DY257862

Overview
NameDY257862
Unique NameDY257862
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length995
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257862 vs. ExPASy Swiss-Prot
Match: AGL8_SOLTU (Agamous-like MADS-box protein AGL8 homolog OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 6.587e-43
Identity = 92/172 (53.49%), Postives = 126/172 (73.26%), Query Frame = 2
Query:    5 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR 520
            MGRGRV+LKRIENKINRQVTF+KRR+GLLKKA+E+SVLCDAEV LI+FS +GKL+E+ + S M + LERY++ ++ A    V        S   E+ KLKAR E LQR+Q++ +GE+L  LN KEL++LE QLD +LK IRS + Q M ++++ LQ +++ L E N  L ++
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYANDSCMERLLERYERYSF-AERQLVPTDHTSPGSWTLEHAKLKARLEVLQRNQKHYVGEDLESLNMKELQNLEHQLDSALKHIRSRKNQLMHESISVLQKQDRALQEQNNQLSKK 171          
BLAST of DY257862 vs. ExPASy Swiss-Prot
Match: AGL8_ARATH (Agamous-like MADS-box protein AGL8 OS=Arabidopsis thaliana GN=AGL8 PE=1 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 6.587e-43
Identity = 93/175 (53.14%), Postives = 130/175 (74.29%), Query Frame = 2
Query:    5 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPE---PNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR 520
            MGRGRV+LKRIENKINRQVTF+KRR+GLLKKA+E+SVLCDAEVALI+FS++GKL+E+ + S M + LERY +  Y   +    +VS  E   L    E+ KLKAR E L++++RN +GE+L  L+ KEL+SLE QLD ++K IRS + Q M ++++ LQ K++ L + N +L ++
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSSKGKLFEYSTDSCMERILERYDRYLYSDKQLVGRDVSQSENWVL----EHAKLKARVEVLEKNKRNFMGEDLDSLSLKELQSLEHQLDAAIKSIRSRKNQAMFESISALQKKDKALQDHNNSLLKK 171          
BLAST of DY257862 vs. ExPASy Swiss-Prot
Match: AGL8_SINAL (Agamous-like MADS-box protein AGL8 homolog OS=Sinapis alba GN=AGL8 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 1.124e-42
Identity = 96/192 (50.00%), Postives = 135/192 (70.31%), Query Frame = 2
Query:    5 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPE---PNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEAN----KTLKQRTMTLRHADFAGLQ 559
            MGRGRV+LKRIENKINRQVTF+KRR+GLLKKA+E+SVLCDAEVAL+IFS++GKL+E+ + S M K LERY +  Y   +    ++S  E   L    E+ KLKAR E L++++RN +GE+L  L+ KEL+SLE QL  ++K IRS + Q M ++++ LQ K+++L + N    K +K+R     H +   +Q
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALVIFSSKGKLFEYSTDSCMEKILERYDRYLYSDKQLVGRDISQSENWVL----EHAKLKARVEVLEKNKRNFMGEDLDSLSLKELQSLEHQLHAAIKSIRSRKNQAMFESISALQKKDKVLQDHNNALLKKIKEREKNTVHQEVQLIQ 188          
BLAST of DY257862 vs. ExPASy Swiss-Prot
Match: AGL13_ARATH (Agamous-like MADS-box protein AGL13 OS=Arabidopsis thaliana GN=AGL13 PE=2 SV=2)

HSP 1 Score: 173.326 bits (438), Expect = 1.916e-42
Identity = 98/187 (52.41%), Postives = 132/187 (70.59%), Query Frame = 2
Query:    5 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSS--QQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHADFAGLQ 559
            MGRG+VE+KRIENKI RQVTF+KR++GLLKKAYELSVLCDAEV+LIIFS  GKLYEF S+  + +T+ERY +C     + N+   + LE +   +QE  KLK +YE+L R+ RNL+GE+L  ++ KEL++LERQL+ +L   R  +TQ M++ + EL+ KE+ L + N  LK  T      DF G Q
Sbjct:    1 MGRGKVEVKRIENKITRQVTFSKRKSGLLKKAYELSVLCDAEVSLIIFSTGGKLYEF-SNVGVGRTIERYYRC-----KDNLLDNDTLEDTQGLRQEVTKLKCKYESLLRTHRNLVGEDLEGMSIKELQTLERQLEGALSATRKQKTQVMMEQMEELRRKERELGDINNKLKLET---EDHDFKGFQ 178          
BLAST of DY257862 vs. ExPASy Swiss-Prot
Match: AGL8_SOLCO (Agamous-like MADS-box protein AGL8 homolog OS=Solanum commersonii GN=SCM1 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 8.052e-41
