DY257861

Overview
NameDY257861
Unique NameDY257861
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5224 contig Ccv1_Contig5224:376..1067. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257861 vs. ExPASy Swiss-Prot
Match: CHIT_PETHY (Acidic endochitinase OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.625e-41
Identity = 84/163 (51.53%), Postives = 102/163 (62.58%), Query Frame = 3
Query:   15 GEYAWGYCFISEVSPPSDYCDPNYPCRGKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPY 503
            G YA GYCF+ E +   +           YYGRGPIQL+   NY              NNPDL+ATD  +SFK+AIWFWMT Q  KPSCH+VI   W PSA D +A R+PGYG+ TNIINGGIECG+G NA V +RIG++        + PGD+LDCYNQR +
Sbjct:  101 GPYAGGYCFLREGNQMGN----------GYYGRGPIQLTGQSNY--DLAGKAIEQDLVNNPDLVATDATVSFKTAIWFWMTPQGNKPSCHDVITGRWTPSAADTSANRVPGYGVITNIINGGIECGKGQNARVEDRIGYYRRNVSIMNVAPGDNLDCYNQRNF 251          
BLAST of DY257861 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSJ (Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.219e-38
Identity = 77/177 (43.50%), Postives = 111/177 (62.71%), Query Frame = 3
Query:   12 GGEYAWGYCFISEVSPPSDYCDPN--YPCR-GK-YYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPP-KPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPYGLNLMAQS 527
            GG Y+WGYC+       SD+C PN  +PC  GK Y+ RGP+Q+++NYNY               NP+L+ATDP ++FK+A+W WMTA+ P +PS H V+  +W P+  D  AGR PGYGLTTNI+ GG++C  G   A  +R+ F+  +C   G+  G +LDC+ Q P+  ++M+ S
Sbjct:  165 GGPYSWGYCYKEVKGATSDFCVPNARWPCAPGKAYHARGPMQIAYNYNYGAAGEAIGADLL--GNPELVATDPTVAFKTALWLWMTARSPSQPSPHAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQCAGGNGGA--DRVAFYKRYCDVLGVGYGPNLDCFGQAPFDGDIMSAS 337          
BLAST of DY257861 vs. ExPASy Swiss-Prot
Match: CHIB_POPTR (Acidic endochitinase WIN6.2B OS=Populus trichocarpa PE=2 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 1.592e-38
Identity = 79/171 (46.20%), Postives = 96/171 (56.14%), Query Frame = 3
Query:    9 RGGEYAWGYCFISEVSPPSDYCDPNYPCRGKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGG-NAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPYGLNLM 518
            +G +Y WGYC +                              NYNY  C             P+L+ TDP ++FK+A+WFWMT Q PKPSCH VI + W PSA D  AGR+PGYG+ TNIINGGIECGQGG N A  NRIGF+ T+C   G   G +LDCY QRP+G  L+
Sbjct:  159 QGDQYDWGYCHM------------------------------NYNYGLCGDDLNLPLL--QEPELVETDPFIAFKTALWFWMTPQSPKPSCHAVITESWTPSAADSEAGRVPGYGVITNIINGGIECGQGGPNNANENRIGFYKTYCDSLGTTYGSNLDCYQQRPFGYGLL 297          
BLAST of DY257861 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSI (Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.592e-38
Identity = 77/177 (43.50%), Postives = 110/177 (62.15%), Query Frame = 3
Query:   12 GGEYAWGYCFISEVSPPSDYCDPN--YPCR-GK-YYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPP-KPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPYGLNLMAQS 527
            GG Y+WGYC+       SD+C PN  +PC  GK Y+ RGP+Q+++NYNY               NP+L+ATDP ++FK+A+W WMTA+ P +PS H V+  +W P+  D  AGR PGYGLTTNI+ GG++C  G   A  +R+ F+  +C   G+  G +LDC+ Q P+   +M+ S
