DY257874

Overview
NameDY257874
Unique NameDY257874
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1221
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY257874 vs. ExPASy Swiss-Prot
Match: RL3_RALEH (50S ribosomal protein L3 OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=rplC PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.629e-27
Identity = 60/163 (36.81%), Postives = 83/163 (50.92%), Query Frame = 1 
Query:  226 GLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPV--TEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708
            GL+  K G+T  +   G  IPV+V+ V DN V+Q+KT E +G+ ++QV  G ++   +TKP  GH    GV     +REF +   + A L  G SL V  F  GQ +D+              R+ F    A+HG S SH   GS G    PG+VF GK+  G
Sbjct:    4 GLVGRKVGMTRIFTDDGEAIPVTVVEVGDNRVTQIKTDETDGYTAVQVTFGARRASRVTKPLAGHLAKAGVEAGEIIREFRIDAAKAAELQAGGSLSVDLFEVGQKIDVQGVTIGKGYAGTIKRYHFASGRATHGNSRSHNVPGSIGMAQDPGRVFPGKRMTG 166

HSP 2 Score: 45.4394 bits (106), Expect = 9.629e-27
Identity = 21/53 (39.62%), Postives = 32/53 (60.38%), Query Frame = 3 
Query:  690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVXQK 848
            G++M G +G   RTV+N+ + KID  R L+ V+G +PG+    V +  AV  K
Sbjct:  161 GKRMTGHLGDVTRTVQNLEIAKIDAERKLLLVKGAIPGSKNGKVIVTPAVKAK 213
[Close]
BLAST of DY257874 vs. ExPASy Swiss-Prot
Match: RL3_CUPTR (50S ribosomal protein L3 OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=rplC PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.629e-27
Identity = 60/163 (36.81%), Postives = 83/163 (50.92%), Query Frame = 1 
Query:  226 GLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPV--TEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708
            GL+  K G+T  +   G  IPV+V+ V DN V+Q+KT E +G+ ++QV  G ++   +TKP  GH    GV     +REF +   + A L  G SL V  F  GQ +D+              R+ F    A+HG S SH   GS G    PG+VF GK+  G
Sbjct:    4 GLVGRKVGMTRIFTDDGEAIPVTVVEVGDNRVTQIKTDETDGYTAVQVTFGARRASRVTKPLAGHLAKAGVEAGEIIREFRIDAAKAAELQAGGSLSVDLFEVGQKIDVQGVTIGKGYAGTIKRYHFASGRATHGNSRSHNVPGSIGMAQDPGRVFPGKRMTG 166

HSP 2 Score: 45.4394 bits (106), Expect = 9.629e-27
Identity = 21/53 (39.62%), Postives = 32/53 (60.38%), Query Frame = 3 
Query:  690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVXQK 848
            G++M G +G   RTV+N+ + KID  R L+ V+G +PG+    V +  AV  K
Sbjct:  161 GKRMTGHLGDVTRTVQNLEIAKIDAERKLLLVKGAIPGSKNGKVIVTPAVKAK 213
[Close]
BLAST of DY257874 vs. ExPASy Swiss-Prot
Match: RL3_XANOR (50S ribosomal protein L3 OS=Xanthomonas oryzae pv. oryzae GN=rplC PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 9.629e-27
Identity = 58/164 (35.37%), Postives = 86/164 (52.44%), Query Frame = 1 
Query:  226 GLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALL---PIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708
            G +  K G++  + + G  +PV+++    N ++Q+KT E +G+ ++Q+  G ++   + KP  GHF    V   R L EF V EDA L    +G  +    F  GQ VD+              R+ F+   A+HG SLSHR+ GS GQR  PG+VF GKK  G
Sbjct:    8 GFVGRKAGMSRIFTEDGRSVPVTLIEATPNRIAQIKTVEVDGYSAVQITVGARRAALVNKPAAGHFAKAKVEAGRGLWEFRV-EDAHLGDFAVGGEIKADIFEVGQKVDVQGVTKGKGFQGTIKRYNFRMGDATHGNSLSHRAPGSLGQRQTPGRVFPGKKMSG 170

