DY257874

Overview
NameDY257874
Unique NameDY257874
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1221
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257874 vs. ExPASy Swiss-Prot
Match: RL3_DESAP (50S ribosomal protein L3 OS=Desulforudis audaxviator (strain MP104C) GN=rplC PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 7.005e-24
Identity = 49/161 (30.43%), Postives = 76/161 (47.20%), Query Frame = 1
Query:  226 GLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708
            G++  K G++  +   G  +PV+++      V Q KT + +G+ ++Q+G  ++  K + +P  GHF   GV   R LRE  V + A   +G  L    F  G+ VD+              R GF   P  HG S  HR  G+   +  P +VFKG+K  G
Sbjct:    7 GILGRKLGMSRFFTAEGVAVPVTLIEAGPCTVVQKKTPDTDGYSAVQLGFMEQPAKRVNRPLKGHFGRAGVKPSRFLRELRVADAADYEVGQVLKADLFDVGEIVDVVGTSKGKGFAGGIKRHGFHRGPMGHG-SKYHRRPGALAAK-GPARVFKGRKLPG 165          

HSP 2 Score: 61.2326 bits (147), Expect = 7.005e-24
Identity = 27/50 (54.00%), Postives = 38/50 (76.00%), Query Frame = 3
Query:  690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 839
            G+K+PGR+GG + TV+N+ + K+DP RNL+ VRG VPG  G+ V +K AV
Sbjct:  160 GRKLPGRLGGVRVTVQNLEIVKVDPERNLLAVRGAVPGIRGSLVVVKSAV 209          
BLAST of DY257874 vs. ExPASy Swiss-Prot
Match: RL3_GEOBB (50S ribosomal protein L3 OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=rplC PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 7.008e-24
Identity = 54/162 (33.33%), Postives = 76/162 (46.91%), Query Frame = 1
Query:  226 GLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLGE 711
            GLI  K G+T  + + G RI V+V+     +V Q K+  K+G+ ++QVG G K        +VGH +  G  +    RE  +       +G  +    F  G  VD+              RWGFKG  +SHG S  HR+ GS G    P +VFK KK  G+
Sbjct:    4 GLIGKKLGMTQIFAEDGRRIAVTVVEAGPCVVVQKKSVAKDGYSAIQVGFGAKDASRANAAQVGHCKGAGAGVFTHYRELRMDNTDAYKLGDVIEAAVFEEGDLVDVTGTSIGKGFAGVIKRWGFKGGRSSHG-SRFHRAPGSIGCSATPSRVFKNKKMPGQ 164          

HSP 2 Score: 47.7506 bits (112), Expect = 7.008e-24
Identity = 21/52 (40.38%), Postives = 36/52 (69.23%), Query Frame = 3
Query:  693 QKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVXQK 848
            +KMPG++G ++ TV+ + V ++D A NL+ + G +PG++   V IKD+V  K
Sbjct:  159 KKMPGQLGNEKVTVQRLKVVRVDAADNLILLGGAIPGSANGVVLIKDSVKAK 210          
BLAST of DY257874 vs. ExPASy Swiss-Prot
Match: RL3_STRMU (50S ribosomal protein L3 OS=Streptococcus mutans GN=rplC PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 7.011e-24
Identity = 57/161 (35.40%), Postives = 77/161 (47.83%), Query Frame = 1
Query:  226 GLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708
            G++  K G+T  + + G  IPV+V+    N+V QVKT E +G+ ++QVG   K++    KP  GH        KR +REF   E   L +G  + V  F  G  VD+              R G    P +HG S  HR  GS G   AP +VFKGK   G
Sbjct:    4 GILGKKVGMTQIFTESGEFIPVTVIEATPNVVLQVKTVETDGYEAVQVGFDDKREVLSNKPAKGHVAKADTAPKRFIREFKNIEG--LEVGQEITVEQFEAGDVVDVTGTTKGKGFQGAIKRHGQSRGPMAHG-SRYHRRPGSMGP-VAPNRVFKGKNLAG 160          

