DY257855

Overview
NameDY257855
Unique NameDY257855
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length815
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1037 contig Ccv1_Contig1037:1..815. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257855 vs. ExPASy Swiss-Prot
Match: UB2D2_MOUSE (Ubiquitin-conjugating enzyme E2 D2 OS=Mus musculus GN=Ube2d2 PE=1 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 1.952e-68
Identity = 118/147 (80.27%), Postives = 130/147 (88.44%), Query Frame = 2
Query:   80 MASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSNSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 520
            MA KRI+KEL DL +DPPA CSAGPV DDMFHWQATIMGP++SP+ GGVF ++IHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YKTDR KY   AR WTQKYAM
Sbjct:    1 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM 147          
BLAST of DY257855 vs. ExPASy Swiss-Prot
Match: UB2D2_HUMAN (Ubiquitin-conjugating enzyme E2 D2 OS=Homo sapiens GN=UBE2D2 PE=1 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 1.952e-68
Identity = 118/147 (80.27%), Postives = 130/147 (88.44%), Query Frame = 2
Query:   80 MASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSNSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 520
            MA KRI+KEL DL +DPPA CSAGPV DDMFHWQATIMGP++SP+ GGVF ++IHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YKTDR KY   AR WTQKYAM
Sbjct:    1 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM 147          
BLAST of DY257855 vs. ExPASy Swiss-Prot
Match: UB2D2_BOVIN (Ubiquitin-conjugating enzyme E2 D2 OS=Bos taurus GN=UBE2D2 PE=2 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 1.952e-68
Identity = 118/147 (80.27%), Postives = 130/147 (88.44%), Query Frame = 2
Query:   80 MASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSNSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 520
            MA KRI+KEL DL +DPPA CSAGPV DDMFHWQATIMGP++SP+ GGVF ++IHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YKTDR KY   AR WTQKYAM
Sbjct:    1 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM 147          
BLAST of DY257855 vs. ExPASy Swiss-Prot
Match: UBCD1_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=eff PE=1 SV=1)

HSP 1 Score: 257.684 bits (657), Expect = 5.681e-68
Identity = 117/147 (79.59%), Postives = 130/147 (88.44%), Query Frame = 2
Query:   80 MASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSNSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 520
            MA KRINKEL+DL +DPPA CSAGPV DD+FHWQATIMGP +SP+ GGVF ++IHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YKTDR KY   AR WT+KYAM
Sbjct:    1 MALKRINKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNELAREWTRKYAM 147          
BLAST of DY257855 vs. ExPASy Swiss-Prot
Match: UB2D2_PIG (Ubiquitin-conjugating enzyme E2 D2 OS=Sus scrofa GN=UBE2D2 PE=2 SV=1)

