DY257874
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY257874 vs. ExPASy Swiss-Prot
Match: RL3_RICB8 (50S ribosomal protein L3 OS=Rickettsia bellii (strain OSU 85-389) GN=rplC PE=3 SV=1) HSP 1 Score: 131.724 bits (330), Expect = 1.127e-38 Identity = 72/163 (44.17%), Postives = 96/163 (58.90%), Query Frame = 1 Query: 220 RTGLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 RTG+IA K G+T+ ++ G R+P++++ VDD V K EK G+ +L +G KK +TKP F V K KL+EF ++ED + I SL V HF GQ++D+ R F+G+ ASHG S+SHRS GSTGQR PGKVFKGKK G Sbjct: 2 RTGIIAQKVGMTSVFNNNGKRVPLTLVKVDDCQVVGHKIAEKHGYNALVIGIKDKKISRVTKPMKQVFANAKVSPKTKLKEFRISEDNFIDIAASLEVDHFTAGQFIDVTATTIGKGFAGSMKRHNFRGLEASHGVSISHRSHGSTGQRQDPGKVFKGKKMAG 164 HSP 2 Score: 50.8322 bits (120), Expect = 1.127e-38 Identity = 20/50 (40.00%), Postives = 35/50 (70.00%), Query Frame = 3 Query: 690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 839 G+KM G MG Q T++N+ ++ ID + L+ ++G +PG G+++ IKDA+ Sbjct: 159 GKKMAGHMGCSQVTIQNLKIFAIDKEQGLIMIQGSIPGHKGSYISIKDAI 208
BLAST of DY257874 vs. ExPASy Swiss-Prot
Match: RL3_NITHX (50S ribosomal protein L3 OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=rplC PE=3 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 1.465e-38 Identity = 70/163 (42.94%), Postives = 97/163 (59.51%), Query Frame = 1 Query: 220 RTGLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 R+G+IA K G+T + G IPV+VL + + V +T EK G+ +LQ+G G +K ++ K E G F V KRK+ EF V+ED+L+P+G + HF+ GQ+VD+ RW F G+ A+HG S+SHRS+GSTG R PGK FK KK G Sbjct: 2 RSGVIAQKVGMTRVFTDAGEHIPVTVLRLSNCQVLGHRTSEKNGYVALQLGSGARKTVYLPKAERGQFAVAKVEPKRKVAEFRVSEDSLIPVGAEIQADHFVVGQFVDVTGTSVGKGFAGGMKRWNFGGLRATHGVSVSHRSIGSTGGRQDPGKTFKNKKMPG 164 HSP 2 Score: 46.9802 bits (110), Expect = 1.465e-38 Identity = 26/61 (42.62%), Postives = 37/61 (60.66%), Query Frame = 3 Query: 693 QKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVXQKPDVKLLPFP 875 +KMPG MG + T N+ V + D R L+ V G VPG+ G ++ ++DAV +KP K P P Sbjct: 160 KKMPGHMGVDRVTTLNLRVVQTDVERGLILVEGAVPGSKGGWIAVRDAV-KKPLPKDAPKP 219
BLAST of DY257874 vs. ExPASy Swiss-Prot
Match: RL3_RHOCS (50S ribosomal protein L3 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=rplC PE=3 SV=1) HSP 1 Score: 132.88 bits (333), Expect = 1.910e-38 Identity = 69/165 (41.82%), Postives = 97/165 (58.79%), Query Frame = 1 Query: 220 RTGLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLGEW 714 R+GLIA K G+T + G +PV+VL +D V +T +++G+ +LQ+G G+ K K++ K + F V K+KL EF VT DAL+ +G + HF+PGQ+VD+ RW F G+ A+HG S+SHRS GSTG R PGK FK KK