HSP 2 Score: 46.595 bits (109), Expect = 9.629e-27
Identity = 21/49 (42.86%), Postives = 32/49 (65.31%), Query Frame = 3 
Query:  690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDA 836
            G+KM G MG  Q++ +N+ V K+D  R L+ + G VPGA+G  V ++ A
Sbjct:  165 GKKMSGHMGAVQQSTQNLEVVKVDVERGLIAIHGAVPGAAGGDVIVRPA 213
[Close]
BLAST of DY257874 vs. ExPASy Swiss-Prot
Match: RL3_XANOP (50S ribosomal protein L3 OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=rplC PE=3 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 9.629e-27
Identity = 58/164 (35.37%), Postives = 86/164 (52.44%), Query Frame = 1 
Query:  226 GLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALL---PIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708
            G +  K G++  + + G  +PV+++    N ++Q+KT E +G+ ++Q+  G ++   + KP  GHF    V   R L EF V EDA L    +G  +    F  GQ VD+              R+ F+   A+HG SLSHR+ GS GQR  PG+VF GKK  G
Sbjct:    8 GFVGRKAGMSRIFTEDGRSVPVTLIEATPNRIAQIKTVEVDGYSAVQITVGARRAALVNKPAAGHFAKAKVEAGRGLWEFRV-EDAHLGDFAVGGEIKADIFEVGQKVDVQGVTKGKGFQGTIKRYNFRMGDATHGNSLSHRAPGSLGQRQTPGRVFPGKKMSG 170

HSP 2 Score: 46.595 bits (109), Expect = 9.629e-27
Identity = 21/49 (42.86%), Postives = 32/49 (65.31%), Query Frame = 3 
Query:  690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDA 836
            G+KM G MG  Q++ +N+ V K+D  R L+ + G VPGA+G  V ++ A
Sbjct:  165 GKKMSGHMGAVQQSTQNLEVVKVDVERGLIAIHGAVPGAAGGDVIVRPA 213
[Close]
BLAST of DY257874 vs. ExPASy Swiss-Prot
Match: RL3_XANOM (50S ribosomal protein L3 OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=rplC PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 9.629e-27
Identity = 58/164 (35.37%), Postives = 86/164 (52.44%), Query Frame = 1 
Query:  226 GLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALL---PIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708
            G +  K G++  + + G  +PV+++    N ++Q+KT E +G+ ++Q+  G ++   + KP  GHF    V   R L EF V EDA L    +G  +    F  GQ VD+              R+ F+   A+HG SLSHR+ GS GQR  PG+VF GKK  G
Sbjct:    8 GFVGRKAGMSRIFTEDGRSVPVTLIEATPNRIAQIKTVEVDGYSAVQITVGARRAALVNKPAAGHFAKAKVEAGRGLWEFRV-EDAHLGDFAVGGEIKADIFEVGQKVDVQGVTKGKGFQGTIKRYNFRMGDATHGNSLSHRAPGSLGQRQTPGRVFPGKKMSG 170

HSP 2 Score: 46.595 bits (109), Expect = 9.629e-27
Identity = 21/49 (42.86%), Postives = 32/49 (65.31%), Query Frame = 3 
Query:  690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDA 836
            G+KM G MG  Q++ +N+ V K+D  R L+ + G VPGA+G  V ++ A
Sbjct:  165 GKKMSGHMGAVQQSTQNLEVVKVDVERGLIAIHGAVPGAAGGDVIVRPA 213
[Close]
BLAST of DY257874 vs. ExPASy Swiss-Prot
Match: RL3_YERE8 (50S ribosomal protein L3 OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=rplC PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.153e-26
Identity = 67/167 (40.12%), Postives = 89/167 (53.29%), Query Frame = 1 
Query:  226 GLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLGEWVESR 726
            GL+  K G+T  + + G  IPV+V+ ++ N V+QVK+ E +G+ ++QV  G KK   +TKPE GHF   GV   R L EF + E      G  + V  F   + VD+              RW F+   A+HG SLSHR  GS GQ   PGKVFKGKK  G   + R
Sbjct:    3 GLVGKKVGMTRIFTEDGVSIPVTVIEIEANRVTQVKSLENDGYRAVQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLPEGQEFTAGQEISVEIFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGHLGDER 169
[Close]
BLAST of DY257874 vs. ExPASy Swiss-Prot
Match: RL3_ENT38 (50S ribosomal protein L3 OS=Enterobacter sp. (strain 638) GN=rplC PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.153e-26
Identity = 67/167 (40.12%), Postives = 88/167 (52.69%), Query Frame = 1 
Query:  226 GLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLGEWVESR 726
            GL+  K G+T  + + G  IPV+V+ V+ N V+QVK    +G+ ++QV  G KK   +TKPE GHF   GV   R L EF + E     +G  + V  F   + VD+              RW F+   A+HG SLSHR  GS GQ   PGKVFKGKK  G+    R
Sbjct:    3 GLVGKKVGMTRIFTEDGVSIPVTVIEVEANRVTQVKDLANDGYRAVQVTTGSKKASRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQDISVELFAEVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNER 169
[Close]
BLAST of DY257874 vs. ExPASy Swiss-Prot
Match: RL3_BORPD (50S ribosomal protein L3 OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=rplC PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.251e-26
Identity = 59/171 (34.50%), Postives = 86/171 (50.29%), Query Frame = 1 
Query:  205 TDASKRTGLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPI--GTSLGVRH-FIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708
            T A+ R GL+  K G+T  + + G  IPV+VL V +N V+Q+K+ E +G+ ++QV  G ++   + +P+ GH+   G      L+EF +    L     G  + V   F  GQ VD+              R  F    ASHG S SHR  GS GQ   PG++F GK+  G
Sbjct:   11 TPAAHRLGLVGRKVGMTRIFTEEGESIPVTVLDVSNNRVTQIKSLEADGYAAVQVAYGTRRASRVAQPQTGHYAKAGTEAGSILKEFRLDPARLAEFTPGAVIAVESVFEAGQQVDVTGTTIGKGFAGTIKRHHFGSQRASHGNSRSHRVPGSIGQAQDPGRIFPGKRMSG 181