HSP 2 Score: 49.6766 bits (117), Expect = 7.011e-24
Identity = 21/50 (42.00%), Postives = 35/50 (70.00%), Query Frame = 3
Query:  690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 839
            G+ + GRMGG + TV+N+ V ++ P +N++ ++G VPGA  + + IK AV
Sbjct:  155 GKNLAGRMGGNRVTVQNLEVVQVVPEKNVILIKGNVPGAKKSLIIIKSAV 204          
BLAST of DY257874 vs. ExPASy Swiss-Prot
Match: RK3_GRATL (50S ribosomal protein L3, chloroplastic OS=Gracilaria tenuistipitata var. liui GN=rpl3 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 7.014e-24
Identity = 48/163 (29.45%), Postives = 76/163 (46.63%), Query Frame = 1
Query:  220 RTGLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708
            + GL+  K G+T  +D  G  +PV++L +   +++ +K  E  G+ ++Q+G  +     + K ++GH     +PL + L+E+ V       IG  + V      Q + +              R  F   P SHG S +HR  GS G    PGKVF GKK  G
Sbjct:    2 KIGLLGKKIGMTQIFDPGGKALPVTILKLGPCLITDIKKMESHGYAAIQIGYVKVNGNKLNKAQIGHLNKYNMPLVKFLKEYKVASTENYQIGKWITVEDLSINQNISVSGTSIGKGFTGCIKRHNFSRGPMSHG-SKNHRQPGSIGAGTTPGKVFAGKKMAG 163          

HSP 2 Score: 47.7506 bits (112), Expect = 7.014e-24
Identity = 23/46 (50.00%), Postives = 31/46 (67.39%), Query Frame = 3
Query:  690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFI 827
            G+KM GRMGGK+ T++N+ +  I    NL+ V+G VPG  GN V I
Sbjct:  158 GKKMAGRMGGKKVTIQNLKIIDIKINNNLIIVKGSVPGKPGNIVSI 203          
BLAST of DY257874 vs. ExPASy Swiss-Prot
Match: RL3_GEOSM (50S ribosomal protein L3 OS=Geobacter sp. (strain M21) GN=rplC PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 9.120e-24
Identity = 53/162 (32.72%), Postives = 76/162 (46.91%), Query Frame = 1
Query:  226 GLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLGE 711
            GLI  K G+T  + + G RI V+V+     +V Q K+  K+G+ ++QVG G K        ++GH +  G  +    RE  +       +G  +    F  G  VD+              RWGFKG  +SHG S  HR+ GS G    P +VFK KK  G+
Sbjct:    4 GLIGKKLGMTQIFAEDGRRIAVTVVEAGPCVVVQKKSVAKDGYSAIQVGLGAKDASRANAAQIGHCKGAGAGVFTHYRELRMDNTDAYNLGDVIEAAVFEEGDLVDVTGTSIGKGFAGVIKRWGFKGGRSSHG-SRFHRAPGSIGCSATPSRVFKNKKMPGQ 164          

HSP 2 Score: 47.7506 bits (112), Expect = 9.120e-24
Identity = 21/52 (40.38%), Postives = 36/52 (69.23%), Query Frame = 3
Query:  693 QKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVXQK 848
            +KMPG++G ++ TV+ + V ++D A NL+ + G +PG++   V IKD+V  K
Sbjct:  159 KKMPGQLGNEKVTVQRLKVVRVDAADNLILLGGAIPGSANGVVLIKDSVKAK 210          
BLAST of DY257874 vs. ExPASy Swiss-Prot
Match: RL3_LACGA (50S ribosomal protein L3 OS=Lactobacillus gasseri (strain ATCC 33323 / DSM 20243) GN=rplC PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 9.120e-24
Identity = 53/161 (32.92%), Postives = 74/161 (45.96%), Query Frame = 1
Query:  226 GLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708
            G++  K G+T  + K G  +PV+V+    N+V QVKT E +G+ ++QVG    ++    KP  GH        KR +RE    E     +G+ + V  F  G  VD+              RWG    P +HG S  HR  GS G      +V KGKK  G
Sbjct:    4 GILGRKVGMTQIFTKNGILVPVTVIEATPNVVLQVKTNESDGYEAVQVGYQDMREVLSNKPAKGHAAKAKTSPKRFIREIRDVELKDYEVGSEITVDSFSEGDVVDVTGTTRGHGTQGNIKRWGQSRGPETHG-SRYHRIPGSMG--SIINRVPKGKKLPG 161          

HSP 2 Score: 57.3806 bits (137), Expect = 9.120e-24
Identity = 23/49 (46.94%), Postives = 37/49 (75.51%), Query Frame = 3
Query:  690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDA 836
            G+K+PG MGGK+ TV+N+ + K+ P +N++ V+G VPGA  + +F+K A
Sbjct:  156 GKKLPGHMGGKKVTVQNLVIEKVVPEKNVLLVKGNVPGAKNSLIFVKSA 204          
BLAST of DY257874 vs. ExPASy Swiss-Prot
Match: RL3_STRSY (50S ribosomal protein L3 OS=Streptococcus suis (strain 05ZYH33) GN=rplC PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.124e-24
Identity = 57/161 (35.40%), Postives = 77/161 (47.83%), Query Frame = 1
Query:  226 GLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708
            G++  K G+T  + + G  IPV+V+    N+V QVKT E +G+ ++QVG   K++    KP  GH        KR +REF   E   L +G  + V  F  G  VD+              R G    P +HG S  HR  GS G   AP +VFKGK   G
Sbjct:    4 GILGKKVGMTQIFTESGEFIPVTVIEATPNVVLQVKTVETDGYAAVQVGFDDKREVLSNKPAKGHVAKANTAPKRFIREFKNIEG--LEVGQEITVETFAAGDVVDVTGTSKGKGFQGVIKRHGQSRGPMAHG-SRYHRRPGSMGP-VAPNRVFKGKNLAG 160          