HSP 1 Score: 257.684 bits (657), Expect = 5.681e-68
Identity = 117/147 (79.59%), Postives = 130/147 (88.44%), Query Frame = 2
Query:   80 MASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSNSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 520
            MA KRI+KEL DL +DPPA CSAGPV DDMFHWQATIMGP++SP+ GGVF ++IHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YKTDR KY   +R WTQKYAM
Sbjct:    1 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYAM 147          
BLAST of DY257855 vs. ExPASy Swiss-Prot
Match: UB2D3_BOVIN (Ubiquitin-conjugating enzyme E2 D3 OS=Bos taurus GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 9.690e-68
Identity = 117/147 (79.59%), Postives = 129/147 (87.76%), Query Frame = 2
Query:   80 MASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSNSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 520
            MA KRINKEL DL +DPPA CSAGPV DDMFHWQATIMGP++SP+ GGVF ++IHFP DYPFKPPKVAF T+++HPNINSN SICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YKTDR KY   +R WTQKYAM
Sbjct:    1 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNDSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYAM 147          
BLAST of DY257855 vs. ExPASy Swiss-Prot
Match: UBC5_YEAST (Ubiquitin-conjugating enzyme E2-16 kDa OS=Saccharomyces cerevisiae GN=UBC5 PE=1 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 1.653e-67
Identity = 115/146 (78.77%), Postives = 134/146 (91.78%), Query Frame = 2
Query:   83 ASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSNSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 520
            +SKRI KEL DL +DPPASCSAGPV DD++HWQA+IMGPS+SP+AGGVF +SIHFP DYPFKPPKV F TK++HPNINS+G+ICLDILK+QWSPALT+SKVLLSICSLLTD NPDDPLVPEIA +YKTD+AKYE TA+ WT+KYA+
Sbjct:    3 SSKRIAKELSDLGRDPPASCSAGPVGDDLYHWQASIMGPSDSPYAGGVFFLSIHFPTDYPFKPPKVNFTTKIYHPNINSSGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPLVPEIAQIYKTDKAKYEATAKEWTKKYAV 148          
BLAST of DY257855 vs. ExPASy Swiss-Prot
Match: UBC4_CANAL (Ubiquitin-conjugating enzyme E2 4 OS=Candida albicans GN=UBC4 PE=2 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 2.159e-67
Identity = 114/147 (77.55%), Postives = 132/147 (89.80%), Query Frame = 2
Query:   80 MASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSNSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 520
            M+ KRINKEL DL +DPP+SCSAGPV DD++HWQA+IMGP +SP+AGGVF +SIHFP DYP KPPK+A  TK++HPNINSNG+ICLDILK+QWSPALTISKVLLSICSLLTD NPDDPLVPEIAH+YK DR KYE TA+ WT+KYA+
Sbjct:    1 MSLKRINKELSDLGRDPPSSCSAGPVGDDLYHWQASIMGPPDSPYAGGVFFLSIHFPTDYPLKPPKIALTTKIYHPNINSNGNICLDILKDQWSPALTISKVLLSICSLLTDANPDDPLVPEIAHIYKQDRKKYEATAKEWTKKYAV 147          
BLAST of DY257855 vs. ExPASy Swiss-Prot
Match: UBC2_CAEEL (Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditis elegans GN=let-70 PE=1 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 2.819e-67
Identity = 116/147 (78.91%), Postives = 128/147 (87.07%), Query Frame = 2
Query:   80 MASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSNSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 520
            MA KRI KEL+DL +DPPA CSAGPV DD+FHWQATIMGP  SP+ GGVF ++IHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YKTDR +Y   AR WTQKYAM
Sbjct:    1 MALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQKYAM 147          
BLAST of DY257855 vs. ExPASy Swiss-Prot
Match: UBC12_ARATH (Probable ubiquitin-conjugating enzyme E2 12 OS=Arabidopsis thaliana GN=UBC12 PE=2 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 4.071e-66
Identity = 116/149 (77.85%), Postives = 136/149 (91.28%), Query Frame = 2
Query:   80 MASKRINKELKDLQKDPPASCSAGPVAD-DMFHWQATIMGPSNSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG 523
            MASKRI++EL+D+Q+ PPA+CSAGPVA+ D+FHWQATIMGP +SP++GGVF VSI F  DYPFKPPKV F+TKV+HPNI+S GSICLDILKEQWSPA T SKVLLSICSLLTDPNP+DPLVPEIAH+YK D++KYE+TA+ WTQKYAMG
Sbjct:    1 MASKRISRELRDMQRHPPANCSAGPVAEEDIFHWQATIMGPHDSPYSGGVFTVSIDFSSDYPFKPPKVNFKTKVYHPNIDSKGSICLDILKEQWSPAPTTSKVLLSICSLLTDPNPNDPLVPEIAHLYKVDKSKYESTAQKWTQKYAMG 149          
The following BLAST results are available for this feature:
BLAST of DY257855 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 267
Match NameE-valueIdentityDescription
UB2D2_MOUSE1.952e-6880.27Ubiquitin-conjugating enzyme E2 D2 OS=Mus musculus... [more]
UB2D2_HUMAN1.952e-6880.27Ubiquitin-conjugating enzyme E2 D2 OS=Homo sapiens... [more]
UB2D2_BOVIN1.952e-6880.27Ubiquitin-conjugating enzyme E2 D2 OS=Bos taurus G... [more]
UBCD1_DROME5.681e-6879.59Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi... [more]
UB2D2_PIG5.681e-6879.59Ubiquitin-conjugating enzyme E2 D2 OS=Sus scrofa G... [more]
UB2D3_BOVIN9.690e-6879.59Ubiquitin-conjugating enzyme E2 D3 OS=Bos taurus G... [more]
UBC5_YEAST1.653e-6778.77Ubiquitin-conjugating enzyme E2-16 kDa OS=Saccharo... [more]
UBC4_CANAL2.159e-6777.55Ubiquitin-conjugating enzyme E2 4 OS=Candida albic... [more]
UBC2_CAEEL2.819e-6778.91Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditi... [more]
UBC12_ARATH4.071e-6677.85Probable ubiquitin-conjugating enzyme E2 12 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1DE01ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257855 ID=DY257855; Name=DY257855; organism=Citrus clementina; type=EST; length=815bp
GCGGGGGACTTTGACTCGCAACGTAAAATAACACCAGACCCAAACTCTCA
GGCCACAAAGTTTGTTGAGAAATTCCCAGATGGCTTCAAAACGGATCAAC
AAGGAGTTGAAGGACCTACAGAAGGACCCTCCTGCTTCTTGTAGCGCTGG
CCCTGTTGCTGATGACATGTTCCATTGGCAAGCAACAATTATGGGCCCAT
CAAACAGCCCATTTGCTGGGGGTGTATTTCTTGTATCCATTCATTTCCCA
CCTGATTATCCATTCAAGCCACCGAAGGTGGCCTTCCGTACTAAGGTTTT
CCACCCTAACATCAACAGCAATGGTAGCATCTGTCTTGACATTCTCAAGG
AGCAGTGGAGCCCTGCTTTGACAATATCCAAGGTACTTCTGTCAATTTGC
TCACTACTTACTGATCCGAACCCAGATGACCCACTTGTGCCTGAGATTGC
TCACATGTACAAGACTGACAGAGCCAAATATGAGACTACTGCTCGATCCT
GGACCCAGAAGTATGCCATGGGTTAAGAGGGGCTAGGCTGTACGCCCCTG
AGAACATTAATGGCTTGTGGTCCTATTAGTAAATAATAGAAATAAGTTTG
TTTCAGATATTAAAAGACGATATTTGGTTTTGTTTACTAAGTTGTTAAAA
GGTTTTATGTGGGGTTACTTTCCAATTTAGCATTGTCCTTCAATACTTAA
ATTATAATTTACTGCAGAATGGAGCTGCCTTTGCCTTTATTTATTGTTGG
TAATGGTCTATTTGAAGGCTTCTAGAATGCGATTTATAGTAATGAACGGA
ACCTCTCCATTCCTG
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