DY257874
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY257874 vs. ExPASy Swiss-Prot
Match: RL3_SHEB8 (50S ribosomal protein L3 OS=Shewanella baltica (strain OS185) GN=rplC PE=3 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 9.768e-34 Identity = 69/163 (42.33%), Postives = 86/163 (52.76%), Query Frame = 1 Query: 226 GLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVT--EDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 GLI K G+T + + G IPV+V+ V N V+QVKT E +G+ +LQV G KK +TKPE GHF GV R L E + E + +G L V F VD+ RW F+ +HG SLSHRS GS GQ PG+VFKGKK G Sbjct: 4 GLIGRKVGMTRIFTEDGVSIPVTVIEVAGNRVTQVKTLETDGYRALQVTTGTKKANRITKPEAGHFAKSGVEAGRGLWEMRLVDGEGEGIEVGAELNVDIFADVAKVDVTGQSKGKGFQGGVKRWNFRTQDMTHGNSLSHRSNGSIGQNQTPGRVFKGKKMSG 166 HSP 2 Score: 50.0618 bits (118), Expect = 9.768e-34 Identity = 24/50 (48.00%), Postives = 34/50 (68.00%), Query Frame = 3 Query: 690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 839 G+KM G MG ++ T +N+ V ++D RNL+ VRG VPGA+ + IK AV Sbjct: 161 GKKMSGHMGAERVTTQNLVVVRVDVERNLLLVRGAVPGATNGDLIIKPAV 210
BLAST of DY257874 vs. ExPASy Swiss-Prot
Match: RL3_SHEB5 (50S ribosomal protein L3 OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=rplC PE=3 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 9.768e-34 Identity = 69/163 (42.33%), Postives = 86/163 (52.76%), Query Frame = 1 Query: 226 GLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVT--EDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 GLI K G+T + + G IPV+V+ V N V+QVKT E +G+ +LQV G KK +TKPE GHF GV R L E + E + +G L V F VD+ RW F+ +HG SLSHRS GS GQ PG+VFKGKK G Sbjct: 4 GLIGRKVGMTRIFTEDGVSIPVTVIEVAGNRVTQVKTLETDGYRALQVTTGTKKANRITKPEAGHFAKSGVEAGRGLWEMRLVDGEGEGIEVGAELNVDIFADVAKVDVTGQSKGKGFQGGVKRWNFRTQDMTHGNSLSHRSNGSIGQNQTPGRVFKGKKMSG 166 HSP 2 Score: 50.0618 bits (118), Expect = 9.768e-34 Identity = 24/50 (48.00%), Postives = 34/50 (68.00%), Query Frame = 3 Query: 690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 839 G+KM G MG ++ T +N+ V ++D RNL+ VRG VPGA+ + IK AV Sbjct: 161 GKKMSGHMGAERVTTQNLVVVRVDVERNLLLVRGAVPGATNGDLIIKPAV 210
BLAST of DY257874 vs. ExPASy Swiss-Prot
Match: RL3_SHEB2 (50S ribosomal protein L3 OS=Shewanella baltica (strain OS223) GN=rplC PE=3 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 9.768e-34 Identity = 69/163 (42.33%), Postives = 86/163 (52.76%), Query Frame = 1 Query: 226 GLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVT--EDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 GLI K G+T + + G IPV+V+ V N V+QVKT E +G+ +LQV G KK +TKPE GHF GV R L E + E + +G L V F VD+ RW F+ +HG SLSHRS GS GQ PG+VFKGKK G Sbjct: 4 GLIGRKVGMTRIFTEDGVSIPVTVIEVAGNRVTQVKTLETDGYRALQVTTGTKKANRITKPEAGHFAKSGVEAGRGLWEMRLVDGEGEGIEVGAELNVDIFADVAKVDVTGQSKGKGFQGGVKRWNFRTQDMTHGNSLSHRSNGSIGQNQTPGRVFKGKKMSG 166 HSP 2 Score: 50.0618 bits (118), Expect = 9.768e-34 Identity = 24/50 (48.00%), Postives = 34/50 (68.00%), Query Frame = 3 Query: 690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 839 G+KM G MG ++ T +N+ V ++D RNL+ VRG VPGA+ + IK AV Sbjct: 161 GKKMSGHMGAERVTTQNLVVVRVDVERNLLLVRGAVPGATNGDLIIKPAV 210
BLAST of DY257874 vs. ExPASy Swiss-Prot
