DY257855

Overview
NameDY257855
Unique NameDY257855
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length815
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257855 vs. ExPASy Swiss-Prot
Match: UB2FB_MOUSE (NEDD8-conjugating enzyme UBE2F-B OS=Mus musculus GN=Ube2fb PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.056e-14
Identity = 48/157 (30.57%), Postives = 71/157 (45.22%), Query Frame = 2
Query:   68 RNSQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSNSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ------WSPALTISKVLLSICSLLTD-PNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 517
            R   M  K +  E+ +L+ + P +C       +  H     + P    + GG F   I  P  Y   PPKV   TK++HPNI   G ICL +L+E       W+P  T+  V+  + SL TD  N  DPL  E A  +  D+  +      + ++YA
Sbjct:   28 RRFSMRDKLLVTEVAELEANLPWTCKVHFPDPNKLHCFQLTVSPDEGYYQGGNFQFEIEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSADGTGWAPTRTLKDVVWGLNSLFTDLLNFYDPLNIEAAEHHLQDKEDFRDKVDEYIRRYA 184          
BLAST of DY257855 vs. ExPASy Swiss-Prot
Match: UBC32_ARATH (Ubiquitin carrier protein E2 32 OS=Arabidopsis thaliana GN=UBC32 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.795e-13
Identity = 40/117 (34.19%), Postives = 64/117 (54.70%), Query Frame = 2
Query:   83 ASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSNSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILK---EQWSPALTISKVLLSICSLL-TDPN 421
            A KRI +E+K++Q +P     + P+ +++F WQ  I GP ++ F GG++   I  P DYPFKPP     T   +    +N  ICL I     E W P+ ++   L+++ + + T PN
Sbjct:   12 AVKRILQEVKEMQANPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPADYPFKPPSFMLLTP--NGRFETNTKICLSISNYHPEHWQPSWSVRTALVALIAFMPTSPN 126          
BLAST of DY257855 vs. ExPASy Swiss-Prot
Match: UBCX_YEAST (Ubiquitin-conjugating enzyme E2-21 kDa OS=Saccharomyces cerevisiae GN=PEX4 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.344e-13
Identity = 51/153 (33.33%), Postives = 79/153 (51.63%), Query Frame = 2
Query:   74 SQMASKRINKE----LKDLQKDPPASC-------SAGPVAD-DMFHWQATIMGPSNSPFAGGVFLVSIHFPPDYPFKPPKVAF-RTKVFHPNINS-NGSICLDILK-EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKT-DRAKYE 484
            S     RI KE    LK L  D P +        S  P+ + D+  W+A I GPS++P+    F + I  P  YP  PPK++F +  + H N+ S  G ICL+ILK E+W+P   +   + ++  LL +P  D PL  +I ++ +  D + Y+
Sbjct:   15 SDTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGNIIRCGDMSAYQ 167          
BLAST of DY257855 vs. ExPASy Swiss-Prot
Match: UBC6_YEAST (Ubiquitin-conjugating enzyme E2 6 OS=Saccharomyces cerevisiae GN=UBC6 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.344e-13
Identity = 40/134 (29.85%), Postives = 67/134 (50.00%), Query Frame = 2
Query:   74 SQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSNSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICL---DILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKT 466
            ++ A KR+ KE K + ++PP    A P  D++  W   I GP+++P+ GG +  ++ FP DYP+KPP +   T   +     N  +CL   D   + W+P  ++S +L  + S +T        +    H  KT
Sbjct:    3 TKQAHKRLTKEYKLMVENPPPYILARPNEDNILEWHYIITGPADTPYKGGQYHGTLTFPSDYPYKPPAIRMITP--NGRFKPNTRLCLSMSDYHPDTWNPGWSVSTILNGLLSFMTSDEATTGSITTSDHQKKT 134          
BLAST of DY257855 vs. ExPASy Swiss-Prot
