DY257874
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY257874 vs. ExPASy Swiss-Prot
Match: RL3_CLOTH (50S ribosomal protein L3 OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=rplC PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 7.940e-26 Identity = 53/161 (32.92%), Postives = 80/161 (49.69%), Query Frame = 1 Query: 229 LIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRH-FIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 ++ K G+T +D+ G IPV+V+ V Q K E +G+ S++V G ++K + KPE G F G+ K+ +REF V + + + V F PG VD+ R+G + +HG S+ HR +GS G P +VFKGKK G Sbjct: 5 MLGRKIGMTQVFDEDGLLIPVTVIEAGPITVVQKKKPETDGYNSVRVAFGDVQEKRLNKPEKGLFAKLGIAPKKYIREFRVDDPDKYELKQEIKVEEMFQPGDRVDVTGISKGKGFAGVIKRFGNRRGKETHG-SMYHRRVGSMGANTNPARVFKGKKLPG 164 HSP 2 Score: 57.7658 bits (138), Expect = 7.940e-26 Identity = 27/50 (54.00%), Postives = 36/50 (72.00%), Query Frame = 3 Query: 690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 839 G+K+PG MG ++ TV+N+ V K+D RNLM V+G VPGA G + IKD V Sbjct: 159 GKKLPGHMGVERVTVQNLDVVKVDAERNLMLVKGAVPGAKGGLLMIKDTV 208
BLAST of DY257874 vs. ExPASy Swiss-Prot
Match: RL3_ANAVT (50S ribosomal protein L3 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rplC PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 7.943e-26 Identity = 52/161 (32.30%), Postives = 83/161 (51.55%), Query Frame = 1 Query: 226 GLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 G++ K G+T +D+ G IPV+V+ V +V+QVK+ + +G+ ++QVG G+ K K + +P +GH P R L+E+ + +G + F G+ VD+ R F P SHG S +HR+ GS G PG+V+ GK+ G Sbjct: 4 GILGTKLGMTQIFDEAGVAIPVTVVQVGPCVVTQVKSKQTDGYAAIQVGYGEVKPKALNRPLLGHLAKSSAPALRHLKEYHTDSSSDYALGQEIKADIFSAGELVDVIGTSIGRGFAGNQKRNNFGRGPMSHG-SKNHRAPGSIGAGTTPGRVYPGKRMAG 163 HSP 2 Score: 45.8246 bits (107), Expect = 7.943e-26 Identity = 19/49 (38.78%), Postives = 33/49 (67.35%), Query Frame = 3 Query: 690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDA 836 G++M GR+GG + T++ + V ++D RNL+ ++G VPG G+ + I A Sbjct: 158 GKRMAGRLGGTRVTIRKLTVIRVDAERNLLLIKGAVPGKPGSLLSIVPA 206
BLAST of DY257874 vs. ExPASy Swiss-Prot
Match: RL3_CLOPH (50S ribosomal protein L3 OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=rplC PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 7.943e-26 Identity = 55/164 (33.54%), Postives = 80/164 (48.78%), Query Frame = 1 Query: 220 RTGLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLGE 711 + ++A K G+T +++ G PV+VL V+QVKT + +G+ ++QVG G ++ + KP+ GHF GV KR L+EF A +G + V F G +D R G P HG+ HR GS G PG+VFKGK G+ Sbjct: 2 KKAILATKIGMTQIFNENGVLTPVTVLQAGPCAVTQVKTVDNDGYAAVQVGFGDIRETLVNKPQKGHFAKAGVANKRFLKEFRFENAADYTVGQEIKVDIFTAGDKIDATGTSKGKGFQGAIKRHGLSRGPMGHGSKF-HRHAGSNGAATTPGRVFKGKHMPGQ 164 HSP 2 Score: 46.2098 bits (108), Expect = 7.943e-26 Identity = 22/50 (44.00%), Postives = 32/50 (64.00%), Query Frame = 3 Query: 690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 839 G+ MPG+MG + TV+N+ V KID NL+ V+G VPG + +K+ V Sbjct: 158 GKHMPGQMGNVKVTVQNLEVVKIDVDNNLILVKGAVPGPKKAMIMLKETV 207
BLAST of DY257874 vs. ExPASy Swiss-Prot