HSP 2 Score: 48.521 bits (114), Expect = 9.124e-24
Identity = 20/50 (40.00%), Postives = 35/50 (70.00%), Query Frame = 3
Query:  690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 839
            G+ + GRMGG + T++N+ V ++ P +N++ ++G VPGA  + + IK AV
Sbjct:  155 GKNLAGRMGGNRVTIQNLEVVQVVPEKNVILIKGNVPGAKKSLITIKSAV 204          
BLAST of DY257874 vs. ExPASy Swiss-Prot
Match: RL3_PSYCK (50S ribosomal protein L3 OS=Psychrobacter cryohalolentis (strain K5) GN=rplC PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 9.137e-24
Identity = 63/169 (37.28%), Postives = 91/169 (53.85%), Query Frame = 1
Query:  226 GLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDAL--LPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLGEWVESR 726
            GL+  KCG+T  + + GA IPV+V+ +  N ++QVK  + +G+ ++QV  G ++D  +T  + GHF   GV   R + EF   +  L    IG  +    F  GQ VD+              R  F    A+HG S+SHR++GSTGQ  +PGKVFKGKK  G+    R
Sbjct:    4 GLVGKKCGMTRVFTEAGASIPVTVVEISANRITQVKNTDVDGYQAIQVTTGTRRDSRVTAAQKGHFAKAGVAAGRGVWEFRANDSDLEGREIGGEILADLFEQGQMVDVTGNSKGKGFQGGVKRHNFSMQDATHGNSVSHRAIGSTGQNQSPGKVFKGKKMPGQMGNKR 172          
BLAST of DY257874 vs. ExPASy Swiss-Prot
Match: RL3_PHYMT (50S ribosomal protein L3 OS=Phytoplasma mali (strain AT) GN=rplC PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.185e-23
Identity = 59/167 (35.33%), Postives = 86/167 (51.50%), Query Frame = 1
Query:  226 GLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLRE---FPVTEDAL--LPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLGE 711
            G++  K G+T  +D+ G+ IP++++ V DN++ Q  + EK G+ S Q+G   K++K  TKP +GHF+      KR ++E    P  ++ L  L +GTSL    F PG  VD+              R      P SHG S  HR  GS G     GK+ KGKK  G+
Sbjct:    4 GILGRKIGMTQVFDEKGSLIPITIVDVSDNVILQQNSVEKNGYLSTQLGFSSKREKLSTKPALGHFKNAKTSPKRFIKEIRFLPGIKNELSELDLGTSLKTNLFQPGDIVDVIGISKGKGFSGSIKRHNQSEGPKSHG-SRYHRRPGSMG--PIKGKI-KGKKLPGQ 166          

HSP 2 Score: 44.669 bits (104), Expect = 1.185e-23
Identity = 19/50 (38.00%), Postives = 32/50 (64.00%), Query Frame = 3
Query:  690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 839
            G+K+PG+MG +  T++N+ +  ID  + L  ++G +PG    FV IK A+
Sbjct:  160 GKKLPGQMGHQTVTLQNLKINSIDHEQELFLIKGSIPGPRKGFVMIKTAI 209          
BLAST of DY257874 vs. ExPASy Swiss-Prot
Match: RL3_PROMA (50S ribosomal protein L3 OS=Prochlorococcus marinus GN=rplC PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.185e-23
Identity = 49/163 (30.06%), Postives = 82/163 (50.31%), Query Frame = 1
Query:  226 GLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLGEW 714
            G++  K G++  +D+ G  IPV+++      ++Q+K+   +G+ ++Q+  G  ++K + KP  GH    G  L R + E+ V +     +G  + V  F  GQ VD+              R GF   P SHG S +HR  GSTG    PG+++ GK+  G +
Sbjct:    4 GILGKKLGMSQFFDEKGRSIPVTLVEAGPCRITQLKSSATDGYSAVQIAFGAVREKLINKPFQGHLAKSGDDLLRYMSEYRVKDVGEFQLGAQITVGDFEEGQKVDVSGTSMGRGFSGYQKRHGFSRGPMSHG-SKNHREPGSTGAGTTPGRIYPGKRMAGRY 165          

