DY257862

Overview
NameDY257862
Unique NameDY257862
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length995
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15455 contig Ccv1_Contig15455:18..1012. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257862 vs. ExPASy Swiss-Prot
Match: AGL19_ARATH (Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana GN=AGL19 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.921e-34
Identity = 88/185 (47.57%), Postives = 121/185 (65.41%), Query Frame = 2
Query:    5 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHADFAGLQ 559
            M RG+ E+KRIEN  +RQVTF+KRRNGLLKKA+ELSVLCDAEVAL+IFS R KLYEF SSSS+  T+ERYQ+        N   R      ++ E   L  + E L+ S+R LLGE +   + +EL+ LE QLD SL +IR+ + Q + + + +L+ +E+ L + NK LK++ + +  A  A  Q
Sbjct:    1 MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALVIFSPRSKLYEF-SSSSIAATIERYQR--RIKEIGNNHKRNDNSQQARDETSGLTKKIEQLEISKRKLLGEGIDACSIEELQQLENQLDRSLSRIRAKKYQLLREEIEKLKAEERNLVKENKDLKEKWLGMGTATIASSQ 182          
BLAST of DY257862 vs. ExPASy Swiss-Prot
Match: MAD56_ORYSI (MADS-box transcription factor 56 OS=Oryza sativa subsp. indica GN=MADS56 PE=2 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 2.509e-34
Identity = 84/179 (46.93%), Postives = 115/179 (64.25%), Query Frame = 2
Query:    5 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHA 541
            M RGR ELKRIEN  +RQVTF+KRRNGLLKKA+ELSVLCDAEVALI+FS RG+LYEF S+ S+ KT++RY+   Y     N    +      + + L L  + EAL  S+R +LGE L   + +EL  LE +L+ SL  IR  +T+ +   + +L+ KE+ L + N+ L+ +   L  A
Sbjct:    1 MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFASAPSLQKTIDRYKA--YTKDHVNNKTIQQDIQQVKDDTLGLAKKLEALDESRRKILGENLEGCSIEELRGLEMKLEKSLHNIRLKKTELLERQIAKLKEKERTLLKDNENLRGKHRNLEAA 177          
BLAST of DY257862 vs. ExPASy Swiss-Prot
Match: SOC1_ARATH (MADS-box protein SOC1 OS=Arabidopsis thaliana GN=SOC1 PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 7.299e-34
Identity = 81/175 (46.29%), Postives = 120/175 (68.57%), Query Frame = 2
Query:    5 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQ---EYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR 520
            M RG+ ++KRIEN  +RQVTF+KRRNGLLKKA+ELSVLCDAEV+LIIFS +GKLYEF +SS+M  T++RY +      +  VS +   E + Q    E   +  + E L+ S+R LLGE +G  + +EL+ +E+QL+ S+K IR+ +TQ   + + +L+ KE+ L+  N+ L ++
Sbjct:    1 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKGKLYEF-ASSNMQDTIDRYLR----HTKDRVSTKPVSEENMQHLKYEAANMMKKIEQLEASKRKLLGEGIGTCSIEELQQIEQQLEKSVKCIRARKTQVFKEQIEQLKQKEKALAAENEKLSEK 170          
BLAST of DY257862 vs. ExPASy Swiss-Prot
Match: MAD27_ORYSJ (MADS-box transcription factor 27 OS=Oryza sativa subsp. japonica GN=MADS27 PE=2 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 2.124e-33
Identity = 78/178 (43.82%), Postives = 116/178 (65.17%), Query Frame = 2
Query:    5 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSS-QQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLR 535
            MGRG++ ++RI+N  +RQVTF+KRRNG+ KKA EL++LCDAEV L+IFS+ G+LYE+ SS+SM   ++RY K      E    A    EL   Q+E   L+ +   LQ + R L+GE+L  LN KEL+SLE QL++SL+ +R+ +   ++D + EL  K  L+ + N  L ++   +R
Sbjct:    1 MGRGKIVIRRIDNSTSRQVTFSKRRNGIFKKAKELAILCDAEVGLMIFSSTGRLYEY-SSTSMKSVIDRYGK---SKDEQQAVANPNSELKFWQREAASLRQQLHNLQENHRQLMGEDLSGLNVKELQSLENQLEISLRSVRTKKDHVLIDEIHELNRKGSLVHQENMELYKKISLIR 174          
BLAST of DY257862 vs. ExPASy Swiss-Prot
Match: MADS3_ORYSJ (MADS-box transcription factor 3 OS=Oryza sativa subsp. japonica GN=MADS3 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 6.179e-33