Match: RL3_GEOSF (50S ribosomal protein L3 OS=Geobacter sp. (strain FRC-32) GN=rplC PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 7.943e-26 Identity = 58/162 (35.80%), Postives = 76/162 (46.91%), Query Frame = 1 Query: 226 GLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLGE 711 GLI K G+T + G RIPV+V+ +V Q KT EK+G+ ++QVG K+ VGH +A G RE V +G L F G +D+ RWGFKG +SHG S HR+ GS G P +VFK KK G+ Sbjct: 4 GLIGKKIGMTQIFADDGRRIPVTVVEAGPCVVIQKKTKEKDGYNAIQVGFDAKEAAKANSATVGHCKAAGSGAFSFFRELRVDNVDSYNVGDVLNADLFAAGDVIDVTGTSIGKGFQGVIKRWGFKGGRSSHG-SRFHRAPGSIGCSATPSRVFKNKKMPGQ 164 HSP 2 Score: 51.6026 bits (122), Expect = 7.943e-26 Identity = 23/52 (44.23%), Postives = 37/52 (71.15%), Query Frame = 3 Query: 693 QKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVXQK 848 +KMPG++G ++ TV+ + V ++D A NL+ V G +PG++ VFIKD+V K Sbjct: 159 KKMPGQLGNERVTVQRLKVVRVDAADNLILVGGAIPGSTNGLVFIKDSVKAK 210
BLAST of DY257874 vs. ExPASy Swiss-Prot
Match: RL3_BACSU (50S ribosomal protein L3 OS=Bacillus subtilis GN=rplC PE=3 SV=2) HSP 1 Score: 80.8777 bits (198), Expect = 7.943e-26 Identity = 54/157 (34.39%), Postives = 76/157 (48.41%), Query Frame = 1 Query: 226 GLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGK 696 G++ K G+T + + G IPV+V+ N+V Q KT E +G+ ++Q+G K++K KPE GH KR ++E E +G + V F G+ VD+ R G P SHG S HR GS G D P +VFKGK Sbjct: 4 GILGRKIGMTQVFAENGDLIPVTVIEAAPNVVLQKKTAENDGYEAIQLGFDDKREKLSNKPEKGHVAKAETAPKRFVKELRGVEMDAYEVGQEVKVEIFSAGEIVDVTGVSKGKGFQGAIKRHGQSRGPMSHG-SRYHRRPGSMGPVD-PNRVFKGK 158 HSP 2 Score: 58.5362 bits (140), Expect = 7.943e-26 Identity = 25/53 (47.17%), Postives = 38/53 (71.70%), Query Frame = 3 Query: 690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVXQK 848 G+ +PGRMGG+Q TV+N+ + K+D RNL+ ++G VPGA + + +K AV K Sbjct: 157 GKLLPGRMGGEQITVQNLEIVKVDAERNLLLIKGNVPGAKKSLITVKSAVKSK 209
BLAST of DY257874 vs. ExPASy Swiss-Prot
Match: RK3A_ARATH (50S ribosomal protein L3-1, chloroplastic OS=Arabidopsis thaliana GN=RPL3A PE=1 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 1.027e-25 Identity = 62/206 (30.10%), Postives = 106/206 (51.46%), Query Frame = 1 Query: 109 ISRFSTDSAFAAASEIDEEHASRIIEAKPG----VMTDASKRTGLIAVKCGITATWDKWGARIPVSVL-FVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTE-DALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 +++ + S+ + + + +S +I++ P V + G++ K G+ + +++ G +PV+V+ F + NIV+Q+KT +G+ ++Q+G + +DK +TKPE GH + G R L+EF +T + P + F G VD+ R FK +HG S SHR+LGS G PG+V+KGKK G Sbjct: 14 LNKTTLSSSLFTPTFLPAKSSSLLIKSSPKTRFVVSSSMEAGIGVMGSKLGMMSFFEEDGTVVPVTVVGFREGNIVTQIKTLATDGYDAVQIGYRRVRDKKLTKPETGHLQKAGTIPMRHLQEFRLTNIEGFEPNQKLVFDEIFKEGDLVDVAGTTIGKGFQGGIKRHHFKRGQMTHG-SKSHRALGSIGAGTTPGRVYKGKKMPG 218 HSP 2 Score: 46.9802 bits (110), Expect = 1.027e-25 Identity = 19/49 (38.78%), Postives = 32/49 (65.31%), Query Frame = 3 Query: 690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDA 836 G+KMPGRMGG + ++ + + K+D N++ ++G +PG GN + I A Sbjct: 213 GKKMPGRMGGTRTKIRKLKIVKVDKELNVVMIKGALPGKPGNLLRITPA 261
BLAST of DY257874 vs. ExPASy Swiss-Prot
Match: RL3_BACHK (50S ribosomal protein L3 OS=Bacillus thuringiensis subsp. konkukian GN=rplC PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 1.034e-25 Identity = 57/161 (35.40%), Postives = 80/161 (49.69%), Query Frame = 1 Query: 226 GLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 G++ K G+T + + G IPV+V+ + N+V Q KT E +G+ ++Q+G K++K KPE GH KR +RE + L +G + V F G+ VD+ R G P SHG S HR GS G AP +VFKGKK G Sbjct: 4 GILGRKIGMTQVFAENGELIPVTVIAANPNVVLQKKTTETDGYNAIQLGFEDKREKLTNKPEQGHTAKASTTPKRFIREIRDADVDGLEVGQEVKVDVFATGEIVDVTGISKGKGFQGVIKRHGQSRGPMSHG-SRYHRRPGSMGP-VAPNRVFKGKKLAG 162 HSP 2 Score: 53.1434 bits (126), Expect = 1.034e-25 Identity = 23/50 (46.00%), Postives = 36/50 (72.00%), Query Frame = 3 Query: 690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 839 G+K+ GRMGG Q T++N+ + ++D RNL+ V+G VPGA + V ++ AV Sbjct: 157 GKKLAGRMGGDQVTIQNLEIVQVDTERNLLLVKGNVPGAKKSLVVVQGAV 206