HSP 2 Score: 45.4394 bits (106), Expect = 1.251e-26
Identity = 20/50 (40.00%), Postives = 33/50 (66.00%), Query Frame = 3 
Query:  690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 839
            G++M G +G   RTV+N+ V ++D  R L+ V+G VPG +G  V ++ A+
Sbjct:  176 GKRMSGHLGDVTRTVQNLDVVRVDAERGLLLVKGAVPGHAGGDVVVRPAI 225
[Close]
BLAST of DY257874 vs. ExPASy Swiss-Prot
Match: RL3_POLSJ (50S ribosomal protein L3 OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=rplC PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.252e-26
Identity = 60/168 (35.71%), Postives = 78/168 (46.43%), Query Frame = 1 
Query:  214 SKRTGLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDAL--LPIGTSLGVRH-FIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708
            S   GL+  K G+   +   G  +PV+V+ V +N V+QVKT   +G+ +LQV  G +K   +TKP  GH    GV     L+EF VT D       GT +     F  GQ VD+              R       ASHG S SH   GS G    PG+VF GK+  G
Sbjct:    4 SNSLGLLGRKVGMMRLFTDDGDTVPVTVVDVSNNRVTQVKTEANDGYDALQVAFGARKASRVTKPAAGHLAKAGVEAGEILKEFRVTADVAGKYAAGTVVPAADVFAVGQLVDVQGTSIGKGYAGTIKRHNMSSQRASHGNSRSHNVPGSIGMAQDPGRVFPGKRMTG 171

HSP 2 Score: 51.2174 bits (121), Expect = 1.252e-26
Identity = 22/54 (40.74%), Postives = 35/54 (64.81%), Query Frame = 3 
Query:  690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVXQKP 851
            G++M G +G    T +N+ + +ID AR L+ +RG VPG+ G FV ++ A+  KP
Sbjct:  166 GKRMTGHLGDVTVTTQNLNIVRIDEARQLLMIRGAVPGSKGGFVTVRAAIKAKP 219
[Close]
BLAST of DY257874 vs. ExPASy Swiss-Prot
Match: RL3_RALEJ (50S ribosomal protein L3 OS=Ralstonia eutropha (strain JMP134) GN=rplC PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.253e-26
Identity = 60/163 (36.81%), Postives = 83/163 (50.92%), Query Frame = 1 
Query:  226 GLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPV--TEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708
            GL+  K G+T  +   G  IPV+V+ V DN V+Q+KT E +G+ ++QV  G ++   +TKP  GH    GV     +REF +   + A L  G SL V  F  GQ +D+              R+ F    A+HG S SH   GS G    PG+VF GK+  G
Sbjct:    4 GLVGRKVGMTRIFTDDGDSIPVTVVEVGDNRVTQIKTDETDGYTAVQVTFGARRASRVTKPLAGHLAKAGVEAGEIIREFRIDAAKAAELQTGGSLSVDLFEVGQKIDVQGVTIGKGYAGTIKRYHFASGRATHGNSRSHNVPGSIGMAQDPGRVFPGKRMTG 166

