DY257862

Overview
NameDY257862
Unique NameDY257862
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length995
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15455 contig Ccv1_Contig15455:18..1012. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257862 vs. ExPASy Swiss-Prot
Match: DEFA_ANTMA (Floral homeotic protein DEFICIENS OS=Antirrhinum majus GN=DEFA PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 2.203e-22
Identity = 68/190 (35.79%), Postives = 106/190 (55.79%), Query Frame = 2
Query:    5 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTL-ERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHADFAGLQLMEG 571
            M RG++++KRIEN+ NRQVT++KRRNGL KKA+ELSVLCDA+V++I+ S+  KL+E+ S ++  K L ++YQK         V    +     Q+   KL      L+R  R  +GE L  L  +++ +L   +D SLK IR  + + + + +   + K + + E ++ L       R     GL   EG
Sbjct:    1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKAHELSVLCDAKVSIIMISSTQKLHEYISPTTATKQLFDQYQKA------VGVDLWSSHYEKMQEHLKKLNEVNRNLRREIRQRMGESLNDLGYEQIVNLIEDMDNSLKLIRERKYKVISNQIDTSKKKVRNVEEIHRNLVLEFDARREDPHFGLVDNEG 184          
BLAST of DY257862 vs. ExPASy Swiss-Prot
Match: MADS4_ORYSJ (MADS-box transcription factor 4 OS=Oryza sativa subsp. japonica GN=MADS4 PE=1 SV=3)

HSP 1 Score: 106.301 bits (264), Expect = 2.877e-22
Identity = 67/182 (36.81%), Postives = 103/182 (56.59%), Query Frame = 2
Query:    5 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSS------MLKTLERYQ----KCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR 520
            MGRG++E+KRIEN  NRQVTF+KRR G+LKKA E+ VLCDAEV ++IFS+ GKL ++C+  +      + + LE+YQ    K  +     ++SA          E  ++K   + +Q   R++ GE+L  L  KEL ++E  L+     +R      M+D     +  E++L + +K L  R
Sbjct:    1 MGRGKIEIKRIENSTNRQVTFSKRRAGILKKAREIGVLCDAEVGVVIFSSAGKLSDYCTPKTTSVFPPLSRILEKYQTNSGKILWDEKHKSLSA----------EIDRVKKENDNMQIELRHMKGEDLNSLQPKELIAIEEALNNGQANLRDK----MMDHWRMHKRNEKMLEDEHKMLAFR 168          
BLAST of DY257862 vs. ExPASy Swiss-Prot
Match: AP32_ASAEU (MADS-box protein AeAP3-2 (Fragment) OS=Asarum europaeum GN=AP3-2 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.579e-20
Identity = 69/206 (33.50%), Postives = 112/206 (54.37%), Query Frame = 2
Query:   83 GLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSS-SMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYL---KLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANK------------TLKQRTMTLRHADFAGLQLMEGYQV---NTLQLNPSAEDCGYGLKPAQP 643
            GLLKKA EL++LCDA++ +IIFS+ GK++EF S   SM + ++RYQK         +S   A    +QQ Y    ++K   + LQ + R+  GE+L  L   E+  LE+QL++S+ ++RS + Q +   L  L+ KE +L E N+            +++Q+ +     D  G+   + +Q    + LQL+P      + L+PAQP
Sbjct:    2 GLLKKARELAILCDAQLGVIIFSSSGKMFEFSSPPISMREIIDRYQK---------LSGNCAPVYDNQQVYCEITRMKNEIDKLQATMRHFAGEDLTSLTMNEMLQLEQQLEISVNKVRSRKEQLLQQQLDNLRRKENMLEEQNRELYRVIQDHHAASMEQKMVDPSMLDHFGVFYQDDHQAARSSMLQLSPQLHP--FRLQPAQP 196          
BLAST of DY257862 vs. ExPASy Swiss-Prot
Match: AP3_ARATH (Floral homeotic protein APETALA 3 OS=Arabidopsis thaliana GN=AP3 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 3.517e-20
Identity = 60/170 (35.29%), Postives = 102/170 (60.00%), Query Frame = 2
Query:    5 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTL-ERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTL 511
