:   16 FGTSVVRPFAKLVRPPVQVYGVEGRYATALYSAASKQKKLEQVEKELLRVAQILKEPKVAASVLNPY-VKHSIKVKSLSDIIAKERFSPLTTNLINLLAENGRLSNTQGVVSAFSTMMSVHRGEVPCTVTTASPLEEATLSELKTVLKSFLSQGQILKLEVKTDPSIMGGMIVRIGEKYVDMSAKTKIQKLSKAMREVI 213          
BLAST of DY257846 vs. ExPASy Swiss-Prot
Match: ATPO_DROME (ATP synthase subunit O, mitochondrial OS=Drosophila melanogaster GN=Oscp PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 1.484e-17
Identity = 54/185 (29.19%), Postives = 86/185 (46.49%), Query Frame = 2
Query:  146 SSVQKEQKVKVPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVKAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPSILGGLVVEFGQKVFDMSIKSRAR 700
            SS   +  VK P+ +FG  G YA+ALY AA K + L++VE ++  L    +      ++     +  +    A+ E   + +F+  T + L +LA+NGRL+ LDT+   +  +  AH+GEV   V +                                DPSI+GGL+V  G K  DMSI ++ +
Sbjct:   15 SSAAAQATVKPPVQVFGLEGRYATALYSAASKLSQLDQVEKDLTALQATIRSDKKLREYVTSPIINKKVMATALKEASEKLRFAPATVNLLGLLADNGRLKKLDTVINAYKTIMAAHRGEVVCEVVTAKPLDASQSKQLEGALKSFLKGNESLKITSRVDPSIIGGLIVSIGDKYVDMSIATKVK 199          
BLAST of DY257846 vs. ExPASy Swiss-Prot
Match: ATPO_NEUCR (ATP synthase subunit 5, mitochondrial OS=Neurospora crassa GN=atp-5 PE=3 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 1.640e-16
Identity = 61/191 (31.94%), Postives = 89/191 (46.60%), Query Frame = 2
Query:  167 KVKVPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVKAINEICTQAKFSDVT-KHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSV--IXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPSILGGLVVEFGQKVFDMSIKSRARQMERFLREPI 730
            KVK P+ LFG  G YA+ALY AAVKT+ALE     I  L     K        +  ++    +   + E+      S+ T K+FL  LAEN RL  L ++  +F EL  A +GEV++ VTS   +                              +  I+GGLVVE G++  D+S+ S+  +M + L E +
Sbjct:   30 KVKPPVTLFGLDGTYATALYTAAVKTSALEPTAKAISSLGNLLAKDPKLASILETPTLSPADKSAIVAELQKSVGVSNETVKNFLATLAENNRLGLLPSVVAKFSELMSAARGEVEMVVTSAQPLDNKTLNRLESAVAKSPYVGSGKKLKVTNKVNADIIGGLVVEIGERTIDLSVSSKIAKMNKLLSEAL 220          
BLAST of DY257846 vs. ExPASy Swiss-Prot
Match: ATPO_SCHPO (ATP synthase subunit 5, mitochondrial OS=Schizosaccharomyces pombe GN=atp5 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 2.798e-16
Identity = 54/184 (29.35%), Postives = 85/184 (46.20%), Query Frame = 2
Query:  179 PLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVKAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPSILGGLVVEFGQKVFDMSIKSRARQMERFLREPI 730
            P+ L+G  G+YAS+LY AAVK + L+ VE  +  L    ++   + Q+     +  E +   ++ +        + K+F  VL +N RL  L  I K+F  L  A +GE++V +TS                                 PSI+GGL+VE G  + D+S+ SR   + + L EPI
Sbjct:   33 PVQLYGLDGSYASSLYTAAVKESKLDNVEKALNKLSGVLQQRPEFEQYISSPWLTREDKKILVSSLTQMTGNEPLLKNFYNVLLDNHRLYLLTRIQKQFSTLMRAKRGEIEVKITSATPLDSKILSRLESRIAKSKYGKGKLLVSNKVTPSIIGGLIVEIGDNILDVSVGSRLNNLNKLLSEPI 216          
BLAST of DY257846 vs. ExPASy Swiss-Prot
Match: ATPO_KLULA (ATP synthase subunit 5, mitochondrial OS=Kluyveromyces lactis GN=ATP5 PE=3 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 5.277e-15
Identity = 57/189 (30.16%), Postives = 87/189 (46.03%), Query Frame = 2
