DY257851

Overview
NameDY257851
Unique NameDY257851
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1130
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY257851_ssr96 microsatellite DY257851_ssr96:96..107. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10038 contig Ccv1_Contig10038:4..1133. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257851 vs. ExPASy Swiss-Prot
Match: SURA_NITOC (Chaperone surA OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=surA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 7.160e-12
Identity = 38/123 (30.89%), Postives = 71/123 (57.72%), Query Frame = 3
Query:  294 QHLLVKEDDLNL-------LSELQRRVSQGEDLSDLAVEHSICPSKG-EGGMLGWVRKGQLVPEFEEVAFTTPLNKVAR-CKTKFGWHLLQVLSEREASLLQDIQPDELHKKMQDPNFHKEAQ 635
            +H+L++ D+L         LS+L++R+  G+D S+LA  HS   +   +GG LGWV  GQ++P FEE   +    +++   KT+FGWH++QVL  R+ ++ ++   +    +++     +E +
Sbjct:  286 RHILLRADELASEREVQLRLSQLRQRILSGDDFSELAQAHSDDKASALKGGDLGWVSPGQMIPRFEEAMRSLEPGEISEPFKTQFGWHVVQVLDRRQENMTEEFNRNRAKMEIRQRKVEEELE 408          
BLAST of DY257851 vs. ExPASy Swiss-Prot
Match: SURA_ALCBS (Chaperone surA OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=surA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.721e-11
Identity = 41/125 (32.80%), Postives = 68/125 (54.40%), Query Frame = 3
Query:  291 VQHLLVKEDDLNLLSELQRRVSQGED--------LSDLAVEHSICP-SKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVARC-KTKFGWHLLQVLSEREASLLQDIQPDELHKKMQDPNFHKEAQ 635
            V+H+L+K D L    + Q+R  +  D          + A E S  P S   GG LGWV KG++VPEFE+V   TP+ +++   +++FGWH L+V   R+A +  + +  +  + +Q   F +E +
Sbjct:  295 VRHVLIKADALTSAEQAQQRAIRLHDEVAAGKRQFKETAAEFSDDPGSARNGGELGWVNKGEMVPEFEQVMLNTPVGELSPVFESQFGWHFLRVDDIRDADMSTEFRRMQATQALQKRRFEEELE 419          
BLAST of DY257851 vs. ExPASy Swiss-Prot
Match: SURA_PSEF5 (Chaperone surA OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=surA PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 4.641e-11
Identity = 45/146 (30.82%), Postives = 74/146 (50.68%), Query Frame = 3
Query:  282 EILVQHLLVK-------EDDLNLLSELQRRVSQGEDLSDLAVEHSICPSKG-EGGMLGWVRKGQLVPEFEEVAFTTPLNKVAR-CKTKFGWHLLQVLSEREASLLQDIQPDELHKKMQDPNFHKEAQ--LIDVREPEEVALSSLPG 686
            E+ V+H+L+K       E+   L  +L  R+  GED ++LA  +S  P     GG L W+    LVPEF EV   TP  ++++  K+ +GWH+L+VL  R        +  +    +++  + +E Q  L  +R+   V +  LPG
Sbjct:  276 EVHVRHILIKPSEIRSEEETKRLAQKLYDRIEAGEDFAELAKSYSEDPGSALNGGDLNWIDPNALVPEFREVMAKTPQGQLSKPFKSPYGWHVLEVLGRRATDSTSQAREQQAMTVLRNRKYDEELQTWLRQIRDEAYVEI-KLPG 420          
BLAST of DY257851 vs. ExPASy Swiss-Prot
Match: SURA_PSE14 (Chaperone surA OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=surA PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 4.641e-11
Identity = 45/146 (30.82%), Postives = 73/146 (50.00%), Query Frame = 3
Query:  282 EILVQHLLVKEDDLNLLSELQR-------RVSQGEDLSDLAVEHSICPSKG-EGGMLGWVRKGQLVPEFEEVAFTTPLNKVAR-CKTKFGWHLLQVLSEREASLLQDIQPDELHKKMQDPNFHKEAQ--LIDVREPEEVALSSLPG 686
