DY257855

Overview
NameDY257855
Unique NameDY257855
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length815
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257855 vs. ExPASy Swiss-Prot
Match: UBE2Z_MOUSE (Ubiquitin-conjugating enzyme E2 Z OS=Mus musculus GN=Ube2z PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 5.961e-17
Identity = 57/161 (35.40%), Postives = 78/161 (48.45%), Query Frame = 2
Query:   68 RNSQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSNSPFAGGVFLVSIHFPPDYPFKPPKVAF-----RTKVFHPNINSNGSICLDIL----KEQWSPALTISKVLLSICSLLTD-PNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 520
            R +     RI +++  + K+PP      P   DM    A I GP ++P+ GG FL     PPDYP  PP+V        T  F+PN   NG +CL IL       WSPA +IS VL+SI SL+T+ P  ++P   +  H    D   Y    R  T + A+
Sbjct:   97 RTAPQCLLRIKRDIMSIYKEPPPGMFVVPDTVDMTKIHALITGPFDTPYEGGFFLFVFRCPPDYPIHPPRVKLMTTGNNTVRFNPNFYRNGKVCLSILGTWTGPAWSPAQSISSVLISIQSLMTENPYHNEPGFEQERH--PGDSKNYNECIRHETIRVAV 255          
BLAST of DY257855 vs. ExPASy Swiss-Prot
Match: UBE2Z_HUMAN (Ubiquitin-conjugating enzyme E2 Z OS=Homo sapiens GN=UBE2Z PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 5.961e-17
Identity = 57/161 (35.40%), Postives = 78/161 (48.45%), Query Frame = 2
Query:   68 RNSQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSNSPFAGGVFLVSIHFPPDYPFKPPKVAF-----RTKVFHPNINSNGSICLDIL----KEQWSPALTISKVLLSICSLLTD-PNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 520
            R +     RI +++  + K+PP      P   DM    A I GP ++P+ GG FL     PPDYP  PP+V        T  F+PN   NG +CL IL       WSPA +IS VL+SI SL+T+ P  ++P   +  H    D   Y    R  T + A+
Sbjct:   95 RTAPQCLLRIKRDIMSIYKEPPPGMFVVPDTVDMTKIHALITGPFDTPYEGGFFLFVFRCPPDYPIHPPRVKLMTTGNNTVRFNPNFYRNGKVCLSILGTWTGPAWSPAQSISSVLISIQSLMTENPYHNEPGFEQERH--PGDSKNYNECIRHETIRVAV 253          
BLAST of DY257855 vs. ExPASy Swiss-Prot
Match: UBE2F_XENLA (NEDD8-conjugating enzyme UBE2F OS=Xenopus laevis GN=ube2f PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.961e-17
Identity = 49/158 (31.01%), Postives = 77/158 (48.73%), Query Frame = 2
Query:   65 LRNSQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSNSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ------WSPALTISKVLLSICSLLTD-PNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 517
            +R   +  + + KE+ +L+ + P +C       +  H+    + P  S + GG F   I  P  Y   PPKV   T+++HPNI   G ICL +L+E       W+P  T+  V+  + SL TD  N DDPL  E A  +  D+ +Y      + ++YA
Sbjct:   27 MRRISVRDRLLVKEVAELEANLPCTCKVNFPDPNKLHYFHLTVSPDESYYQGGRFQFEIEVPDAYNMVPPKVKCLTRIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKDEYRNKVEDYIKRYA 184          
BLAST of DY257855 vs. ExPASy Swiss-Prot
Match: U2D2L_HUMAN (Putative ubiquitin-conjugating enzyme E2 D2-like protein OS=Homo sapiens GN=UBE2DNL PE=5 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.961e-17
Identity = 41/75 (54.67%), Postives = 51/75 (68.00%), Query Frame = 2
Query:   80 MASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSNSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFH 304
            MA K I+KE  +L +DP   CSAGPV DDM HWQATI  P++S + GGVF   + FP DY FKPPK+ F   ++H
Sbjct:    1 MALKLIHKEFLELARDPQPHCSAGPVWDDMLHWQATITRPNDSSYLGGVFF--LKFPSDYLFKPPKIKFTNGIYH 73          
BLAST of DY257855 vs. ExPASy Swiss-Prot