Query:  170 VKVPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVKAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSV--IXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPSILGGLVVEFGQKVFDMSIKSRARQMERFLREPI 730
            VK P+ LFG  G YA+AL+ AA KT ++E   S +  L E   K        ++ ++ AE R   ++ +  +       ++ L VLAEN RL  L+ +  +F +LT A+ G V+ TVT+   +                               P I GGL+VE   +  D+SI SR  ++ + LRE I
Sbjct:   18 VKPPVQLFGLDGTYATALFTAASKTTSVEAAASSLNALKETVAKDTKLTSILENPALSAEDRNIVVDTLSKKINLDQSVQNLLKVLAENNRLSLLEHVTSQFSKLTDAYHGLVQATVTTAQPLDSKLFKRVEKALAASSLVGKGKSLKLENVVKPEIQGGLIVEVSDRTVDLSIASRINKLNQVLREAI 206          
BLAST of DY257846 vs. ExPASy Swiss-Prot
Match: ATPO_ASHGO (ATP synthase subunit 5, mitochondrial OS=Ashbya gossypii GN=ATP5 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.005e-14
Identity = 57/190 (30.00%), Postives = 84/190 (44.21%), Query Frame = 2
Query:  170 VKVPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVKAINEICTQAKFSDVT-KHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSV--IXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPSILGGLVVEFGQKVFDMSIKSRARQMERFLREPI 730
            VK P+ LFG  G YASAL+ AA KT ++E     +  L +   K         + ++PA  R   +  +  +    D   ++ + VLAEN RL  L  +A  F +LT AH G V+ TVT+   +                               P I GGL+VE   +  D+SI SR  ++ + L+E I
Sbjct:   18 VKPPIQLFGLEGTYASALFTAASKTTSIESAGKALASLSKTIAKDAKLGAILANPALPAGDRTVVVQTLAQKTPGMDAAVQNLMQVLAENNRLNLLQGVAGEFTKLTDAHNGLVQATVTTAQPLEGKLFRRVEKALAQSSFIGAGKTLKLENVVKPEIQGGLIVEVADRTVDLSIASRISKLNQVLKESI 207          
BLAST of DY257846 vs. ExPASy Swiss-Prot
Match: ATPO_CANGA (ATP synthase subunit 5, mitochondrial OS=Candida glabrata GN=ATP5 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.201e-12
Identity = 51/190 (26.84%), Postives = 85/190 (44.74%), Query Frame = 2
Query:  170 VKVPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVKAINEIC-TQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSV--IXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPSILGGLVVEFGQKVFDMSIKSRARQMERFLREPI 730
            VK P+ LFG  G YASAL+ AA K  ++E   S ++ L    K+        ++ ++  + R   ++ +  + A       + L VLAEN +L   D I+ +F  L  AH G ++ +VT+   +                               P I GGL+VE G +  D+S+ S+ +++ + L E I
Sbjct:   18 VKPPVKLFGVEGTYASALFTAASKETSVESASSSLVKLSSLIKEDAKLKHIMENPALSTKDRAVVVDSLVKSSANLDKPVVNLLKVLAENNKLGLFDKISSQFSILNDAHNGLIRGSVTTAQPLDSKNFKRLEKALQQSSLVGQQKTLKLDNVVKPDIKGGLIVEVGDQTIDLSVSSKIQKLNKVLEETI 207          
BLAST of DY257846 vs. ExPASy Swiss-Prot
Match: ATPD_PELUB (ATP synthase subunit delta OS=Pelagibacter ubique GN=atpH PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 4.623e-11
Identity = 46/175 (26.29%), Postives = 79/175 (45.14%), Query Frame = 2
Query:  200 SGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVKAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPSILGGLVVEFGQKVFDMSIKSRARQMERFLRE 724
            +G Y+ ALY  AV+ N L ++E     ++     ++ +    KD +   E ++ A+++I  Q K +++   FL  L    R   +D I K FVE     +GE+K  +TS                                D S++GGL+V+ G  + D SIK++ +Q+E  + E
Sbjct:   12 AGRYSLALYELAVEANNLNEIEVHSASIINLITSSEDFKSLIKDPTNNKEDQLNALSKISEQYKLNELLTKFLSFLISKRRFFYVDKILKSFVETCSVKRGELKAELTSA--KDLTENEINNIKEELTKNFSSKIKLNYKHDASLIGGLIVQVGSTMVDTSIKNKLQQIENRMIE 184          
