DY257874
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY257874 vs. ExPASy Swiss-Prot
Match: RL3_DESAP (50S ribosomal protein L3 OS=Desulforudis audaxviator (strain MP104C) GN=rplC PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 7.005e-24 Identity = 49/161 (30.43%), Postives = 76/161 (47.20%), Query Frame = 1 Query: 226 GLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 G++ K G++ + G +PV+++ V Q KT + +G+ ++Q+G ++ K + +P GHF GV R LRE V + A +G L F G+ VD+ R GF P HG S HR G+ + P +VFKG+K G Sbjct: 7 GILGRKLGMSRFFTAEGVAVPVTLIEAGPCTVVQKKTPDTDGYSAVQLGFMEQPAKRVNRPLKGHFGRAGVKPSRFLRELRVADAADYEVGQVLKADLFDVGEIVDVVGTSKGKGFAGGIKRHGFHRGPMGHG-SKYHRRPGALAAK-GPARVFKGRKLPG 165 HSP 2 Score: 61.2326 bits (147), Expect = 7.005e-24 Identity = 27/50 (54.00%), Postives = 38/50 (76.00%), Query Frame = 3 Query: 690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 839 G+K+PGR+GG + TV+N+ + K+DP RNL+ VRG VPG G+ V +K AV Sbjct: 160 GRKLPGRLGGVRVTVQNLEIVKVDPERNLLAVRGAVPGIRGSLVVVKSAV 209
BLAST of DY257874 vs. ExPASy Swiss-Prot
Match: RL3_GEOBB (50S ribosomal protein L3 OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=rplC PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 7.008e-24 Identity = 54/162 (33.33%), Postives = 76/162 (46.91%), Query Frame = 1 Query: 226 GLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLGE 711 GLI K G+T + + G RI V+V+ +V Q K+ K+G+ ++QVG G K +VGH + G + RE + +G + F G VD+ RWGFKG +SHG S HR+ GS G P +VFK KK G+ Sbjct: 4 GLIGKKLGMTQIFAEDGRRIAVTVVEAGPCVVVQKKSVAKDGYSAIQVGFGAKDASRANAAQVGHCKGAGAGVFTHYRELRMDNTDAYKLGDVIEAAVFEEGDLVDVTGTSIGKGFAGVIKRWGFKGGRSSHG-SRFHRAPGSIGCSATPSRVFKNKKMPGQ 164 HSP 2 Score: 47.7506 bits (112), Expect = 7.008e-24 Identity = 21/52 (40.38%), Postives = 36/52 (69.23%), Query Frame = 3 Query: 693 QKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVXQK 848 +KMPG++G ++ TV+ + V ++D A NL+ + G +PG++ V IKD+V K Sbjct: 159 KKMPGQLGNEKVTVQRLKVVRVDAADNLILLGGAIPGSANGVVLIKDSVKAK 210
BLAST of DY257874 vs. ExPASy Swiss-Prot
Match: RL3_STRMU (50S ribosomal protein L3 OS=Streptococcus mutans GN=rplC PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 7.011e-24 Identity = 57/161 (35.40%), Postives = 77/161 (47.83%), Query Frame = 1 Query: 226 GLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 G++ K G+T + + G IPV+V+ N+V QVKT E +G+ ++QVG K++ KP GH KR +REF E L +G + V F G VD+ R G P +HG S HR GS G AP +VFKGK G Sbjct: 4 GILGKKVGMTQIFTESGEFIPVTVIEATPNVVLQVKTVETDGYEAVQVGFDDKREVLSNKPAKGHVAKADTAPKRFIREFKNIEG--LEVGQEITVEQFEAGDVVDVTGTTKGKGFQGAIKRHGQSRGPMAHG-SRYHRRPGSMGP-VAPNRVFKGKNLAG 160 HSP 2 Score: 49.6766 bits (117), Expect = 7.011e-24 Identity = 21/50 (42.00%), Postives = 35/50 (70.00%), Query Frame = 3 Query: 690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 839 G+ + GRMGG + TV+N+ V ++ P +N++ ++G VPGA + + IK AV Sbjct: 155 GKNLAGRMGGNRVTVQNLEVVQVVPEKNVILIKGNVPGAKKSLIIIKSAV 204
BLAST of DY257874 vs. ExPASy Swiss-Prot