Match: UBE2U_MACFA (Ubiquitin-conjugating enzyme E2 U OS=Macaca fascicularis GN=UBE2U PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.785e-17
Identity = 46/145 (31.72%), Postives = 83/145 (57.24%), Query Frame = 2
Query:   95 INKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSNSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSN-GSICLDIL--KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 520
            + ++  DL+++     +A PV++DM  W+  I G  NS + G VF ++IHF  +Y + PP V F T  FHPN++ + G  C+D L   ++W+   T+S +LL++  +L++P  ++P+  E A +   D + Y T  + + +   M
Sbjct:    9 LQRDFYDLKENNYKGITARPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFVTIPFHPNVDPHTGQPCIDFLDNPKKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILTKDESLYRTILKLFNRPLQM 153          
BLAST of DY257855 vs. ExPASy Swiss-Prot
Match: UBC16_ARATH (Probable ubiquitin carrier protein E2 16 OS=Arabidopsis thaliana GN=UBC16 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.785e-17
Identity = 43/114 (37.72%), Postives = 68/114 (59.65%), Query Frame = 2
Query:   74 SQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSNSPFAGGVFLVSIHFPPDYPFKPPKVAF-RTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLT 412
            S++A+ R+ KEL + Q +PP       V D++  W   ++G   + +A   + + + FP  YP + P+V F      HP+I SNG ICLDIL + WSPA+T+S + +SI S+L+
Sbjct:   13 SKIATNRLQKELVEWQMNPPTGFKH-KVTDNLQRWIIEVIGAPGTLYANDTYQLQVDFPEHYPMESPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISILSMLS 125          
BLAST of DY257855 vs. ExPASy Swiss-Prot
Match: UBE2F_XENTR (NEDD8-conjugating enzyme UBE2F OS=Xenopus tropicalis GN=ube2f PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.017e-16
Identity = 49/157 (31.21%), Postives = 76/157 (48.41%), Query Frame = 2
Query:   68 RNSQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSNSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ------WSPALTISKVLLSICSLLTD-PNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 517
            R   +  + + KE+ +L+ + P +C       +  H+    + P  S + GG F   I  P  Y   PPKV   T+++HPNI   G ICL +L+E       W+P  T+  V+  + SL TD  N DDPL  E A  +  D+ +Y      + ++YA
Sbjct:   28 RRVSVRDRLLVKEVAELEANLPCTCKVNFPDPNKLHYFHLTVSPDESYYQGGRFQFEIEVPDAYNMVPPKVKCLTRIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKDEYRNKVEDYIKRYA 184          
BLAST of DY257855 vs. ExPASy Swiss-Prot
Match: UBC7_WHEAT (Ubiquitin-conjugating enzyme E2 7 OS=Triticum aestivum GN=UBC7 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.328e-16
Identity = 46/156 (29.49%), Postives = 82/156 (52.56%), Query Frame = 2
Query:   83 ASKRINKELKDLQKDPPASCSAGPVAD-DMFHWQATIMGPSNSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICL------------DILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQK 511
            +S R + E+   +  P      G V D ++F WQ TI+GP  + + GG F   + FP +YP  PP V F ++++HPN+  +G +C+            ++  E+W+P  T+  ++LSI S+L+ PN + P   E A  ++  + +++   R   +K
Sbjct:   10 SSSRSSSEIS--RTTPSMGFQLGFVDDSNVFEWQVTIIGPPETLYDGGYFNAIMSFPQNYPNSPPTVRFTSEMWHPNVYPDGRVCISIHPPGDDPNGYELASERWTPVHTVESIVLSIISMLSSPNDESPANIEAAKDWREKQDEFKKKVRRAVRK 163          
BLAST of DY257855 vs. ExPASy Swiss-Prot
Match: UBC4_MIMIV (Probable bifunctional E2/E3 enzyme R795 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R795 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.734e-16
Identity = 45/152 (29.61%), Postives = 77/152 (50.66%), Query Frame = 2