Identity = 90/172 (52.33%), Postives = 124/172 (72.09%), Query Frame = 2
Query:    5 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR 520
            MGRGRV+LKRIENKINRQVTF+KRR+GLLKKA+E+SVLCDAEV LI+FS +GKL+E+ + S M + LERY++ ++ A +  V        S   E  KLKAR E LQR+++  +GE+L  LN KEL++LE QL  +LK IRS + Q M ++++ LQ +++ L E N  L ++
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYATDSCMERLLERYERYSF-AEKQLVPTDHTSPGSWTLENAKLKARLEVLQRNEKLYVGEDLESLNMKELQNLEHQLASALKHIRSRKNQLMHESISVLQKQDRALQEQNNQLSKK 171          
BLAST of DY257862 vs. ExPASy Swiss-Prot
Match: MAD21_ORYSJ (MADS-box transcription factor 21 OS=Oryza sativa subsp. japonica GN=MADS21 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 3.996e-40
Identity = 98/250 (39.20%), Postives = 147/250 (58.80%), Query Frame = 2
Query:    5 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNY----GAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHADFAGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFHALECEPT---LQIGYQPADPISVVTA 733
            MGRG++E+KRIENK +RQVTF KRRNGLLKKAYEL++LCDAE+ALI+FS+RG+LYEF + +S   T+ERY+K +      AP  +V++ +      QQE  K++ + + LQ + R+L+GE +G + +KEL+SLE +L+  + +IRS + + +   +  +Q +E  L   N  L+ +      A+    Q              +AED      PA   G +    LE  P     +  YQPA P+S++ A
Sbjct:    1 MGRGKIEIKRIENKTSRQVTFCKRRNGLLKKAYELAILCDAEIALIVFSSRGRLYEFSNVNSTRSTIERYKKASASTSGSAPVIDVNSHQYF----QQEAAKMRHQIQTLQNANRHLIGESIGNMTAKELKSLENRLEKGISRIRSKKHELLFSEIEYMQKREADLQNENMFLRAKVAEAERAEHDDQQ--------------AAEDDEMAPAPAVGGGSSSGTELEALPATFDTREYYQPAPPVSMLAA 232          
BLAST of DY257862 vs. ExPASy Swiss-Prot
Match: AGL1_ARATH (Agamous-like MADS-box protein AGL1 OS=Arabidopsis thaliana GN=AGL1 PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 6.380e-38
Identity = 85/173 (49.13%), Postives = 120/173 (69.36%), Query Frame = 2
Query:    2 KMGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR 520
            K+GRG++E+KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEVAL+IFS RG+LYE+ +++S+  T+ERY+K    A  P  S  EA     QQE  KL+ +   +Q S R+++GE LG LN KEL++LE +L+  + ++RS + + ++  +  +Q +E  L   N  L+ +
Sbjct:   15 KLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEY-ANNSVRGTIERYKKACSDAVNP-PSVTEANTQYYQQEASKLRRQIRDIQNSNRHIVGESLGSLNFKELKNLEGRLEKGISRVRSKKNELLVAEIEYMQKREMELQHNNMYLRAK 185          
BLAST of DY257862 vs. ExPASy Swiss-Prot
Match: AG_PANGI (Floral homeotic protein AGAMOUS OS=Panax ginseng GN=AG2 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.856e-37
Identity = 83/173 (47.98%), Postives = 120/173 (69.36%), Query Frame = 2
Query:    2 KMGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR 520
            K+GRG++E+KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FS RG+LYE+ +++S+  T+ERY+K    +P  + S  EA     QQE  KL+    ++Q++ RN++GE LG L  ++L+ LE +L+  + +IRS + + +   +  +Q KE  L   N+ L+ +
Sbjct:   16 KLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEY-ANNSVKGTIERYKKACTDSPNTS-SVSEANAQFYQQEASKLRQEISSIQKNNRNMMGESLGSLTVRDLKGLETKLEKGISRIRSKKNELLFAEIEYMQKKEIDLHNNNQYLRAK 186          
BLAST of DY257862 vs. ExPASy Swiss-Prot
Match: AG_SOLLC (Floral homeotic protein AGAMOUS OS=Solanum lycopersicum GN=AG1 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 3.166e-37
Identity = 92/219 (42.01%), Postives = 135/219 (61.64%), Query Frame = 2
Query:    2 KMGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQK-CNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHADFAGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDT 655