G + Sbjct: 2 RSGLIAQKLGMTRVFTDEGEHVPVTVLKLDQVQVVAQRTEDRDGYTALQLGAGKAKVKNVAKAQREQFARAKVEPKKKLVEFRVTPDALIEVGAEITADHFVPGQFVDVTGTTIGRGFTGPMRRWNFGGLRATHGVSVSHRSHGSTGGRQDPGKTFKNKKMAGHY 166 HSP 2 Score: 48.9062 bits (115), Expect = 1.910e-38 Identity = 27/66 (40.91%), Postives = 42/66 (63.64%), Query Frame = 3 Query: 693 QKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVXQK-PDVKLLPFPHTLQ 887 +KM G G ++ TV+N+ V ++D R L+ V+G +PG G +V I+DAV +K PD PFP ++ Sbjct: 160 KKMAGHYGVEKVTVQNLKVVQVDVERGLILVKGAIPGHEGGWVLIRDAVKKKLPDG--APFPGAIR 223
BLAST of DY257874 vs. ExPASy Swiss-Prot
Match: RL3_RICM5 (50S ribosomal protein L3 OS=Rickettsia massiliae (strain Mtu5) GN=rplC PE=3 SV=1) HSP 1 Score: 131.724 bits (330), Expect = 5.510e-38 Identity = 73/163 (44.79%), Postives = 97/163 (59.51%), Query Frame = 1 Query: 220 RTGLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 RTG+IA K G+T+ ++ G RI ++++ VDD V KT EK G+ +L +G KK +TKP F + K KL+EF ++E+ + I TSL V HF GQ+VDI R F+G+ ASHG S+SHRS GSTGQR PGKVF+GKK G Sbjct: 2 RTGIIAQKVGMTSVFNDKGERISLTLVKVDDCQVVGHKTLEKHGYNALVIGVKDKKISRVTKPMKQVFANAKISPKTKLKEFRISEEHFIDIATSLEVDHFTAGQFVDITATTIGKGFAGSMKRHNFRGLEASHGVSISHRSHGSTGQRQDPGKVFRGKKMAG 164 HSP 2 Score: 48.521 bits (114), Expect = 5.510e-38 Identity = 18/50 (36.00%), Postives = 34/50 (68.00%), Query Frame = 3 Query: 690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 839 G+KM G MG Q T++N+ ++ +D R L+ ++G +PG +++ +KDA+ Sbjct: 159 GKKMAGHMGCNQVTIQNLKIFAVDKERKLIMIQGSIPGHKNSYLSVKDAI 208
BLAST of DY257874 vs. ExPASy Swiss-Prot
Match: RL3_RICCK (50S ribosomal protein L3 OS=Rickettsia canadensis (strain McKiel) GN=rplC PE=3 SV=1) HSP 1 Score: 131.339 bits (329), Expect = 7.179e-38 Identity = 72/163 (44.17%), Postives = 97/163 (59.51%), Query Frame = 1 Query: 220 RTGLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 RTG+IA K G+T+ ++ G RI ++++ VDD V KT EK G+ +L +G KK +TKP F + K KL+EF ++E+ + + SL V HF+ GQ+VDI R F+G+ ASHG S+SHRS GSTGQR PGKVFKGKK G Sbjct: 2 RTGIIAQKIGMTSVFNDKGERIALTLVKVDDCQVVGHKTLEKHGYNALVIGVKDKKISRVTKPMKQVFANAKISPKTKLKEFRISEENFIDVAASLEVDHFMAGQFVDITAITIGKGFAGSMKRHNFRGLEASHGVSISHRSHGSTGQRQDPGKVFKGKKMAG 164 HSP 2 Score: 48.521 bits (114), Expect = 7.179e-38 Identity = 19/50 (38.00%), Postives = 34/50 (68.00%), Query Frame = 3 Query: 690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 839 G+KM G MG Q T++N+ ++ +D R L+ ++G +PG +++ IKDA+ Sbjct: 159 GKKMAGHMGCNQVTIQNLKIFAVDKDRKLIMIQGSIPGHKNSYLSIKDAI 208
BLAST of DY257874 vs. ExPASy Swiss-Prot