Match: UBCX_PICPA (Ubiquitin-conjugating enzyme E2-24 kDa OS=Pichia pastoris GN=PEX4 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.222e-13
Identity = 54/194 (27.84%), Postives = 87/194 (44.85%), Query Frame = 2
Query:   83 ASKRINKELKDLQKDPPASCSAG-----------PVADDMFH-WQATIMGPSNSPFAGGVFLVSIHFPPDYPFKPPKVAFRT----------------------------------KVFHPNINSN-GSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYK-TDRAKYETTARSWTQKYAM 520
            A KR+ +E + + K+     SA            PV++D F+ W A + GP+++ +    + + I  P +YP +PPK  F                                    ++ HPNI  N G ICLDIL+ +W+PA T+S  L +I  LL DP P  PL  ++A++ K  D   Y +    +  +Y++
Sbjct:    3 AEKRLLQEYRSILKEQRQKGSASTLSSNGILDLKPVSEDNFYKWTAKLKGPTDTGYQDAFWELQIDIPSNYPTQPPKFTFIVSDDIPRNRRQRQTNQIQDDDEFEGAEKEVLRHCYRMPHPNIAFNTGEICLDILQAKWTPAWTLSSALTAIVLLLNDPEPLSPLDIDMANLMKINDLKAYNSLIEYYVGRYSI 196          
BLAST of DY257855 vs. ExPASy Swiss-Prot
Match: UBC6_ASHGO (Ubiquitin-conjugating enzyme E2 6 OS=Ashbya gossypii GN=UBC6 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.820e-13
Identity = 43/145 (29.66%), Postives = 70/145 (48.28%), Query Frame = 2
Query:   74 SQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSNSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICL---DILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARS 499
            S+ A KR++KE K + ++PP    A P  D++  W   I GP  +P+  G +  ++ FP DYPF PP +   T   +     N  +CL   D   + W+P+ +++ +L  + S +T           I  M  TD  K +  A+S
Sbjct:    3 SRQAYKRLSKEYKMMTENPPPYIVAAPKEDNILVWHYVITGPPETPYEDGQYHGTLVFPNDYPFNPPAIRMLTP--NGRFRENTRLCLSMSDYHPDTWNPSWSVATILTGLLSFMTTDE------SSIGTMESTDSTKRKYAAKS 139          
BLAST of DY257855 vs. ExPASy Swiss-Prot
Match: UBC6_KLULA (Ubiquitin-conjugating enzyme E2 6 OS=Kluyveromyces lactis GN=UBC6 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.907e-13
Identity = 38/116 (32.76%), Postives = 60/116 (51.72%), Query Frame = 2
Query:   74 SQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSNSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICL---DILKEQWSPALTISKVLLSICSLLT 412
            S  A+KR+ KE K++  +PP    A P  D++  W   I GP ++P+  G +  ++ FP DYPF PP +   T   +     N  +CL   D   E W+PA ++  +L  + S +T
Sbjct:    3 SIQANKRLTKEYKNIVNNPPPFIIAAPHEDNILEWHYVITGPPSTPYENGQYHGTLTFPSDYPFNPPAIRMITP--NGRFKENTRLCLSMSDYHPEAWNPAWSVVTILNGLLSFMT 116          
BLAST of DY257855 vs. ExPASy Swiss-Prot
Match: UBC6_DEBHA (Ubiquitin-conjugating enzyme E2 6 OS=Debaryomyces hansenii GN=UBC6 PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.519e-12
Identity = 37/116 (31.90%), Postives = 62/116 (53.45%), Query Frame = 2
Query:   74 SQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSNSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICL---DILKEQWSPALTISKVLLSICSLLT 412
            S+ + KR+ KE K +  +PP   SA P  +++  W   I GP ++PF  G +   + FP +YPFKPP ++  T   +     N  +CL   D   + W+PA +++ +L  + S +T
Sbjct:    3 SRQSQKRLTKEYKAITLNPPPYVSAKPNDENILEWHYVITGPPHTPFEEGQYHGILRFPSEYPFKPPSISMITP--NGRFACNTRLCLSMSDYHPDTWNPAWSVATILTGLLSFMT 116          
BLAST of DY257855 vs. ExPASy Swiss-Prot
Match: UBC6_CANGA (Ubiquitin-conjugating enzyme E2 6 OS=Candida glabrata GN=UBC6 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.421e-12
Identity = 35/116 (30.17%), Postives = 62/116 (53.45%), Query Frame = 2