HSP 2 Score: 45.4394 bits (106), Expect = 1.253e-26
Identity = 21/53 (39.62%), Postives = 32/53 (60.38%), Query Frame = 3 
Query:  690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVXQK 848
            G++M G +G   RTV+N+ + KID  R L+ V+G +PG+    V +  AV  K
Sbjct:  161 GKRMTGHLGDVTRTVQNLEIAKIDAERKLLLVKGAIPGSKNGKVIVTPAVKAK 213
The following BLAST results are available for this feature:
BLAST of DY257874 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL3_RALEH9.629e-2736.8150S ribosomal protein L3 OS=Ralstonia eutropha (st... [more]
RL3_CUPTR9.629e-2736.8150S ribosomal protein L3 OS=Cupriavidus taiwanensi... [more]
RL3_XANOR9.629e-2735.3750S ribosomal protein L3 OS=Xanthomonas oryzae pv.... [more]
RL3_XANOP9.629e-2735.3750S ribosomal protein L3 OS=Xanthomonas oryzae pv.... [more]
RL3_XANOM9.629e-2735.3750S ribosomal protein L3 OS=Xanthomonas oryzae pv.... [more]
RL3_YERE81.153e-2640.1250S ribosomal protein L3 OS=Yersinia enterocolitic... [more]
RL3_ENT381.153e-2640.1250S ribosomal protein L3 OS=Enterobacter sp. (stra... [more]
RL3_BORPD1.251e-2634.5050S ribosomal protein L3 OS=Bordetella petrii (str... [more]
RL3_POLSJ1.252e-2635.7150S ribosomal protein L3 OS=Polaromonas sp. (strai... [more]
RL3_RALEJ1.253e-2636.8150S ribosomal protein L3 OS=Ralstonia eutropha (st... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1DH04ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257874 ID=DY257874; Name=DY257874; organism=Citrus clementina; type=EST; length=1221bp
GCGGGGCCGTTATCACGAGGCCCGCTCATTCAGCGGCTCCACCAACTCCT
ACATTTATCCCCTCTCAAGACCCCATCATATTCACATTCATCCCCTTACA
TCTTCTTCATCAGCAGATTCAGCACAGACTCCGCCTTCGCTGCTGCCTCC
GAGATCGATGAGGAGCACGCCTCCAGAATCATTGAAGCTAAGCCGGGCGT
CATGACTGATGCCTCCAAACGCACCGGGCTTATTGCCGTCAAGTGTGGAA
TAACCGCCACCTGGGATAAATGGGGCGCCAGGATTCCCGTCTCTGTGCTT
TTTGTCGATGATAATATCGTCTCTCAAGTTAAAACCTTTGAGAAAGAAGG
TTTCTTTTCCTTGCAGGTTGGATGCGGGCAGAAGAAGGATAAACATATGA
CAAAACCTGAAGTGGGTCATTTTAGAGCTCAAGGTGTTCCACTGAAGAGG
AAATTGCGGGAGTTTCCTGTCACAGAAGATGCACTTCTCCCCATTGGCAC
ATCACTTGGAGTTCGTCATTTTATTCCTGGCCAATACGTTGATATCACGG
GTACCACGAAAGGGAAAGGTTTTCAGGGTGGAATGAAAAGATGGGGATTT
AAAGGAATGCCAGCATCTCATGGTGCATCATTATCGCATCGAAGTCTTGG
TTCTACCGGTCAGAGGGATGCTCCTGGCAAGGTATTTAAGGGCAAAAAAT
GCCTGGGCGAATGGGTGGAAAGCAGAGAACCGTAAAAAATGTATGGGTAT
ACAAAATAGATCCAGCAAGGAATTTGATGTGGGTGAGAGGCCAGGTGCCA
GGTGCTTCAGGAAACTTTGTATTTATAAAGGATGCTGTTTANCAGAAACC
TGATGTTAAACTGCTCCCATTCCCACATACTTTGCAGCAAAAGACGAGAA
AATGGAGGGATTGGGAACCTCTGGTTGCTGATCTTGGTTGAAACGGGATC
ATTTATGACGGCAGATTGGGCTTTGTACGCAAATTCCTAAGAAGTAATAA
AGATTCGGTGTCTCCCTTCCAAAGGGGTAGGGTACCCAACGGGAAGTGGG
CTCTTCTTTTTTGGGGGGTGAAAACGGGAAAAAGCGGGGGGTGGTCGGTT
AAAATTTCCCCCCTTTTTTAATTTATAAATGGGAATGGCGGCGGGGGAAA
AAAGGGTAATTTTTTTCCCGGGGGGGTTTAAAATTCTGGAATTTTTGAAA
AGGGGATGGGGAATTTTTAAT
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