            K+GRG++E+KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEVAL++FSNRG+LYE+ +++S+  T+ERY+K C+  +   +VS  EA     QQE  KL+A+   L    RN++GE L  +  KEL++LE++++  + +IRS + + +   +  +Q +E  L   N+ L+ +      A          +Q   + L P +    + L P   Q DT
Sbjct:   16 KLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSNRGRLYEY-ANNSVKATIERYKKACSDSSNTGSVS--EANAQYYQQEASKLRAQIGNLMNQNRNMMGEALAGMKLKELKNLEQRIEKGISKIRSKKNELLFAEIEYMQKREVDLHNNNQYLRAKIAETERAQ---------HQHQQMNLMPGSSSNYHELVPPPQQFDT 222          
BLAST of DY257862 vs. ExPASy Swiss-Prot
Match: AGL11_ARATH (Agamous-like MADS-box protein AGL11 OS=Arabidopsis thaliana GN=AGL11 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 3.166e-37
Identity = 83/196 (42.35%), Postives = 128/196 (65.31%), Query Frame = 2
Query:    5 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHADFAGLQLMEGYQVNTLQ 592
            MGRG++E+KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FS RG+LYE+ +++++  T+ERY+K    +   + + +E      QQE  KL+ + + +Q S RNL+G+ L  L+ KEL+ +E +L+ ++ +IRS + + +L  +   Q +E  L   N  L+ +   +        Q++ G ++N ++
Sbjct:    1 MGRGKIEIKRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEY-ANNNIRSTIERYKKACSDSTNTS-TVQEINAAYYQQESAKLRQQIQTIQNSNRNLMGDSLSSLSVKELKQVENRLEKAISRIRSKKHELLLVEIENAQKREIELDNENIYLRTKVAEVERYQQHHHQMVSGSEINAIE 194          
The following BLAST results are available for this feature:
BLAST of DY257862 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
AGL8_SOLTU6.587e-4353.49Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]
AGL8_ARATH6.587e-4353.14Agamous-like MADS-box protein AGL8 OS=Arabidopsis ... [more]
AGL8_SINAL1.124e-4250.00Agamous-like MADS-box protein AGL8 homolog OS=Sina... [more]
AGL13_ARATH1.916e-4252.41Agamous-like MADS-box protein AGL13 OS=Arabidopsis... [more]
AGL8_SOLCO8.052e-4152.33Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]
MAD21_ORYSJ3.996e-4039.20MADS-box transcription factor 21 OS=Oryza sativa s... [more]
AGL1_ARATH6.380e-3849.13Agamous-like MADS-box protein AGL1 OS=Arabidopsis ... [more]
AG_PANGI1.856e-3747.98Floral homeotic protein AGAMOUS OS=Panax ginseng G... [more]
AG_SOLLC3.166e-3742.01Floral homeotic protein AGAMOUS OS=Solanum lycoper... [more]
AGL11_ARATH3.166e-3742.35Agamous-like MADS-box protein AGL11 OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1DF02ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257862 ID=DY257862; Name=DY257862; organism=Citrus clementina; type=EST; length=995bp
GAAAATGGGAAGGGGTAGGGTTGAGTTGAAGAGGATAGAGAACAAGATCA
ACAGGCAAGTGACCTTTGCAAAGAGAAGAAATGGCCTTTTGAAGAAAGCT
TATGAGCTTTCCGTTCTTTGTGATGCTGAGGTTGCTCTCATCATTTTCTC
CAATAGAGGAAAGCTGTACGAGTTTTGCAGTAGTTCAAGCATGCTCAAAA
CGCTTGAGAGGTACCAGAAGTGCAACTATGGAGCACCAGAACCGAATGTG
TCCGCAAGGGAGGCCCTGGAGCTAAGTAGCCAGCAAGAATATCTGAAGCT
TAAAGCACGATATGAAGCCCTACAGAGATCCCAAAGGAATCTCCTTGGAG
AAGAACTTGGCCCTCTAAACAGCAAAGAGCTTGAGTCACTTGAAAGGCAG
CTTGATATGTCATTGAAGCAGATCAGATCAACAAGAACTCAGTACATGCT
GGATACCCTTACTGAACTGCAACATAAGGAACAGTTGCTGAGCGAAGCAA
ATAAGACCCTCAAACAAAGGACGATGACGCTAAGGCACGCCGATTTTGCT
GGTTTGCAGTTGATGGAGGGATACCAAGTGAACACACTTCAATTGAATCC
TAGTGCAGAAGATTGTGGTTATGGGCTTAAACCAGCTCAACCTCAGGGCG
ATACCTTCTTTCACGCCTTGGAATGTGAACCCACATTGCAAATTGGATAC
CAGCCTGCGGACCCAATATCGGTTGTCACAGCAGGCCCGAGTCTGAATAA
TTACATGCAAGGATGGCTACCATGCTAAGAGAGCGGCGGGCATTACCAGT
CAATGTATTGCAGTTGATCCATAAGAATCAGCAACTTTGTATCCCTTTGT
AAGCAACCCTATTCAGTGACTAGGAACACGCAATCATAAAGTTTTATTAT
AAAAACTCCAACGTGAATCTGCCCTTTAAGGAAACTGATGACGAAATATA
GCTATGTTGGGTGGTGATTGAATTTCAATCCCCGCGCCTAATCTT
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