Sbjct:  165 GGPYSWGYCYKEVKGATSDFCVPNARWPCAPGKAYHARGPMQIAYNYNYGAAGEAIGADLL--GNPELVATDPTVAFKTALWLWMTARSPSQPSPHAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQCAGGNGGA--DRVAFYKRYCDVLGVGYGPNLDCFGQAPFDGGIMSAS 337          
BLAST of DY257861 vs. ExPASy Swiss-Prot
Match: CHIT_AVESA (Endochitinase (Fragments) OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.042e-34
Identity = 66/134 (49.25%), Postives = 88/134 (65.67%), Query Frame = 3
Query:  102 YYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDCYNQRPY 503
            Y+GRGPIQ+S+NYNY               NPDL+ +D  + FK+A+WFWMT Q PKPS H+VI   W PS+ D  AGR+PGYG+ TNII+GG+ECG+G  + V +RIG++            D+LDCYNQ+P+
Sbjct:   79 YFGRGPIQISYNYNYGAAGKAIGVDLL--RNPDLVTSDNTVEFKTALWFWMTPQSPKPSSHDVITGRWSPSSTDKAAGRVPGYGVLTNIIDGGVECGKGQESHVADRIGYYK-----------DNLDCYNQKPF 199          
BLAST of DY257861 vs. ExPASy Swiss-Prot
Match: CHI5_ORYSJ (Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht5 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.808e-24
Identity = 59/156 (37.82%), Postives = 83/156 (53.21%), Query Frame = 3
Query:   36 CFISEVSPPS-DYCDPN---YPCRG--KYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDC 485
            C+I+E++  S DYCD N   +PC+   KYYGRGP+Q+SWNYNY               +PD +A DP +SFK+A+WFWM                     N+V+   L G+G T   ING +EC      AV  R+ ++  +C +FG+ PG +L C
Sbjct:  156 CYINEINGASMDYCDKNNKQWPCQPGKKYYGRGPLQISWNYNY--GPAGQNIGFDGLRDPDRVAQDPTISFKTALWFWM---------------------NNVHQVMLQGFGATIRAINGALECNGKNPGAVNARVNYYKDYCRQFGVDPGGNLYC 288          
BLAST of DY257861 vs. ExPASy Swiss-Prot
Match: CHI4_BRANA (Basic endochitinase CHB4 OS=Brassica napus PE=1 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 9.379e-23
Identity = 58/157 (36.94%), Postives = 87/157 (55.41%), Query Frame = 3
Query:   33 YCFISEVSPPS-DYCDPN---YPCR-GK-YYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDC 485
            +C+I E++  S DYCD N   YPC  GK Y+GRGPIQLSWNYNY  C             P+L++++P ++F++ +WFWM +  P       ++++              G+G T   ING +EC  G + AV  RI ++  +CG+ G+ PG +L C
Sbjct:  136 FCYIEEINGASRDYCDENNRQYPCAPGKGYFGRGPIQLSWNYNYGACGQSLNLNLL--GQPELVSSNPTVAFRTGLWFWMNSVRP-------VLNQ--------------GFGATIRAING-MECNGGNSGAVNARIRYYRDYCGQLGVDPGPNLSC 268          
BLAST of DY257861 vs. ExPASy Swiss-Prot
Match: CHIB_MAIZE (Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.655e-22
Identity = 54/156 (34.62%), Postives = 80/156 (51.28%), Query Frame = 3
Query:   33 YCFISEVSPPSDYCDPN---YPCRG--KYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDC 485
            +C+ISE++  + YCDP    +PC    KYYGRGP+Q+SWNYNY               +P  +A D V++FK+A+WFWM       S H V+                 G+G TT  +   +ECG    A +  R+G++  +C + G+ PG +L C
Sbjct:  137 FCYISEINKSNAYCDPTKRQWPCAAGQKYYGRGPLQISWNYNY--GPAGRAIGFDGLGDPGRVARDAVVAFKAALWFWMN------SVHGVVPQ---------------GFGATTRAMQRALECGGNNPAQMNARVGYYRQYCRQLGVDPGPNLTC 269          
BLAST of DY257861 vs. ExPASy Swiss-Prot
Match: CHI4_ORYSJ (Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 4.655e-22
Identity = 55/156 (35.26%), Postives = 82/156 (52.56%), Query Frame = 3