Match: RK3_GRATL (50S ribosomal protein L3, chloroplastic OS=Gracilaria tenuistipitata var. liui GN=rpl3 PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 7.014e-24 Identity = 48/163 (29.45%), Postives = 76/163 (46.63%), Query Frame = 1 Query: 220 RTGLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 + GL+ K G+T +D G +PV++L + +++ +K E G+ ++Q+G + + K ++GH +PL + L+E+ V IG + V Q + + R F P SHG S +HR GS G PGKVF GKK G Sbjct: 2 KIGLLGKKIGMTQIFDPGGKALPVTILKLGPCLITDIKKMESHGYAAIQIGYVKVNGNKLNKAQIGHLNKYNMPLVKFLKEYKVASTENYQIGKWITVEDLSINQNISVSGTSIGKGFTGCIKRHNFSRGPMSHG-SKNHRQPGSIGAGTTPGKVFAGKKMAG 163 HSP 2 Score: 47.7506 bits (112), Expect = 7.014e-24 Identity = 23/46 (50.00%), Postives = 31/46 (67.39%), Query Frame = 3 Query: 690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFI 827 G+KM GRMGGK+ T++N+ + I NL+ V+G VPG GN V I Sbjct: 158 GKKMAGRMGGKKVTIQNLKIIDIKINNNLIIVKGSVPGKPGNIVSI 203
BLAST of DY257874 vs. ExPASy Swiss-Prot
Match: RL3_GEOSM (50S ribosomal protein L3 OS=Geobacter sp. (strain M21) GN=rplC PE=3 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 9.120e-24 Identity = 53/162 (32.72%), Postives = 76/162 (46.91%), Query Frame = 1 Query: 226 GLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLGE 711 GLI K G+T + + G RI V+V+ +V Q K+ K+G+ ++QVG G K ++GH + G + RE + +G + F G VD+ RWGFKG +SHG S HR+ GS G P +VFK KK G+ Sbjct: 4 GLIGKKLGMTQIFAEDGRRIAVTVVEAGPCVVVQKKSVAKDGYSAIQVGLGAKDASRANAAQIGHCKGAGAGVFTHYRELRMDNTDAYNLGDVIEAAVFEEGDLVDVTGTSIGKGFAGVIKRWGFKGGRSSHG-SRFHRAPGSIGCSATPSRVFKNKKMPGQ 164 HSP 2 Score: 47.7506 bits (112), Expect = 9.120e-24 Identity = 21/52 (40.38%), Postives = 36/52 (69.23%), Query Frame = 3 Query: 693 QKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVXQK 848 +KMPG++G ++ TV+ + V ++D A NL+ + G +PG++ V IKD+V K Sbjct: 159 KKMPGQLGNEKVTVQRLKVVRVDAADNLILLGGAIPGSANGVVLIKDSVKAK 210
BLAST of DY257874 vs. ExPASy Swiss-Prot
Match: RL3_LACGA (50S ribosomal protein L3 OS=Lactobacillus gasseri (strain ATCC 33323 / DSM 20243) GN=rplC PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 9.120e-24 Identity = 53/161 (32.92%), Postives = 74/161 (45.96%), Query Frame = 1 Query: 226 GLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 G++ K G+T + K G +PV+V+ N+V QVKT E +G+ ++QVG ++ KP GH KR +RE E +G+ + V F G VD+ RWG P +HG S HR GS G +V KGKK G Sbjct: 4 GILGRKVGMTQIFTKNGILVPVTVIEATPNVVLQVKTNESDGYEAVQVGYQDMREVLSNKPAKGHAAKAKTSPKRFIREIRDVELKDYEVGSEITVDSFSEGDVVDVTGTTRGHGTQGNIKRWGQSRGPETHG-SRYHRIPGSMG--SIINRVPKGKKLPG 161 HSP 2 Score: 57.3806 bits (137), Expect = 9.120e-24 Identity = 23/49 (46.94%), Postives = 37/49 (75.51%), Query Frame = 3 Query: 690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDA 836 G+K+PG MGGK+ TV+N+ + K+ P +N++ V+G VPGA + +F+K A Sbjct: 156 GKKLPGHMGGKKVTVQNLVIEKVVPEKNVLLVKGNVPGAKNSLIFVKSA 204
BLAST of DY257874 vs. ExPASy Swiss-Prot
Match: RL3_STRSY (50S ribosomal protein L3 OS=Streptococcus suis (strain 05ZYH33) GN=rplC PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 9.124e-24 Identity = 57/161 (35.40%), Postives = 77/161 (47.83%), Query Frame = 1 Query: 226 GLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 G++ K G+T + + G IPV+V+ N+V QVKT E +G+ ++QVG K++ KP GH KR +REF E L +G + V F G VD+ R G P +HG S HR GS G AP +VFKGK G Sbjct: 4 GILGKKVGMTQIFTESGEFIPVTVIEATPNVVLQVKTVETDGYAAVQVGFDDKREVLSNKPAKGHVAKANTAPKRFIREFKNIEG--LEVGQEITVETFAAGDVVDVTGTSKGKGFQGVIKRHGQSRGPMAHG-SRYHRRPGSMGP-VAPNRVFKGKNLAG 160 HSP 2 Score: 48.521 bits (114), Expect = 9.124e-24 Identity = 20/50 (40.00%), Postives = 35/50 (70.00%), Query Frame = 3 Query: 690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 839 G+ + GRMGG + T++N+ V ++ P +N++ ++G VPGA + + IK AV Sbjct: 155 GKNLAGRMGGNRVTIQNLEVVQVVPEKNVILIKGNVPGAKKSLITIKSAV 204