            E+ V+H+L+K  ++    E +R       R+  GED ++LA   S  P     GG L WV    LVPEF +V   TP  ++++  KT +GWH+L+VL  R        +  +    +++  + +E Q  L  +R+   V +  LPG
Sbjct:  278 EVHVRHILIKPSEIRNEEETKRLAEKIYDRIQNGEDFAELAKSFSEDPGSALNGGDLNWVDPNSLVPEFRQVMNETPQGELSKPFKTAYGWHVLEVLGRRSTDATDQAREQQALNVLRNRKYDEELQTWLRQIRDEAYVEI-KLPG 422          
BLAST of DY257851 vs. ExPASy Swiss-Prot
Match: SURA_PSESM (Chaperone surA OS=Pseudomonas syringae pv. tomato GN=surA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 7.916e-11
Identity = 44/146 (30.14%), Postives = 73/146 (50.00%), Query Frame = 3
Query:  282 EILVQHLLVKEDDLN-------LLSELQRRVSQGEDLSDLAVEHSICPSKG-EGGMLGWVRKGQLVPEFEEVAFTTPLNKVAR-CKTKFGWHLLQVLSEREASLLQDIQPDELHKKMQDPNFHKEAQ--LIDVREPEEVALSSLPG 686
            E+ V+H+L+K  ++        L  ++  R+  GED + LA   S  P     GG L WV    LVPEF +V  +TP  ++++  KT +GWH+L+VL  R        +  +    +++  + +E Q  L  +R+   V +  LPG
Sbjct:  278 EVHVRHILIKPSEIRSEEATKLLAQKIYERIENGEDFATLAKSFSEDPGSALNGGDLNWVDPNSLVPEFRDVMSSTPQGELSKPFKTAYGWHVLEVLGRRATDATGQARDQQALSVLRNRKYDEELQTWLRQIRDEAYVEI-KLPG 422          
The following BLAST results are available for this feature:
BLAST of DY257851 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
SURA_NITOC7.160e-1230.89Chaperone surA OS=Nitrosococcus oceani (strain ATC... [more]
SURA_ALCBS2.721e-1132.80Chaperone surA OS=Alcanivorax borkumensis (strain ... [more]
SURA_PSEF54.641e-1130.82Chaperone surA OS=Pseudomonas fluorescens (strain ... [more]
SURA_PSE144.641e-1130.82Chaperone surA OS=Pseudomonas syringae pv. phaseol... [more]
SURA_PSESM7.916e-1130.14Chaperone surA OS=Pseudomonas syringae pv. tomato ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1DD07ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257851 ID=DY257851; Name=DY257851; organism=Citrus clementina; type=EST; length=1130bp
GGAAAATCAAAGAAGCGATGATGCTAAGAGCAAGTCGGTTAGCATCGCCT
GTGCTCTGTGCTATTACACAGTCTCTGATTCCCACTCTAAACCTGTCTTC
TTCTTCTTCACTTTCAATCTTTCAAAAACCCGCCTCTTTTTCTTCTTTTT
ACAAATCCTTAAACCCAGCTTCCAATTCCAATTCTTTTCATATTCATATT
ATATCCCGAAGCTTTACATCTCCTAAAGCTGCTTCATTTAGTTCTGGGAC
TGAGGGTAGTAGCCCAGGTGGTGGCGATAGAGAAATATTGGTCCAACACT
TGCTTGTTAAAGAAGATGACCTCAACCTACTGTCGGAACTTCAACGCAGG
GTTTCTCAAGGAGAGGATTTGAGTGATCTTGCCGTTGAACACTCAATTTG
TCCATCCAAAGGAGAGGGAGGAATGCTTGGCTGGGTGAGGAAGGGGCAAT
TGGTTCCAGAATTTGAGGAGGTTGCATTCACTACCCCTTTGAACAAAGTT
GCAAGGTGTAAAACAAAATTTGGATGGCACTTGTTGCAAGTTCTATCTGA
GAGGGAAGCGTCATTACTTCAAGACATTCAGCCAGATGAACTTCACAAAA
AAATGCAGGATCCCAATTTTCATAAAGAGGCACAATTGATTGATGTTCGA
GAGCCTGAAGAAGTTGCCCTTTCTTCTTTGCCGGGATTTCAAGTGCTTCC
CCTCCGCCAATTTGGAAGCTGGGGACCAGATGTAACTGCCAAGTTTGATC
CTCAGAAGGATACATATGTAATGTGTCACCATGGCATGCGGTCTTTACAG
GTTGCTCAGTGGTTGCAGACACAGGGTTTTAGGAGAGTATTTAACGTATC
TGGCGGAATACATGCCTATGCTACCAAGGTTGATCCATCAATTCCTACGT
ACTGATGCTGACAAACTCTTCTTCTCTATGAGTGAAGTAACCTTTCTTAC
TCCTCTATGGAGGAGGAACTTCATAATAATGGAATTAGCATATTGAATTA
TAAATAAAATTTGCACGGTTCCCTGGTTAAAGCTTTCGGTACAAAACTGG
TTTTCTTGACAAACATTTCGGAACACGGGCAAAAAAAAAAAATTTAAGCC
CTTAAAAAAATTCATTTTCCTTTTTTTACC
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