HSP 2 Score: 45.4394 bits (106), Expect = 1.185e-23
Identity = 18/49 (36.73%), Postives = 33/49 (67.35%), Query Frame = 3
Query:  690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDA 836
            G++M GR GGK+ T + + + K+D  +NL+ ++G +PG  G+ + I+ A
Sbjct:  158 GKRMAGRYGGKKITTRGLMIMKVDSDKNLLVIKGSLPGKPGSLLNIRPA 206          
The following BLAST results are available for this feature:
BLAST of DY257874 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL3_DESAP7.005e-2430.4350S ribosomal protein L3 OS=Desulforudis audaxviat... [more]
RL3_GEOBB7.008e-2433.3350S ribosomal protein L3 OS=Geobacter bemidjiensis... [more]
RL3_STRMU7.011e-2435.4050S ribosomal protein L3 OS=Streptococcus mutans G... [more]
RK3_GRATL7.014e-2429.4550S ribosomal protein L3, chloroplastic OS=Gracila... [more]
RL3_GEOSM9.120e-2432.7250S ribosomal protein L3 OS=Geobacter sp. (strain ... [more]
RL3_LACGA9.120e-2432.9250S ribosomal protein L3 OS=Lactobacillus gasseri ... [more]
RL3_STRSY9.124e-2435.4050S ribosomal protein L3 OS=Streptococcus suis (st... [more]
RL3_PSYCK9.137e-2437.2850S ribosomal protein L3 OS=Psychrobacter cryohalo... [more]
RL3_PHYMT1.185e-2335.3350S ribosomal protein L3 OS=Phytoplasma mali (stra... [more]
RL3_PROMA1.185e-2330.0650S ribosomal protein L3 OS=Prochlorococcus marinu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1DH04ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257874 ID=DY257874; Name=DY257874; organism=Citrus clementina; type=EST; length=1221bp
GCGGGGCCGTTATCACGAGGCCCGCTCATTCAGCGGCTCCACCAACTCCT
ACATTTATCCCCTCTCAAGACCCCATCATATTCACATTCATCCCCTTACA
TCTTCTTCATCAGCAGATTCAGCACAGACTCCGCCTTCGCTGCTGCCTCC
GAGATCGATGAGGAGCACGCCTCCAGAATCATTGAAGCTAAGCCGGGCGT
CATGACTGATGCCTCCAAACGCACCGGGCTTATTGCCGTCAAGTGTGGAA
TAACCGCCACCTGGGATAAATGGGGCGCCAGGATTCCCGTCTCTGTGCTT
TTTGTCGATGATAATATCGTCTCTCAAGTTAAAACCTTTGAGAAAGAAGG
TTTCTTTTCCTTGCAGGTTGGATGCGGGCAGAAGAAGGATAAACATATGA
CAAAACCTGAAGTGGGTCATTTTAGAGCTCAAGGTGTTCCACTGAAGAGG
AAATTGCGGGAGTTTCCTGTCACAGAAGATGCACTTCTCCCCATTGGCAC
ATCACTTGGAGTTCGTCATTTTATTCCTGGCCAATACGTTGATATCACGG
GTACCACGAAAGGGAAAGGTTTTCAGGGTGGAATGAAAAGATGGGGATTT
AAAGGAATGCCAGCATCTCATGGTGCATCATTATCGCATCGAAGTCTTGG
TTCTACCGGTCAGAGGGATGCTCCTGGCAAGGTATTTAAGGGCAAAAAAT
GCCTGGGCGAATGGGTGGAAAGCAGAGAACCGTAAAAAATGTATGGGTAT
ACAAAATAGATCCAGCAAGGAATTTGATGTGGGTGAGAGGCCAGGTGCCA
GGTGCTTCAGGAAACTTTGTATTTATAAAGGATGCTGTTTANCAGAAACC
TGATGTTAAACTGCTCCCATTCCCACATACTTTGCAGCAAAAGACGAGAA
AATGGAGGGATTGGGAACCTCTGGTTGCTGATCTTGGTTGAAACGGGATC
ATTTATGACGGCAGATTGGGCTTTGTACGCAAATTCCTAAGAAGTAATAA
AGATTCGGTGTCTCCCTTCCAAAGGGGTAGGGTACCCAACGGGAAGTGGG
CTCTTCTTTTTTGGGGGGTGAAAACGGGAAAAAGCGGGGGGTGGTCGGTT
AAAATTTCCCCCCTTTTTTAATTTATAAATGGGAATGGCGGCGGGGGAAA
AAAGGGTAATTTTTTTCCCGGGGGGGTTTAAAATTCTGGAATTTTTGAAA
AGGGGATGGGGAATTTTTAAT
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