DY257858

Overview
NameDY257858
Unique NameDY257858
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length349
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9507 contig Ccv1_Contig9507:734..1082. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257858 vs. ExPASy Swiss-Prot
Match: CHI1_ORYSJ (Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht1 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.683e-15
Identity = 31/55 (56.36%), Postives = 41/55 (74.55%), Query Frame = 1
Query:    1 LPGYGLTTNIINGGIECGQGCNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPF 165
            +PGYG+ TNIINGG+ECG G +  V +RIGF+  +C   G+  G NLDCY+Q+PF
Sbjct:  267 VPGYGVVTNIINGGVECGHGADSRVADRIGFYKRYCDMLGVSYGANLDCYNQRPF 321          
BLAST of DY257858 vs. ExPASy Swiss-Prot
Match: CHI1_SOLTU (Endochitinase 1 (Fragment) OS=Solanum tuberosum GN=CHTB1 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.134e-14
Identity = 33/64 (51.56%), Postives = 47/64 (73.44%), Query Frame = 1
Query:    1 LPGYGLTTNIINGGIECGQGCNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFGLILMARSM 192
            +PG+G+ TNIINGG+ECG G +  V++RIGF+  +CG  G+ PG NLDC +Q+ FG  L+  +M
Sbjct:  255 VPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGNQRSFGNGLLVDTM 318          
BLAST of DY257858 vs. ExPASy Swiss-Prot
Match: CHIC_SOLLC (Basic 30 kDa endochitinase OS=Solanum lycopersicum GN=CHI9 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.934e-14
Identity = 31/56 (55.36%), Postives = 43/56 (76.79%), Query Frame = 1
Query:    1 LPGYGLTTNIINGGIECGQGCNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFG 168
            +PG+G+ TNIINGG+ECG G +  V++RIGF+  +CG  G+ PG NLDC +Q+ FG
Sbjct:  259 VPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGENLDCGNQRSFG 314          
BLAST of DY257858 vs. ExPASy Swiss-Prot
Match: CHI3_ORYSJ (Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht3 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 1.934e-14
Identity = 31/55 (56.36%), Postives = 41/55 (74.55%), Query Frame = 1
Query:    1 LPGYGLTTNIINGGIECGQGCNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPF 165
            +PGYG  TNIINGG+ECG G +D V +RIGF+  +C   G+  G NLDCY+Q+P+
Sbjct:  263 VPGYGEITNIINGGVECGHGADDKVADRIGFYKRYCDMLGVSYGDNLDCYNQRPY 317          
BLAST of DY257858 vs. ExPASy Swiss-Prot
Match: CHI2_TOBAC (Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.934e-14
Identity = 33/64 (51.56%), Postives = 47/64 (73.44%), Query Frame = 1
Query:    1 LPGYGLTTNIINGGIECGQGCNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFGLILMARSM 192
            LPG+G+ TNIINGG+ECG+G +  V++RIGF+  +C   G+ PG NLDC +Q+ FG  L+  +M
Sbjct:  261 LPGFGVITNIINGGLECGRGTDSRVQDRIGFYRRYCSILGVSPGDNLDCGNQRSFGNGLLVDTM 324          
BLAST of DY257858 vs. ExPASy Swiss-Prot
Match: CHI1_TOBAC (Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 1.934e-14
Identity = 33/64 (51.56%), Postives = 47/64 (73.44%), Query Frame = 1
Query:    1 LPGYGLTTNIINGGIECGQGCNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFGLILMARSM 192
            LPG+G+ TNIINGG+ECG+G +  V++RIGF+  +C   G+ PG NLDC +Q+ FG  L+  +M
Sbjct:  266 LPGFGVITNIINGGLECGRGTDSRVQDRIGFYRRYCSILGVSPGDNLDCGNQRSFGNGLLVDTM 329          
BLAST of DY257858 vs. ExPASy Swiss-Prot
Match: CHIT_SOLTU (Endochitinase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.526e-14