Query:   74 SQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSNSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICL---DILKEQWSPALTISKVLLSICSLLT 412
            ++ A KR+ KE K + ++PP    A P  +++  W   I GP ++P+ GG +  ++ FP DYP+KPP +   T   +     N  +CL   D   + W+P  +++ +L  + S +T
Sbjct:    3 TKQAQKRLTKEYKMMVENPPPFIIARPNEENILEWHYVISGPPDTPYDGGQYHGTLTFPSDYPYKPPAIRMITP--NGRFKENTRLCLSMSDYHPDTWNPGWSVATILNGLLSFMT 116          
BLAST of DY257855 vs. ExPASy Swiss-Prot
Match: UB2J1_MOUSE (Ubiquitin-conjugating enzyme E2 J1 OS=Mus musculus GN=Ube2j1 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 4.421e-12
Identity = 42/112 (37.50%), Postives = 57/112 (50.89%), Query Frame = 2
Query:   83 ASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSNSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL---KEQWSPALTISKVLLSICSLL 409
            A KR+ KE  +L KDP     A P+ D++F W  T+ GP +S F GGV+   I  PP+YP KPP +   T   +        ICL I     E W P+ +I   LL+I   +
Sbjct:   11 AVKRLMKEAAEL-KDPTDHYHAQPLEDNLFEWHFTVRGPPDSDFDGGVYHGRIVLPPEYPMKPPSIILLTA--NGRFEVGKKICLSISGHHPETWQPSWSIRTALLAIIGFM 119          
The following BLAST results are available for this feature:
BLAST of DY257855 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 267
Match NameE-valueIdentityDescription
UB2FB_MOUSE8.056e-1430.57NEDD8-conjugating enzyme UBE2F-B OS=Mus musculus G... [more]
UBC32_ARATH1.795e-1334.19Ubiquitin carrier protein E2 32 OS=Arabidopsis tha... [more]
UBCX_YEAST2.344e-1333.33Ubiquitin-conjugating enzyme E2-21 kDa OS=Saccharo... [more]
UBC6_YEAST2.344e-1329.85Ubiquitin-conjugating enzyme E2 6 OS=Saccharomyces... [more]
UBCX_PICPA5.222e-1327.84Ubiquitin-conjugating enzyme E2-24 kDa OS=Pichia p... [more]
UBC6_ASHGO6.820e-1329.66Ubiquitin-conjugating enzyme E2 6 OS=Ashbya gossyp... [more]
UBC6_KLULA8.907e-1332.76Ubiquitin-conjugating enzyme E2 6 OS=Kluyveromyces... [more]
UBC6_DEBHA1.519e-1231.90Ubiquitin-conjugating enzyme E2 6 OS=Debaryomyces ... [more]
UBC6_CANGA4.421e-1230.17Ubiquitin-conjugating enzyme E2 6 OS=Candida glabr... [more]
UB2J1_MOUSE4.421e-1237.50Ubiquitin-conjugating enzyme E2 J1 OS=Mus musculus... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1DE01ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257855 ID=DY257855; Name=DY257855; organism=Citrus clementina; type=EST; length=815bp
GCGGGGGACTTTGACTCGCAACGTAAAATAACACCAGACCCAAACTCTCA
GGCCACAAAGTTTGTTGAGAAATTCCCAGATGGCTTCAAAACGGATCAAC
AAGGAGTTGAAGGACCTACAGAAGGACCCTCCTGCTTCTTGTAGCGCTGG
CCCTGTTGCTGATGACATGTTCCATTGGCAAGCAACAATTATGGGCCCAT
CAAACAGCCCATTTGCTGGGGGTGTATTTCTTGTATCCATTCATTTCCCA
CCTGATTATCCATTCAAGCCACCGAAGGTGGCCTTCCGTACTAAGGTTTT
CCACCCTAACATCAACAGCAATGGTAGCATCTGTCTTGACATTCTCAAGG
AGCAGTGGAGCCCTGCTTTGACAATATCCAAGGTACTTCTGTCAATTTGC
TCACTACTTACTGATCCGAACCCAGATGACCCACTTGTGCCTGAGATTGC
TCACATGTACAAGACTGACAGAGCCAAATATGAGACTACTGCTCGATCCT
GGACCCAGAAGTATGCCATGGGTTAAGAGGGGCTAGGCTGTACGCCCCTG
AGAACATTAATGGCTTGTGGTCCTATTAGTAAATAATAGAAATAAGTTTG
TTTCAGATATTAAAAGACGATATTTGGTTTTGTTTACTAAGTTGTTAAAA
GGTTTTATGTGGGGTTACTTTCCAATTTAGCATTGTCCTTCAATACTTAA
ATTATAATTTACTGCAGAATGGAGCTGCCTTTGCCTTTATTTATTGTTGG
TAATGGTCTATTTGAAGGCTTCTAGAATGCGATTTATAGTAATGAACGGA
ACCTCTCCATTCCTG
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