Query:   36 CFISEVSPPS-DYCDPN---YPCRG--KYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDC 485
            C+I+E++  + DYCD +   +PC+   KYYGRGP+Q+SWN+NY               +PD +A DP +SFK+A+WFWM                     N+V+     G+G T   ING +EC      AV  R+ ++  +C +FG+ PG +L C
Sbjct:  153 CYINEINGANMDYCDKSNKQWPCQPGKKYYGRGPLQISWNFNY--GPAGKNIGFDGLRDPDKVAQDPTISFKTALWFWM---------------------NNVHQVMSQGFGATIRAINGALECNGKNPGAVNARVNYYKDYCRQFGVSPGGNLYC 285          
BLAST of DY257861 vs. ExPASy Swiss-Prot
Match: CHIT_DIOJA (Acidic endochitinase OS=Dioscorea japonica PE=1 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.037e-21
Identity = 54/155 (34.84%), Postives = 84/155 (54.19%), Query Frame = 3
Query:   36 CFISEVSP-PSDYCDPN--YPCRG--KYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDC 485
            C+I E     ++YC  +  YPC    +Y+GRGP+QLSWNYNY+             N+PD++  DP++SFK+++WFW+     +     VI+D  +            G+G T  IINGG EC     A +  R+G++  +C + G+ PG++L C
Sbjct:  115 CYIEERDGHANNYCQESQQYPCNPNKEYFGRGPMQLSWNYNYIDAGKELHFDGL--NDPDIVGRDPIISFKTSLWFWI-----RKGVQYVILDPNQ------------GFGATIRIINGGQECDGHNTAQMMARVGYYQEYCAQLGVSPGNNLPC 250          
The following BLAST results are available for this feature:
BLAST of DY257861 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHIT_PETHY2.625e-4151.53Acidic endochitinase OS=Petunia hybrida PE=2 SV=1[more]
CHI7_ORYSJ1.219e-3843.50Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIB_POPTR1.592e-3846.20Acidic endochitinase WIN6.2B OS=Populus trichocarp... [more]
CHI7_ORYSI1.592e-3843.50Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 ... [more]
CHIT_AVESA9.042e-3449.25Endochitinase (Fragments) OS=Avena sativa PE=1 SV=... [more]
CHI5_ORYSJ3.808e-2437.82Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_BRANA9.379e-2336.94Basic endochitinase CHB4 OS=Brassica napus PE=1 SV... [more]
CHIB_MAIZE4.655e-2234.62Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1[more]
CHI4_ORYSJ4.655e-2235.26Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIT_DIOJA1.037e-2134.84Acidic endochitinase OS=Dioscorea japonica PE=1 SV... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1DF01ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257861 ID=DY257861; Name=DY257861; organism=Citrus clementina; type=EST; length=692bp
GGATGCACCGTGGTGGCGAATATGCTTGGGGATATTGCTTTATAAGCGAA
GTTAGCCCTCCGTCCGACTACTGTGATCCTAACTATCCATGTCGAGGGAA
GTACTATGGCCGAGGTCCAATTCAACTCTCTTGGAATTACAATTACTTAC
GGTGCGGAGAAGGCCTAGGGCTAGGAGAGGAGTTGTTGAACAATCCAGAC
CTTCTTGCTACTGATCCAGTACTATCATTCAAGTCAGCAATCTGGTTCTG
GATGACTGCACAGCCACCAAAGCCATCGTGCCACGAAGTCATTATCGACG
AATGGAAACCATCAGCAAATGACGTAAACGCCGGCCGGCTTCCGGGATAC
GGTCTAACCACAAATATAATCAACGGTGGAATTGAATGTGGCCAAGGTGG
GAATGCCGCTGTACGTAACCGTATTGGGTTCTTTACCACTTTCTGTGGCA
AGTTTGGGATTCAGCCTGGTGACAGTCTTGATTGCTACAACCAACGACCT
TATGGCCTTAATCTGATGGCACAATCTATGTGATCATCATGATCAACGTT
TTAGTAAAATAAGCTTAATAAAAGCTACTTAATAAAAACTTTAGATGTCA
CACTTGTAGGTGGACAACTAAATTGTTAGTTTGTTACGCTCTTATTGTAA
GTAAATTAAATAAGACTGATCCAACATGGATCAATGAGTCTT
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