DY257855

Overview
NameDY257855
Unique NameDY257855
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length815
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1037 contig Ccv1_Contig1037:1..815. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257855 vs. ExPASy Swiss-Prot
Match: UB2J1_HUMAN (Ubiquitin-conjugating enzyme E2 J1 OS=Homo sapiens GN=UBE2J1 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 4.421e-12
Identity = 42/112 (37.50%), Postives = 57/112 (50.89%), Query Frame = 2
Query:   83 ASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSNSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL---KEQWSPALTISKVLLSICSLL 409
            A KR+ KE  +L KDP     A P+ D++F W  T+ GP +S F GGV+   I  PP+YP KPP +   T   +        ICL I     E W P+ +I   LL+I   +
Sbjct:   11 AVKRLMKEAAEL-KDPTDHYHAQPLEDNLFEWHFTVRGPPDSDFDGGVYHGRIVLPPEYPMKPPSIILLTA--NGRFEVGKKICLSISGHHPETWQPSWSIRTALLAIIGFM 119          
BLAST of DY257855 vs. ExPASy Swiss-Prot
Match: UB2J2_BOVIN (Ubiquitin-conjugating enzyme E2 J2 OS=Bos taurus GN=UBE2J2 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.194e-11
Identity = 34/125 (27.20%), Postives = 63/125 (50.40%), Query Frame = 2
Query:   59 SLLRNSQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSNSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICL---DILKEQWSPALTISKVLLSICSLLTDPNP 424
            S+ R    A++R+ ++   ++KDP     A P+  ++  W   + GP  +P+ GG +   + FP ++PFKPP +   T   +     N  +CL   D   + W+PA ++S +L  + S + +  P
Sbjct:    5 SVKRAPTTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITP--NGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGP 127          
BLAST of DY257855 vs. ExPASy Swiss-Prot
Match: Y1A1_ENCCU (Probable ubiquitin-conjugating enzyme E2 ECU01_1010 OS=Encephalitozoon cuniculi GN=ECU01_1010 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.865e-11
Identity = 34/116 (29.31%), Postives = 57/116 (49.14%), Query Frame = 2
Query:  176 WQATIMGPSNSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL--------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKY 481
            W        +S +AG +    + FP  YP +PP + F +K+FHPNI  +G +C+ IL              K++W+P   I  +++SI  +L  PN   P   + + MY+ +  +Y
Sbjct:   68 WDIYFTLGGDSLYAGRILKAVMKFPSSYPLRPPTLKFVSKMFHPNIYEDGKMCISILEEDKQQDSSVFGDPKDKWTPVQNIRTIVMSIVVILNSPNISSPANVDASVMYRDNPEEY 183          
BLAST of DY257855 vs. ExPASy Swiss-Prot
Match: UBC12_CAEEL (NEDD8-conjugating enzyme ubc-12 OS=Caenorhabditis elegans GN=ubc-12 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.865e-11
Identity = 39/113 (34.51%), Postives = 57/113 (50.44%), Query Frame = 2
Query:  197 PSNSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ------WSPALTISKVLLSICSLLTD-PNPDDPLVPEIAHMYKTDRAKYETTARSWTQKY 514
            P    + GG F   I  PP+Y   PP V   TKV+HPNIN +GSICL IL++       W P   ++ V+  + SL  D  + +D L  + A M+  +R  +    R +  +Y
Sbjct:   67 PQEGIYRGGKFRFKITVPPEYNNVPPVVKCLTKVWHPNINEDGSICLSILRQNSLDQYGWRPTRNLTDVVHGLVSLFNDLMDFNDALNIQAAQMWSQNRESFNHRVREYISRY 179          
BLAST of DY257855 vs. ExPASy Swiss-Prot
Match: UBC17_CAEEL (Probable ubiquitin-conjugating enzyme protein 17 OS=Caenorhabditis elegans GN=ubc-17 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.742e-11
Identity = 46/120 (38.33%), Postives = 66/120 (55.00%), Query Frame = 2
Query:   86 SKRINKELKDLQKDPP--ASCSAGPVADD--MFHWQATIMGPSNSPFAGGVFLVSIHFPPDYPFKPPKVAFRTK-----VFHPNINSNGSICLDIL-------KEQWSPALTISKVLLSI 397