Query:   71 NSQMASK--RINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSNSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 520
            N++++ K  R+ +E+ D+ K+            D+  W+    GP ++P+  G +L  I F  +YP   P + F T + H NIN+ G +C  IL   ++P + IS +L  I  LL +P+ +DPL   +A +Y      YE     +  K+A+
Sbjct: 1128 NTKLSQKLIRVQREIVDVMKNQHPDIDVYINEQDISFWKIVFKGPDSTPYKNGTWLAYIQFTEEYPNIAPNIRFVTPIKHCNINNYGRVCHSILDRNYTPNVKISLILQCIYGLLLNPDVNDPLDTNLAMIYYDANGLYEAQIIDYVNKFAL 1279          
BLAST of DY257855 vs. ExPASy Swiss-Prot
Match: UBE2F_CHICK (NEDD8-conjugating enzyme UBE2F OS=Gallus gallus GN=UBE2F PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.958e-16
Identity = 50/158 (31.65%), Postives = 79/158 (50.00%), Query Frame = 2
Query:   68 RNSQMASKRINKELKDLQKDPPASCSAG-PVADDMFHWQATIMGPSNSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ------WSPALTISKVLLSICSLLTD-PNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 517
            R   +  K + KE+ +L+ + P +C    P  + + ++Q T++ P    + GG F   I  P  Y   PPKV   T+++HPNI   G ICL +L+E       W+P  T+  V+  + SL TD  N DDPL  E A  +  D+  +      + ++YA
Sbjct:   28 RRVSVRDKLLVKEVAELEANLPCTCKVNFPDPNKLHYFQLTVI-PDEGYYQGGKFQFEIEVPDAYNMVPPKVKCLTRIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVEDYIKRYA 184          
The following BLAST results are available for this feature:
BLAST of DY257855 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 267
Match NameE-valueIdentityDescription
UBE2Z_MOUSE5.961e-1735.40Ubiquitin-conjugating enzyme E2 Z OS=Mus musculus ... [more]
UBE2Z_HUMAN5.961e-1735.40Ubiquitin-conjugating enzyme E2 Z OS=Homo sapiens ... [more]
UBE2F_XENLA5.961e-1731.01NEDD8-conjugating enzyme UBE2F OS=Xenopus laevis G... [more]
U2D2L_HUMAN5.961e-1754.67Putative ubiquitin-conjugating enzyme E2 D2-like p... [more]
UBE2U_MACFA7.785e-1731.72Ubiquitin-conjugating enzyme E2 U OS=Macaca fascic... [more]
UBC16_ARATH7.785e-1737.72Probable ubiquitin carrier protein E2 16 OS=Arabid... [more]
UBE2F_XENTR1.017e-1631.21NEDD8-conjugating enzyme UBE2F OS=Xenopus tropical... [more]
UBC7_WHEAT1.328e-1629.49Ubiquitin-conjugating enzyme E2 7 OS=Triticum aest... [more]
UBC4_MIMIV1.734e-1629.61Probable bifunctional E2/E3 enzyme R795 OS=Acantha... [more]
UBE2F_CHICK2.958e-1631.65NEDD8-conjugating enzyme UBE2F OS=Gallus gallus GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1DE01ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257855 ID=DY257855; Name=DY257855; organism=Citrus clementina; type=EST; length=815bp
GCGGGGGACTTTGACTCGCAACGTAAAATAACACCAGACCCAAACTCTCA
GGCCACAAAGTTTGTTGAGAAATTCCCAGATGGCTTCAAAACGGATCAAC
AAGGAGTTGAAGGACCTACAGAAGGACCCTCCTGCTTCTTGTAGCGCTGG
CCCTGTTGCTGATGACATGTTCCATTGGCAAGCAACAATTATGGGCCCAT
CAAACAGCCCATTTGCTGGGGGTGTATTTCTTGTATCCATTCATTTCCCA
CCTGATTATCCATTCAAGCCACCGAAGGTGGCCTTCCGTACTAAGGTTTT
CCACCCTAACATCAACAGCAATGGTAGCATCTGTCTTGACATTCTCAAGG
AGCAGTGGAGCCCTGCTTTGACAATATCCAAGGTACTTCTGTCAATTTGC
TCACTACTTACTGATCCGAACCCAGATGACCCACTTGTGCCTGAGATTGC
TCACATGTACAAGACTGACAGAGCCAAATATGAGACTACTGCTCGATCCT
GGACCCAGAAGTATGCCATGGGTTAAGAGGGGCTAGGCTGTACGCCCCTG
AGAACATTAATGGCTTGTGGTCCTATTAGTAAATAATAGAAATAAGTTTG
TTTCAGATATTAAAAGACGATATTTGGTTTTGTTTACTAAGTTGTTAAAA
GGTTTTATGTGGGGTTACTTTCCAATTTAGCATTGTCCTTCAATACTTAA
ATTATAATTTACTGCAGAATGGAGCTGCCTTTGCCTTTATTTATTGTTGG
TAATGGTCTATTTGAAGGCTTCTAGAATGCGATTTATAGTAATGAACGGA
ACCTCTCCATTCCTG
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