Identity = 32/64 (50.00%), Postives = 48/64 (75.00%), Query Frame = 1
Query:    1 LPGYGLTTNIINGGIECGQGCNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFGLILMARSM 192
            LPG+G+ TNIINGG+ECG+G ++ V++RIGF+  +C   G+ PG NLDC +Q+ FG  L+  ++
Sbjct:  265 LPGFGVITNIINGGLECGRGTDNRVQDRIGFYRRYCSILGVTPGDNLDCVNQRWFGNALLVDTL 328          
BLAST of DY257858 vs. ExPASy Swiss-Prot
Match: CHI3_SOLTU (Endochitinase 3 (Fragment) OS=Solanum tuberosum GN=CHTB3 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.526e-14
Identity = 31/56 (55.36%), Postives = 43/56 (76.79%), Query Frame = 1
Query:    1 LPGYGLTTNIINGGIECGQGCNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFG 168
            +PG+G+ TNIINGG+ECG G +  V++RIGF+  +CG  G+ PG NLDC +Q+ FG
Sbjct:  255 VPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGNQRSFG 310          
BLAST of DY257858 vs. ExPASy Swiss-Prot
Match: CHI2_SOLTU (Endochitinase 2 (Fragment) OS=Solanum tuberosum GN=CHTB2 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.526e-14
Identity = 31/56 (55.36%), Postives = 43/56 (76.79%), Query Frame = 1
Query:    1 LPGYGLTTNIINGGIECGQGCNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFG 168
            +PG+G+ TNIINGG+ECG G +  V++RIGF+  +CG  G+ PG NLDC +Q+ FG
Sbjct:  253 VPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGNQRSFG 308          
BLAST of DY257858 vs. ExPASy Swiss-Prot
Match: CHI2_GOSHI (Endochitinase 2 (Fragment) OS=Gossypium hirsutum PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 2.526e-14
Identity = 32/54 (59.26%), Postives = 40/54 (74.07%), Query Frame = 1
Query:    7 GYGLTTNIINGGIECGQGCNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFG 168
            GYG+ TNIINGG+ECG+G N  V +RIGF+  +C   G+  G NLDCY+Q PFG
Sbjct:  241 GYGVITNIINGGLECGKGWNAQVEDRIGFYKRYCDILGVSYGNNLDCYNQSPFG 294          
The following BLAST results are available for this feature:
BLAST of DY257858 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
CHI1_ORYSJ8.683e-1556.36Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI1_SOLTU1.134e-1451.56Endochitinase 1 (Fragment) OS=Solanum tuberosum GN... [more]
CHIC_SOLLC1.934e-1455.36Basic 30 kDa endochitinase OS=Solanum lycopersicum... [more]
CHI3_ORYSJ1.934e-1456.36Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI2_TOBAC1.934e-1451.56Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1... [more]
CHI1_TOBAC1.934e-1451.56Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1... [more]
CHIT_SOLTU2.526e-1450.00Endochitinase OS=Solanum tuberosum PE=2 SV=1[more]
CHI3_SOLTU2.526e-1455.36Endochitinase 3 (Fragment) OS=Solanum tuberosum GN... [more]
CHI2_SOLTU2.526e-1455.36Endochitinase 2 (Fragment) OS=Solanum tuberosum GN... [more]
CHI2_GOSHI2.526e-1459.26Endochitinase 2 (Fragment) OS=Gossypium hirsutum P... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1DE08ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257858 ID=DY257858; Name=DY257858; organism=Citrus clementina; type=EST; length=349bp
CTTCCGGGATACGGTCTAACTACAAATATAATCAACGGTGGAATTGAATG
TGGCCAAGGTTGTAATGACGCTGTACGTAACCGTATTGGGTTCTTTAGCA
CTTTCTGTGGCAAGTTTGGGATTCAGCCTGGTTACAATCTTGATTGCTAC
CACCAACAGCCTTTTGGCCTTATTCTGATGGCACGATCTATGTGATCATC
ATGATCAACGTTTTAGTAAAATAAGCTTAATAAAAGCTACTTAATAAAAA
CTTTAGATGTCACACTTGTAGGTGGACAACTAAGTTGTTACGCTCTTATT
GTAAATAAATTAAATAAGACTGATCCAACATGGATCAATGAGTCTTCTC
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