Identity = 88/238 (36.97%), Postives = 137/238 (57.56%), Query Frame = 2
Query:    5 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQR-SQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHADFAGLQLMEGYQVNTL--QLNPSAEDCGYGLKPAQPQGDTFFHALECEPTLQIGYQPA 709
            MGRG++E+KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FS+RG+LYE+ +++S+  T+ERY+K N         A E      QQE  KL+ +  +LQ  + R ++G+ +  ++ ++L+ +E +L+  + +IR+ + + +   +  +Q +E  L   N  L+ + +         L +M     +     +N   +   +       Q   + H L+   TLQ+G QPA
Sbjct:    1 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY-ANNSVKSTVERYKKANSDTSNSGTVA-EVNAQHYQQESSKLRQQISSLQNANSRTIVGDSINTMSLRDLKQVENRLEKGIAKIRARKNELLYAEVEYMQKREVELQNDNMYLRSKVVENERGQ-QPLNMMGAASTSEYDHMVNNPYDSRNFLQVNIMQQPQHYAHQLQ-PTTLQLGQQPA 234          
BLAST of DY257862 vs. ExPASy Swiss-Prot
Match: MAD50_ORYSJ (MADS-box transcription factor 50 OS=Oryza sativa subsp. japonica GN=MADS50 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 8.070e-33
Identity = 84/175 (48.00%), Postives = 121/175 (69.14%), Query Frame = 2
Query:    5 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQ---KCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR 520
            M RG+ ++KRIEN  +RQVTF+KRRNGLLKKA+ELSVLCDAEVALI+FS RGKLYEF S+S+  KT+ERY+   K N G    N + ++ +E   + +   L  + EAL+  +R LLGE+L   + +EL SLE +L+ SL  IR  +T+ + + + +L+ KE  L + N+ L+++
Sbjct:    1 MVRGKTQMKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFASASTQ-KTIERYRTYTKENIG----NKTVQQDIE-QVKADADGLAKKLEALETYKRKLLGEKLDECSIEELHSLEVKLERSLISIRGRKTKLLEEQVAKLREKEMKLRKDNEELREK 169          
BLAST of DY257862 vs. ExPASy Swiss-Prot
Match: MAD20_ORYSJ (MADS-box transcription factor 20 OS=Oryza sativa subsp. japonica GN=MADS20 PE=2 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 1.798e-32
Identity = 73/160 (45.62%), Postives = 114/160 (71.25%), Query Frame = 2
Query:    5 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS-SSMLKTLERYQKCNYGAPEPNVSAR-EALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHK 478
            MGRG+V+++RIEN+++RQVTF+KRR GLLKKA+E++VLCD +VA I+FS +G L+ + SS ++M + LE+Y +    +   NV      LE S   +++KL+ R EAL++SQRNL+G+EL  L  ++++ LE Q+D SL  IRS + + +++  T L+ K
Sbjct:    1 MGRGKVQVRRIENEVSRQVTFSKRRPGLLKKAHEIAVLCDVDVAAIVFSAKGNLFHYASSHTTMERILEKYDRHELLSEGNNVIEEFPELEGSMSYDHIKLRGRIEALKKSQRNLMGQELDSLTLQDIQQLENQIDTSLNNIRSRKEKLLMEKNTILEKK 160          
BLAST of DY257862 vs. ExPASy Swiss-Prot
Match: AGL15_BRANA (Agamous-like MADS-box protein AGL15 OS=Brassica napus GN=AGL15 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 8.923e-32
Identity = 81/177 (45.76%), Postives = 112/177 (63.28%), Query Frame = 2
Query:    5 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLR 535
            MGRG++E+KRIEN  +RQVTF+KRR GLLKKA+ELSVLCDAEVA+I+FS  GKL+EF SS+SM KTL RY      +  P ++ +   +    +  L LK     LQ    ++ G+ L  L+ KEL+ LE+QL+ SL  +R  +   +   L E + KEQ     N+TL+++   LR
Sbjct:    1 MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAHELSVLCDAEVAVIVFSKSGKLFEF-SSTSMKKTLLRYGNYQISSDVPGINCKTENQEECTEVDL-LKDEISMLQEKHLHMQGKPLNLLSLKELQHLEKQLNFSLISVRERKELLLTKQLEESRLKEQRAELENETLRRQVQELR 175          
BLAST of DY257862 vs. ExPASy Swiss-Prot
Match: MAD25_ORYSJ (MADS-box transcription factor 25 OS=Oryza sativa subsp. japonica GN=MADS25 PE=2 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 4.428e-31
Identity = 81/214 (37.85%), Postives = 129/214 (60.28%), Query Frame = 2
Query:    5 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSS--QQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHADFAGL--QLMEGYQVNTLQLNPSAEDCGYGLKP 634