Match: RL3_RICAE (50S ribosomal protein L3 OS=Rickettsia africae (strain ESF-5) GN=rplC PE=3 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 9.353e-38 Identity = 74/163 (45.40%), Postives = 96/163 (58.90%), Query Frame = 1 Query: 220 RTGLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 RTG+IA K G+T+ ++ G RI ++++ VDD V KT EK G+ +L VG KK +TKP F + K KL+EF ++E+ + I SL V HF GQ+VDI R F+G+ ASHG S+SHRS GSTGQR PGKVFKGKK G Sbjct: 2 RTGIIAQKIGMTSVFNDKGERISLTLVKVDDCQVVGHKTLEKHGYNALVVGVKDKKISRVTKPMRQVFANAKISPKTKLKEFRISEENFIDIAASLEVDHFTAGQFVDITATTIGKGFAGSMKRHNFRGLEASHGVSISHRSHGSTGQRQDPGKVFKGKKMAG 164 HSP 2 Score: 48.521 bits (114), Expect = 9.353e-38 Identity = 18/50 (36.00%), Postives = 34/50 (68.00%), Query Frame = 3 Query: 690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 839 G+KM G MG Q T++N+ ++ +D R L+ ++G +PG +++ +KDA+ Sbjct: 159 GKKMAGHMGCNQVTIQNLKIFAVDKERKLIMIQGSIPGHKNSYLSVKDAI 208
BLAST of DY257874 vs. ExPASy Swiss-Prot
Match: RL3_OLICO (50S ribosomal protein L3 OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=rplC PE=3 SV=1) HSP 1 Score: 133.65 bits (335), Expect = 1.216e-37 Identity = 69/163 (42.33%), Postives = 97/163 (59.51%), Query Frame = 1 Query: 220 RTGLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 R+G+IA K G+ + + G IPV+VL + + V +T +K G+ +LQ+G G +K +M K E G F V KRK+ EF V+EDA++P+G + HF+ GQ+VD+ RW F G+ A+HG S+SHRS+GSTG R PGK FK KK G Sbjct: 2 RSGVIAQKVGMMRVFTEAGEHIPVTVLKLGNCQVVGHRTKDKNGYTALQLGAGARKSVYMPKAERGQFAVAKVEPKRKVAEFRVSEDAIIPVGAEIQADHFVVGQFVDVTGTSIGKGYAGGMKRWNFGGLRATHGVSVSHRSIGSTGGRQDPGKTFKNKKMPG 164 HSP 2 Score: 45.4394 bits (106), Expect = 1.216e-37 Identity = 23/53 (43.40%), Postives = 34/53 (64.15%), Query Frame = 3 Query: 693 QKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVXQKP 851 +KMPG MG + T N+ V + D R L+ V G VPG+ G ++ ++DAV +KP Sbjct: 160 KKMPGHMGVDRITTLNLRVVQTDVERGLLLVEGAVPGSKGGWITVRDAV-KKP 211
BLAST of DY257874 vs. ExPASy Swiss-Prot
Match: RL3_AZOC5 (50S ribosomal protein L3 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=rplC PE=3 SV=2) HSP 1 Score: 134.035 bits (336), Expect = 1.216e-37 Identity = 71/163 (43.56%), Postives = 95/163 (58.28%), Query Frame = 1 Query: 220 RTGLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 R+G+IA K G+T + G +PV+VL V+ V +T +K G+ ++Q+G G++K K+ K E G F V KRKL EF V DAL+P+G + HF+ GQYVD+ R F G+ ASHG S+SHRS+GSTG R PGK FK KK G Sbjct: 2 RSGVIAQKLGMTRIFTDAGEHLPVTVLKVESCQVVAHRTLDKNGYVAVQLGAGKRKPKNTNKAERGQFARAEVEPKRKLAEFRVDADALIPVGAEITADHFVVGQYVDVTGTTIGKGFAGGMKRHNFGGLRASHGVSISHRSIGSTGGRQDPGKTFKNKKMPG 164 HSP 2 Score: 45.0542 bits (105), Expect = 1.216e-37 Identity = 21/52 (40.38%), Postives = 32/52 (61.54%), Query Frame = 3 Query: 693 QKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVXQK 848 +KMPG MG T +N+ V D R L+ V G VPG +G ++ ++DAV ++ Sbjct: 160 KKMPGHMGDVTVTTQNLKVVMTDVERGLIAVEGAVPGHAGGWIMVRDAVKKR 211