BLAST of DY257874 vs. ExPASy Swiss-Prot
Match: RL3_BACCZ (50S ribosomal protein L3 OS=Bacillus cereus (strain ZK / E33L) GN=rplC PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 1.034e-25 Identity = 57/161 (35.40%), Postives = 80/161 (49.69%), Query Frame = 1 Query: 226 GLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 G++ K G+T + + G IPV+V+ + N+V Q KT E +G+ ++Q+G K++K KPE GH KR +RE + L +G + V F G+ VD+ R G P SHG S HR GS G AP +VFKGKK G Sbjct: 4 GILGRKIGMTQVFAENGELIPVTVIAANPNVVLQKKTTETDGYNAIQLGFEDKREKLTNKPEQGHTAKASTTPKRFIREIRDADVDGLEVGQEVKVDVFATGEIVDVTGISKGKGFQGVIKRHGQSRGPMSHG-SRYHRRPGSMGP-VAPNRVFKGKKLAG 162 HSP 2 Score: 53.1434 bits (126), Expect = 1.034e-25 Identity = 23/50 (46.00%), Postives = 36/50 (72.00%), Query Frame = 3 Query: 690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 839 G+K+ GRMGG Q T++N+ + ++D RNL+ V+G VPGA + V ++ AV Sbjct: 157 GKKLAGRMGGDQVTIQNLEIVQVDTERNLLLVKGNVPGAKKSLVVVQGAV 206
BLAST of DY257874 vs. ExPASy Swiss-Prot
Match: RL3_BACCR (50S ribosomal protein L3 OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=rplC PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 1.034e-25 Identity = 57/161 (35.40%), Postives = 80/161 (49.69%), Query Frame = 1 Query: 226 GLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 G++ K G+T + + G IPV+V+ + N+V Q KT E +G+ ++Q+G K++K KPE GH KR +RE + L +G + V F G+ VD+ R G P SHG S HR GS G AP +VFKGKK G Sbjct: 4 GILGRKIGMTQVFAENGELIPVTVIAANPNVVLQKKTTETDGYNAIQLGFEDKREKLTNKPEQGHTAKASTTPKRFIREIRDADVDGLEVGQEVKVDVFATGEIVDVTGISKGKGFQGVIKRHGQSRGPMSHG-SRYHRRPGSMGP-VAPNRVFKGKKLAG 162 HSP 2 Score: 53.1434 bits (126), Expect = 1.034e-25 Identity = 23/50 (46.00%), Postives = 36/50 (72.00%), Query Frame = 3 Query: 690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 839 G+K+ GRMGG Q T++N+ + ++D RNL+ V+G VPGA + V ++ AV Sbjct: 157 GKKLAGRMGGDQVTIQNLEIVQVDTERNLLLVKGNVPGAKKSLVVVQGAV 206
BLAST of DY257874 vs. ExPASy Swiss-Prot
Match: RL3_BACCQ (50S ribosomal protein L3 OS=Bacillus cereus (strain Q1) GN=rplC PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 1.034e-25 Identity = 57/161 (35.40%), Postives = 80/161 (49.69%), Query Frame = 1 Query: 226 GLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 G++ K G+T + + G IPV+V+ + N+V Q KT E +G+ ++Q+G K++K KPE GH KR +RE + L +G + V F G+ VD+ R G P SHG S HR GS G AP +VFKGKK G Sbjct: 4 GILGRKIGMTQVFAENGELIPVTVIAANPNVVLQKKTTETDGYNAIQLGFEDKREKLTNKPEQGHTAKASTTPKRFIREIRDADVDGLEVGQEVKVDVFATGEIVDVTGISKGKGFQGVIKRHGQSRGPMSHG-SRYHRRPGSMGP-VAPNRVFKGKKLAG 162 HSP 2 Score: 53.1434 bits (126), Expect = 1.034e-25 Identity = 23/50 (46.00%), Postives = 36/50 (72.00%), Query Frame = 3 Query: 690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 839 G+K+ GRMGG Q T++N+ + ++D RNL+ V+G VPGA + V ++ AV Sbjct: 157 GKKLAGRMGGDQVTIQNLEIVQVDTERNLLLVKGNVPGAKKSLVVVQGAV 206 The following BLAST results are available for this feature:
BLAST of DY257874 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >DY257874 ID=DY257874; Name=DY257874; organism=Citrus clementina; type=EST; length=1221bpback to top |