            MGRG++ +KRI+N +NRQVTF+KRR GL+KKA EL++LCDA+V LI+FS  G+LY+F SSSSM   +ERYQ+    A E +      +  +   Q+E   L+ + + L  + R LLGEE+     ++L+ L+ Q++MSL  IR+ + Q + + + +L  K  L+ + N  L+++   + H     L  +L  G   ++ Q+  S++D G    P
Sbjct:    1 MGRGKIAIKRIDNTMNRQVTFSKRRGGLMKKARELAILCDADVGLIVFSCTGRLYDF-SSSSMKSIIERYQE----AGEEHCRLLNPMSEAKFWQREVTTLRQQVQNLHHNNRQLLGEEISNFTVRDLQLLQNQVEMSLHSIRNKKDQLLAEEILKLNEKGSLVQKENSELRKK-FNIAHQRNIELHKKLNSGESTSSEQVTRSSKDPGESSTP 208          
BLAST of DY257862 vs. ExPASy Swiss-Prot
Match: AGL12_ARATH (Agamous-like MADS-box protein AGL12 OS=Arabidopsis thaliana GN=AGL12 PE=2 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 4.428e-31
Identity = 79/200 (39.50%), Postives = 118/200 (59.00%), Query Frame = 2
Query:    5 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKC---NYGAPEPNVSAREALE---LSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTL----KQRTMTLRHADFAGLQLMEGY 574
            M RG+++LKRIEN ++RQVTF KRR GLLKKA ELSVLCDAE+ ++IFS +GKL+E  +  +M   +++Y KC     G+     +A+E L+   L  + E   LK   E LQ+    + G   G +N +EL  LE+ L+  + QIRS +   ML  +  L++KE +L   NK L    ++   ++  A+FA ++    Y
Sbjct:    1 MARGKIQLKRIENPVHRQVTFCKRRTGLLKKAKELSVLCDAEIGVVIFSPQGKLFELATKGTMEGMIDKYMKCTGGGRGSSSATFTAQEQLQPPNLDPKDEINVLKQEIEMLQKGISYMFGGGDGAMNLEELLLLEKHLEYWISQIRSAKMDVMLQEIQSLRNKEGVLKNTNKYLLEKIEENNNSILDANFAVMETNYSY 200          
The following BLAST results are available for this feature:
BLAST of DY257862 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
AGL19_ARATH1.921e-3447.57Agamous-like MADS-box protein AGL19 OS=Arabidopsis... [more]
MAD56_ORYSI2.509e-3446.93MADS-box transcription factor 56 OS=Oryza sativa s... [more]
SOC1_ARATH7.299e-3446.29MADS-box protein SOC1 OS=Arabidopsis thaliana GN=S... [more]
MAD27_ORYSJ2.124e-3343.82MADS-box transcription factor 27 OS=Oryza sativa s... [more]
MADS3_ORYSJ6.179e-3336.97MADS-box transcription factor 3 OS=Oryza sativa su... [more]
MAD50_ORYSJ8.070e-3348.00MADS-box transcription factor 50 OS=Oryza sativa s... [more]
MAD20_ORYSJ1.798e-3245.63MADS-box transcription factor 20 OS=Oryza sativa s... [more]
AGL15_BRANA8.923e-3245.76Agamous-like MADS-box protein AGL15 OS=Brassica na... [more]
MAD25_ORYSJ4.428e-3137.85MADS-box transcription factor 25 OS=Oryza sativa s... [more]
AGL12_ARATH4.428e-3139.50Agamous-like MADS-box protein AGL12 OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1DF02ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257862 ID=DY257862; Name=DY257862; organism=Citrus clementina; type=EST; length=995bp
GAAAATGGGAAGGGGTAGGGTTGAGTTGAAGAGGATAGAGAACAAGATCA
ACAGGCAAGTGACCTTTGCAAAGAGAAGAAATGGCCTTTTGAAGAAAGCT
TATGAGCTTTCCGTTCTTTGTGATGCTGAGGTTGCTCTCATCATTTTCTC
CAATAGAGGAAAGCTGTACGAGTTTTGCAGTAGTTCAAGCATGCTCAAAA
CGCTTGAGAGGTACCAGAAGTGCAACTATGGAGCACCAGAACCGAATGTG
TCCGCAAGGGAGGCCCTGGAGCTAAGTAGCCAGCAAGAATATCTGAAGCT
TAAAGCACGATATGAAGCCCTACAGAGATCCCAAAGGAATCTCCTTGGAG
AAGAACTTGGCCCTCTAAACAGCAAAGAGCTTGAGTCACTTGAAAGGCAG
CTTGATATGTCATTGAAGCAGATCAGATCAACAAGAACTCAGTACATGCT
GGATACCCTTACTGAACTGCAACATAAGGAACAGTTGCTGAGCGAAGCAA
ATAAGACCCTCAAACAAAGGACGATGACGCTAAGGCACGCCGATTTTGCT
GGTTTGCAGTTGATGGAGGGATACCAAGTGAACACACTTCAATTGAATCC
TAGTGCAGAAGATTGTGGTTATGGGCTTAAACCAGCTCAACCTCAGGGCG
ATACCTTCTTTCACGCCTTGGAATGTGAACCCACATTGCAAATTGGATAC
CAGCCTGCGGACCCAATATCGGTTGTCACAGCAGGCCCGAGTCTGAATAA
TTACATGCAAGGATGGCTACCATGCTAAGAGAGCGGCGGGCATTACCAGT
CAATGTATTGCAGTTGATCCATAAGAATCAGCAACTTTGTATCCCTTTGT
AAGCAACCCTATTCAGTGACTAGGAACACGCAATCATAAAGTTTTATTAT
AAAAACTCCAACGTGAATCTGCCCTTTAAGGAAACTGATGACGAAATATA
GCTATGTTGGGTGGTGATTGAATTTCAATCCCCGCGCCTAATCTT
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