BLAST of DY257874 vs. ExPASy Swiss-Prot
Match: RL3_RICRS (50S ribosomal protein L3 OS=Rickettsia rickettsii (strain Sheila Smith) GN=rplC PE=3 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 1.218e-37 Identity = 73/163 (44.79%), Postives = 96/163 (58.90%), Query Frame = 1 Query: 220 RTGLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 RTG+IA K G+T+ ++ G RI ++++ VDD V KT EK G+ +L +G KK +TKP F + K KL+EF ++E+ + I SL V HF GQ+VDI R F+G+ ASHG S+SHRS GSTGQR PGKVFKGKK G Sbjct: 2 RTGIIAQKIGMTSVFNDKGERISLTLVKVDDCQVVGHKTLEKHGYNALVIGVKDKKISRVTKPMRQVFANAKISPKTKLKEFRISEENFIDIAASLEVDHFTAGQFVDITATTIGKGFAGSMKRHNFRGLEASHGVSISHRSHGSTGQRQDPGKVFKGKKMAG 164 HSP 2 Score: 48.521 bits (114), Expect = 1.218e-37 Identity = 18/50 (36.00%), Postives = 34/50 (68.00%), Query Frame = 3 Query: 690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 839 G+KM G MG Q T++N+ ++ +D R L+ ++G +PG +++ +KDA+ Sbjct: 159 GKKMAGHMGCNQVTIQNLKIFAVDKERKLIMIQGSIPGHKNSYLSVKDAI 208
BLAST of DY257874 vs. ExPASy Swiss-Prot
Match: RL3_RICRO (50S ribosomal protein L3 OS=Rickettsia rickettsii (strain Iowa) GN=rplC PE=3 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 1.218e-37 Identity = 73/163 (44.79%), Postives = 96/163 (58.90%), Query Frame = 1 Query: 220 RTGLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 RTG+IA K G+T+ ++ G RI ++++ VDD V KT EK G+ +L +G KK +TKP F + K KL+EF ++E+ + I SL V HF GQ+VDI R F+G+ ASHG S+SHRS GSTGQR PGKVFKGKK G Sbjct: 2 RTGIIAQKIGMTSVFNDKGERISLTLVKVDDCQVVGHKTLEKHGYNALVIGVKDKKISRVTKPMRQVFANAKISPKTKLKEFRISEENFIDIAASLEVDHFTAGQFVDITATTIGKGFAGSMKRHNFRGLEASHGVSISHRSHGSTGQRQDPGKVFKGKKMAG 164 HSP 2 Score: 48.521 bits (114), Expect = 1.218e-37 Identity = 18/50 (36.00%), Postives = 34/50 (68.00%), Query Frame = 3 Query: 690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 839 G+KM G MG Q T++N+ ++ +D R L+ ++G +PG +++ +KDA+ Sbjct: 159 GKKMAGHMGCNQVTIQNLKIFAVDKERKLIMIQGSIPGHKNSYLSVKDAI 208 The following BLAST results are available for this feature:
BLAST of DY257874 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >DY257874 ID=DY257874; Name=DY257874; organism=Citrus clementina; type=EST; length=1221bpback to top |