            +KRI KEL  +    P  AS S     D+  +   +  I GP ++P+A G+F   I FP  YPF PPK AF T       F+PN+ ++G ICL IL       +E+W+P  ++ +VL+SI
Sbjct:  411 TKRIAKELASIANALPLNASNSIYVCYDEGRVDIIKVLISGPDDTPYANGLFEFDIFFPTGYPFSPPKCAFLTTGSGNVRFNPNLYNDGKICLSILGTWEGRPEEKWNPYCSLMQVLVSI 530          
BLAST of DY257855 vs. ExPASy Swiss-Prot
Match: UB2J2_MOUSE (Ubiquitin-conjugating enzyme E2 J2 OS=Mus musculus GN=Ube2j2 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.888e-11
Identity = 32/117 (27.35%), Postives = 60/117 (51.28%), Query Frame = 2
Query:   83 ASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSNSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICL---DILKEQWSPALTISKVLLSICSLLTDPNP 424
            A++R+ ++   ++KDP     A P+  ++  W   + GP  +P+ GG +   + FP ++PFKPP +   T   +     N  +CL   D   + W+PA ++S +L  + S + +  P
Sbjct:   13 ATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITP--NGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGP 127          
BLAST of DY257855 vs. ExPASy Swiss-Prot
Match: UB2J2_HUMAN (Ubiquitin-conjugating enzyme E2 J2 OS=Homo sapiens GN=UBE2J2 PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 4.888e-11
Identity = 32/117 (27.35%), Postives = 60/117 (51.28%), Query Frame = 2
Query:   83 ASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSNSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICL---DILKEQWSPALTISKVLLSICSLLTDPNP 424
            A++R+ ++   ++KDP     A P+  ++  W   + GP  +P+ GG +   + FP ++PFKPP +   T   +     N  +CL   D   + W+PA ++S +L  + S + +  P
Sbjct:   13 ATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITP--NGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGP 127          
The following BLAST results are available for this feature:
BLAST of DY257855 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 267
Match NameE-valueIdentityDescription
UB2J1_HUMAN4.421e-1237.50Ubiquitin-conjugating enzyme E2 J1 OS=Homo sapiens... [more]
UB2J2_BOVIN2.194e-1127.20Ubiquitin-conjugating enzyme E2 J2 OS=Bos taurus G... [more]
Y1A1_ENCCU2.865e-1129.31Probable ubiquitin-conjugating enzyme E2 ECU01_101... [more]
UBC12_CAEEL2.865e-1134.51NEDD8-conjugating enzyme ubc-12 OS=Caenorhabditis ... [more]
UBC17_CAEEL3.742e-1138.33Probable ubiquitin-conjugating enzyme protein 17 O... [more]
UB2J2_MOUSE4.888e-1127.35Ubiquitin-conjugating enzyme E2 J2 OS=Mus musculus... [more]
UB2J2_HUMAN4.888e-1127.35Ubiquitin-conjugating enzyme E2 J2 OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1DE01ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257855 ID=DY257855; Name=DY257855; organism=Citrus clementina; type=EST; length=815bp
GCGGGGGACTTTGACTCGCAACGTAAAATAACACCAGACCCAAACTCTCA
GGCCACAAAGTTTGTTGAGAAATTCCCAGATGGCTTCAAAACGGATCAAC
AAGGAGTTGAAGGACCTACAGAAGGACCCTCCTGCTTCTTGTAGCGCTGG
CCCTGTTGCTGATGACATGTTCCATTGGCAAGCAACAATTATGGGCCCAT
CAAACAGCCCATTTGCTGGGGGTGTATTTCTTGTATCCATTCATTTCCCA
CCTGATTATCCATTCAAGCCACCGAAGGTGGCCTTCCGTACTAAGGTTTT
CCACCCTAACATCAACAGCAATGGTAGCATCTGTCTTGACATTCTCAAGG
AGCAGTGGAGCCCTGCTTTGACAATATCCAAGGTACTTCTGTCAATTTGC
TCACTACTTACTGATCCGAACCCAGATGACCCACTTGTGCCTGAGATTGC
TCACATGTACAAGACTGACAGAGCCAAATATGAGACTACTGCTCGATCCT
GGACCCAGAAGTATGCCATGGGTTAAGAGGGGCTAGGCTGTACGCCCCTG
AGAACATTAATGGCTTGTGGTCCTATTAGTAAATAATAGAAATAAGTTTG
TTTCAGATATTAAAAGACGATATTTGGTTTTGTTTACTAAGTTGTTAAAA
GGTTTTATGTGGGGTTACTTTCCAATTTAGCATTGTCCTTCAATACTTAA
ATTATAATTTACTGCAGAATGGAGCTGCCTTTGCCTTTATTTATTGTTGG
TAATGGTCTATTTGAAGGCTTCTAGAATGCGATTTATAGTAATGAACGGA
ACCTCTCCATTCCTG
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