BLAST of DY257874 vs. ExPASy Swiss-Prot
Match: RL3_PSYCK (50S ribosomal protein L3 OS=Psychrobacter cryohalolentis (strain K5) GN=rplC PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 9.137e-24 Identity = 63/169 (37.28%), Postives = 91/169 (53.85%), Query Frame = 1 Query: 226 GLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDAL--LPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLGEWVESR 726 GL+ KCG+T + + GA IPV+V+ + N ++QVK + +G+ ++QV G ++D +T + GHF GV R + EF + L IG + F GQ VD+ R F A+HG S+SHR++GSTGQ +PGKVFKGKK G+ R Sbjct: 4 GLVGKKCGMTRVFTEAGASIPVTVVEISANRITQVKNTDVDGYQAIQVTTGTRRDSRVTAAQKGHFAKAGVAAGRGVWEFRANDSDLEGREIGGEILADLFEQGQMVDVTGNSKGKGFQGGVKRHNFSMQDATHGNSVSHRAIGSTGQNQSPGKVFKGKKMPGQMGNKR 172
BLAST of DY257874 vs. ExPASy Swiss-Prot
Match: RL3_PHYMT (50S ribosomal protein L3 OS=Phytoplasma mali (strain AT) GN=rplC PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 1.185e-23 Identity = 59/167 (35.33%), Postives = 86/167 (51.50%), Query Frame = 1 Query: 226 GLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLRE---FPVTEDAL--LPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLGE 711 G++ K G+T +D+ G+ IP++++ V DN++ Q + EK G+ S Q+G K++K TKP +GHF+ KR ++E P ++ L L +GTSL F PG VD+ R P SHG S HR GS G GK+ KGKK G+ Sbjct: 4 GILGRKIGMTQVFDEKGSLIPITIVDVSDNVILQQNSVEKNGYLSTQLGFSSKREKLSTKPALGHFKNAKTSPKRFIKEIRFLPGIKNELSELDLGTSLKTNLFQPGDIVDVIGISKGKGFSGSIKRHNQSEGPKSHG-SRYHRRPGSMG--PIKGKI-KGKKLPGQ 166 HSP 2 Score: 44.669 bits (104), Expect = 1.185e-23 Identity = 19/50 (38.00%), Postives = 32/50 (64.00%), Query Frame = 3 Query: 690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 839 G+K+PG+MG + T++N+ + ID + L ++G +PG FV IK A+ Sbjct: 160 GKKLPGQMGHQTVTLQNLKINSIDHEQELFLIKGSIPGPRKGFVMIKTAI 209
BLAST of DY257874 vs. ExPASy Swiss-Prot
Match: RL3_PROMA (50S ribosomal protein L3 OS=Prochlorococcus marinus GN=rplC PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.185e-23 Identity = 49/163 (30.06%), Postives = 82/163 (50.31%), Query Frame = 1 Query: 226 GLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLGEW 714 G++ K G++ +D+ G IPV+++ ++Q+K+ +G+ ++Q+ G ++K + KP GH G L R + E+ V + +G + V F GQ VD+ R GF P SHG S +HR GSTG PG+++ GK+ G + Sbjct: 4 GILGKKLGMSQFFDEKGRSIPVTLVEAGPCRITQLKSSATDGYSAVQIAFGAVREKLINKPFQGHLAKSGDDLLRYMSEYRVKDVGEFQLGAQITVGDFEEGQKVDVSGTSMGRGFSGYQKRHGFSRGPMSHG-SKNHREPGSTGAGTTPGRIYPGKRMAGRY 165 HSP 2 Score: 45.4394 bits (106), Expect = 1.185e-23 Identity = 18/49 (36.73%), Postives = 33/49 (67.35%), Query Frame = 3 Query: 690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDA 836 G++M GR GGK+ T + + + K+D +NL+ ++G +PG G+ + I+ A Sbjct: 158 GKRMAGRYGGKKITTRGLMIMKVDSDKNLLVIKGSLPGKPGSLLNIRPA 206 The following BLAST results are available for this feature:
BLAST of DY257874 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >DY257874 ID=DY257874; Name=DY257874; organism=Citrus clementina; type=EST; length=1221bpback to top |