            M RG++++KRIEN+ NRQVT++KRRNGL KKA+EL+VLCDA V++I+FS+  KL+E+ S ++  K + + YQ  +    + +V A +   +  Q+   KL      L+   +  LGE L  L+ +EL  LE +++ + K +R  + + + + +   + K +   +  K L
Sbjct:    1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKAHELTVLCDARVSIIMFSSSNKLHEYISPNTTTKEIVDLYQTIS----DVDVWATQYERM--QETKRKLLETNRNLRTQIKQRLGECLDELDIQELRRLEDEMENTFKLVRERKFKSLGNQIETTKKKNKSQQDIQKNL 164          
BLAST of DY257862 vs. ExPASy Swiss-Prot
Match: CMB2_DIACA (MADS-box protein CMB2 OS=Dianthus caryophyllus GN=CMB2 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.336e-19
Identity = 59/170 (34.71%), Postives = 99/170 (58.24%), Query Frame = 2
Query:    5 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSS-SMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTL 511
            MGRG++E+++IENK NRQVTF+KRRNG++KKA EL+VLCDA+V+L++ S+  KL+ + S   S+ K  + YQK         V          Q+++ K+      L+R     +G +L  L   EL +L+++++ ++ QIR+ +   + +     + K + L E +  L
Sbjct:    1 MGRGKLEIRKIENKTNRQVTFSKRRNGIMKKAQELTVLCDAKVSLLMISSTHKLHHYLSPGVSLKKMYDEYQKIE------GVDLWRKQWERMQEQHRKVLELNSLLRREISRRMGGDLEGLTLVELSALQQEMEEAIIQIRNKKYHTIKNQTGTTRKKIKNLEERHTDL 164          
BLAST of DY257862 vs. ExPASy Swiss-Prot
Match: MAD32_ORYSJ (MADS-box transcription factor 32 OS=Oryza sativa subsp. japonica GN=MADS32 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 8.663e-19
Identity = 57/159 (35.85%), Postives = 92/159 (57.86%), Query Frame = 2
Query:    5 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSS--SMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQH 475
            MGRGR E+KRIEN   RQ TF KRR+GL KKA EL+VLCDA++ L++FS  GKLY F S +  S+ + +ERY+   +     ++      EL       K+ +  + L++  R +  ++        LE+LE  L+ +++++RS + + +   +  LQ+
Sbjct:    1 MGRGRSEIKRIENPTQRQSTFYKRRDGLFKKARELAVLCDADLLLLLFSASGKLYHFLSPTVPSVREFVERYEATTHTKVWADIRQERRAELE------KVGSMCDLLEKQLRFMTVDDGEEYTVPSLEALEHNLEAAMRKVRSEKDRKIGGEICYLQN 153          
BLAST of DY257862 vs. ExPASy Swiss-Prot
Match: MEF2C_PIG (Myocyte-specific enhancer factor 2C OS=Sus scrofa GN=MEF2C PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 6.864e-16
Identity = 48/131 (36.64%), Postives = 78/131 (59.54%), Query Frame = 2
Query:    5 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERY--------------------QKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQR 337
            MGR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L +Y                    +K N G   P+  +  AL   ++++Y K+   ++ + +S +
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQY-ASTDMDKVLLKYTEYNEPHESRTNSDIVEALNKKENKGCESPDPDSSYALTPRTEEKYKKINEEFDNMIKSHK 130          
BLAST of DY257862 vs. ExPASy Swiss-Prot
Match: MEF2_DROME (Myocyte-specific enhancer factor 2 OS=Drosophila melanogaster GN=Mef2 PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 2.608e-15
Identity = 42/89 (47.19%), Postives = 65/89 (73.03%), Query Frame = 2
Query:    5 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALE 271
            MGR ++++ RI ++ NRQVTF KR+ G++KKAYELSVLCD E+ALIIFS+  KLY++ +S+ M + L +Y +  Y  P  +++ +  +E
Sbjct:    1 MGRKKIQISRITDERNRQVTFNKRKFGVMKKAYELSVLCDCEIALIIFSSSNKLYQY-ASTDMDRVLLKYTE--YNEPHESLTNKNIIE 86          
BLAST of DY257862 vs. ExPASy Swiss-Prot