BLAST of DY257846 vs. ExPASy Swiss-Prot
Match: ATPD_SPHWW (ATP synthase subunit delta OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=atpH PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 6.038e-11
Identity = 48/169 (28.40%), Postives = 73/169 (43.20%), Query Frame = 2
Query:  200 SGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVKAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPSILGGLVVEFGQKVFDMSIKSRARQM 706
            SG YA+AL+  A    A++ V + +  L  A  ++D + + T    V  +  +KA+           +T  FL VLA+N RL  L  + + F  L+  H+GE    VTS                                DPSILGGL+V+ G +  D SI+S+   +
Sbjct:   12 SGRYATALFGLARDEKAIDAVSASLQSLKAALTESDDFRRLTTSPLVSRDEAMKAVAATAASLGIDPLTTKFLGVLAQNRRLGQLGAVIRSFGTLSARHRGETTAEVTSA--HPLTATQVKALKAKLKTQLDRDVAVDLTVDPSILGGLIVKIGSRQIDGSIRSKLNSL 178          
The following BLAST results are available for this feature:
BLAST of DY257846 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
ATPO_SORAR4.928e-2131.16ATP synthase subunit O, mitochondrial OS=Sorex ara... [more]
ATPO_CALJA4.928e-2131.66ATP synthase subunit O, mitochondrial OS=Callithri... [more]
ATPO_DROME1.484e-1729.19ATP synthase subunit O, mitochondrial OS=Drosophil... [more]
ATPO_NEUCR1.640e-1631.94ATP synthase subunit 5, mitochondrial OS=Neurospor... [more]
ATPO_SCHPO2.798e-1629.35ATP synthase subunit 5, mitochondrial OS=Schizosac... [more]
ATPO_KLULA5.277e-1530.16ATP synthase subunit 5, mitochondrial OS=Kluyverom... [more]
ATPO_ASHGO2.005e-1430.00ATP synthase subunit 5, mitochondrial OS=Ashbya go... [more]
ATPO_CANGA3.201e-1226.84ATP synthase subunit 5, mitochondrial OS=Candida g... [more]
ATPD_PELUB4.623e-1126.29ATP synthase subunit delta OS=Pelagibacter ubique ... [more]
ATPD_SPHWW6.038e-1128.40ATP synthase subunit delta OS=Sphingomonas wittich... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1DC10ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257846 ID=DY257846; Name=DY257846; organism=Citrus clementina; type=EST; length=1128bp
GAACTGGGCAGATTAGGGTTTTTAAATTTAGGAAATGGCAACGGTAAGTC
GTATCAGATCGAGCCTCTCTGTATTCAACAAGATTCTCAGATCCAATTCT
CAGCTATCCCCTCCTCATCCACAGTTATCGAAAGGTTTTTCCACTTCGTC
GGTGCAGAAGGAGCAAAAAGTTAAGGTGCCTCTGGCTTTGTTTGGAGGTT
CAGGAAATTATGCCTCTGCTCTGTACATTGCCGCAGTGAAAACTAACGCA
CTGGAGAAGGTTGAGTCTGAGATTCTTGACCTTGTCGAGGCTTCAAAGAA
GGCTGATACATATTTTCAGTTCACAAAGGACTTGTCTGTGCCTGCAGAGA
CAAGAGTTAAGGCCATTAACGAAATCTGTACTCAGGCTAAATTTTCAGAT
GTTACGAAGCACTTCTTAGTTGTTTTGGCTGAGAATGGGAGGCTTAGAAA
CTTAGACACCATCGCTAAGAGGTTTGTGGAGTTAACCATGGCACACAAGG
GCGAAGTAAAAGTTACTGTTACATCCGTTATTCCACTTCCCCCAGAAGAA
GAGAGAGAGTTGAAAGAGACACTGCAAGAGACACTTGGCCAAGGGAAGAA
AGTCAAGGTTGAACAGAAGGTTGATCCTAGCATTCTTGGTGGGCTCGTAG
TAGAGTTTGGGCAAAAGGTGTTTGACATGTCCATTAAGTCTAGGGCGCGG
CAGATGGAGAGGTTCCTACGTGAGCCCATTCATTTTGGCACCCTCTAAAA
AGGCTGCCACAGCCCCAGGGCGCAAATTTTTAAGATGATTATGCAACAAC
TGGAACGCTCCAAGAAGTAAAAGAACCATTCAAGCTCTTGTTTGATGCTG
TTTGCTTGTGCTCCGCCATTTCTGAATGAATTGAATCATGGGCAAAATAA
AATTCACATCTTGATCACTTTGCTTTCATGGCAAATGGGTTCTGATGGAC
ATCAACATTTTTTGTTTGGGGTTTCGGTTCGGACATTTACCTTTTAAGGG
GAATAATTTGGTTTGTTCAAAATAAATTACTCGGTCCCTGGCAATGGAAA
CGGGTTCCTCAGGGACAAAAGCCTCTTTTTTAGGAAAAATACCGGTTGGT
TAAAAAAAGTGGTTCCCCATTTTTTTTT
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