Match: MEF2D_XENLA (Myocyte-specific enhancer factor 2D homolog OS=Xenopus laevis GN=mef2d PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.608e-15
Identity = 44/87 (50.57%), Postives = 64/87 (73.56%), Query Frame = 2
Query:    5 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREA 265
            MGR +++++RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L +Y + N    EP+ S   A
Sbjct:    1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQY-ASTDMDKVLLKYTEYN----EPHESRTNA 82          
BLAST of DY257862 vs. ExPASy Swiss-Prot
Match: MEF2D_RAT (Myocyte-specific enhancer factor 2D OS=Rattus norvegicus GN=Mef2d PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.608e-15
Identity = 44/87 (50.57%), Postives = 64/87 (73.56%), Query Frame = 2
Query:    5 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREA 265
            MGR +++++RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L +Y + N    EP+ S   A
Sbjct:    1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQY-ASTDMDKVLLKYTEYN----EPHESRTNA 82          
The following BLAST results are available for this feature:
BLAST of DY257862 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
DEFA_ANTMA2.203e-2235.79Floral homeotic protein DEFICIENS OS=Antirrhinum m... [more]
MADS4_ORYSJ2.877e-2236.81MADS-box transcription factor 4 OS=Oryza sativa su... [more]
AP32_ASAEU1.579e-2033.50MADS-box protein AeAP3-2 (Fragment) OS=Asarum euro... [more]
AP3_ARATH3.517e-2035.29Floral homeotic protein APETALA 3 OS=Arabidopsis t... [more]
CMB2_DIACA1.336e-1934.71MADS-box protein CMB2 OS=Dianthus caryophyllus GN=... [more]
MAD32_ORYSJ8.663e-1935.85MADS-box transcription factor 32 OS=Oryza sativa s... [more]
MEF2C_PIG6.864e-1636.64Myocyte-specific enhancer factor 2C OS=Sus scrofa ... [more]
MEF2_DROME2.608e-1547.19Myocyte-specific enhancer factor 2 OS=Drosophila m... [more]
MEF2D_XENLA2.608e-1550.57Myocyte-specific enhancer factor 2D homolog OS=Xen... [more]
MEF2D_RAT2.608e-1550.57Myocyte-specific enhancer factor 2D OS=Rattus norv... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAB1DF02ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257862 ID=DY257862; Name=DY257862; organism=Citrus clementina; type=EST; length=995bp
GAAAATGGGAAGGGGTAGGGTTGAGTTGAAGAGGATAGAGAACAAGATCA
ACAGGCAAGTGACCTTTGCAAAGAGAAGAAATGGCCTTTTGAAGAAAGCT
TATGAGCTTTCCGTTCTTTGTGATGCTGAGGTTGCTCTCATCATTTTCTC
CAATAGAGGAAAGCTGTACGAGTTTTGCAGTAGTTCAAGCATGCTCAAAA
CGCTTGAGAGGTACCAGAAGTGCAACTATGGAGCACCAGAACCGAATGTG
TCCGCAAGGGAGGCCCTGGAGCTAAGTAGCCAGCAAGAATATCTGAAGCT
TAAAGCACGATATGAAGCCCTACAGAGATCCCAAAGGAATCTCCTTGGAG
AAGAACTTGGCCCTCTAAACAGCAAAGAGCTTGAGTCACTTGAAAGGCAG
CTTGATATGTCATTGAAGCAGATCAGATCAACAAGAACTCAGTACATGCT
GGATACCCTTACTGAACTGCAACATAAGGAACAGTTGCTGAGCGAAGCAA
ATAAGACCCTCAAACAAAGGACGATGACGCTAAGGCACGCCGATTTTGCT
GGTTTGCAGTTGATGGAGGGATACCAAGTGAACACACTTCAATTGAATCC
TAGTGCAGAAGATTGTGGTTATGGGCTTAAACCAGCTCAACCTCAGGGCG
ATACCTTCTTTCACGCCTTGGAATGTGAACCCACATTGCAAATTGGATAC
CAGCCTGCGGACCCAATATCGGTTGTCACAGCAGGCCCGAGTCTGAATAA
TTACATGCAAGGATGGCTACCATGCTAAGAGAGCGGCGGGCATTACCAGT
CAATGTATTGCAGTTGATCCATAAGAATCAGCAACTTTGTATCCCTTTGT
AAGCAACCCTATTCAGTGACTAGGAACACGCAATCATAAAGTTTTATTAT
AAAAACTCCAACGTGAATCTGCCCTTTAAGGAAACTGATGACGAAATATA
GCTATGTTGGGTGGTGATTGAATTTCAATCCCCGCGCCTAATCTT
back to top