Match: RL3_CLAMS (50S ribosomal protein L3 OS=Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) GN=rplC PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.272e-33 Identity = 59/162 (36.42%), Postives = 84/162 (51.85%), Query Frame = 1 Query: 223 TGLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 TGL+ K G+T WD+ IPV+V+ + N+V+QV+T E +G+ ++Q+ GQ + KP GHF GV +R L E + A +G + V F PG VD+ R FKG+ ASHG+ +HR GS G P +VFKG + G Sbjct: 9 TGLLGTKLGMTQVWDENNKLIPVTVVQITPNVVTQVRTPEVDGYGAIQIAYGQIDPRKADKPSTGHFDKAGVTPRRHLTEVRTADFAEYTLGQEITVGAFEPGTKVDVVGTSKGKGFAGVMKRHNFKGVSASHGSHRNHRKPGSIGASSTPSRVFKGMRMAG 170 HSP 2 Score: 55.4546 bits (132), Expect = 1.272e-33 Identity = 25/53 (47.17%), Postives = 37/53 (69.81%), Query Frame = 3 Query: 690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVXQK 848 G +M GRMGG++ TV N+ V+ +D + L+ V+G VPGA G VF+++AV K Sbjct: 165 GMRMAGRMGGERVTVLNLVVHSVDAEKGLLLVKGAVPGARGRIVFVRNAVKGK 217
BLAST of DY257874 vs. ExPASy Swiss-Prot
Match: RL3_CLAM3 (50S ribosomal protein L3 OS=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) GN=rplC PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.272e-33 Identity = 59/162 (36.42%), Postives = 84/162 (51.85%), Query Frame = 1 Query: 223 TGLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 TGL+ K G+T WD+ IPV+V+ + N+V+QV+T E +G+ ++Q+ GQ + KP GHF GV +R L E + A +G + V F PG VD+ R FKG+ ASHG+ +HR GS G P +VFKG + G Sbjct: 9 TGLLGTKLGMTQVWDENNKLIPVTVVQITPNVVTQVRTPEVDGYGAIQIAYGQIDPRKADKPSTGHFDKAGVTPRRHLTEVRTADFAEYALGQEITVGAFEPGTKVDVVGTSKGKGFAGVMKRHNFKGVSASHGSHRNHRKPGSIGASSTPSRVFKGMRMAG 170 HSP 2 Score: 55.4546 bits (132), Expect = 1.272e-33 Identity = 25/53 (47.17%), Postives = 37/53 (69.81%), Query Frame = 3 Query: 690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVXQK 848 G +M GRMGG++ TV N+ V+ +D + L+ V+G VPGA G VF+++AV K Sbjct: 165 GMRMAGRMGGERVTVLNLVVHSVDAEKGLLLVKGAVPGARGRIVFVRNAVKGK 217
BLAST of DY257874 vs. ExPASy Swiss-Prot
Match: RL3_GRABC (50S ribosomal protein L3 OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=rplC PE=3 SV=1) HSP 1 Score: 144.436 bits (363), Expect = 1.272e-33 Identity = 76/169 (44.97%), Postives = 99/169 (58.58%), Query Frame = 1 Query: 220 RTGLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLGEWVESR 726 RTGLIA K G+T + + G +PV+VL +D V +T E++G+ ++Q+G GQ K KH++K GHF V K+KL EF V EDA+L G +L HF+ GQ VD+ RW F G+ ASHG S+SHRS GSTG R PGK FK KK G + R Sbjct: 2 RTGLIARKLGMTRLFKEDGTHVPVTVLHLDQVQVVDTRTKERDGYTAVQLGFGQAKPKHVSKANKGHFARVKVEPKKKLVEFRVAEDAILEPGATLSAEHFLVGQKVDVTGTSKGKGFAGAMKRWNFAGLEASHGVSISHRSHGSTGNRQDPGKTFKNKKMAGHLGDER 170
BLAST of DY257874 vs. ExPASy Swiss-Prot
Match: RL3_SHESW (50S ribosomal protein L3 OS=Shewanella sp. (strain W3-18-1) GN=rplC PE=3 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 1.657e-33 Identity = 69/163 (42.33%), Postives = 86/163 (52.76%), Query Frame = 1 Query: 226 GLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVT--EDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 GLI K G+T + + G IPV+V+ V N V+QVKT E +G+ +LQV G KK +TKPE GHF GV R L E + E + +G L V F VD+ RW F+ +HG SLSHRS GS GQ PG+VFKGKK G Sbjct: 4 GLIGRKVGMTRIFTEDGVSIPVTVIEVAGNRVTQVKTLETDGYRALQVTTGTKKANRITKPEAGHFAKSGVEAGRGLWEVRLEDGEGEGIEVGAELNVDIFADVAKVDVTGQSKGKGFQGGVKRWNFRTQDMTHGNSLSHRSNGSIGQNQTPGRVFKGKKMSG 166 HSP 2 Score: 50.0618 bits (118), Expect = 1.657e-33 Identity = 24/50 (48.00%), Postives = 34/50 (68.00%), Query Frame = 3 Query: 690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 839 G+KM G MG ++ T +N+ V ++D RNL+ VRG VPGA+ + IK AV Sbjct: 161 GKKMSGHMGAERVTTQNLVVVRVDVERNLLLVRGAVPGATNGDLIIKPAV 210
BLAST of DY257874 vs. ExPASy Swiss-Prot
Match: RL3_SHEPC (50S ribosomal protein L3 OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=rplC PE=3 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 1.657e-33 Identity = 69/163 (42.33%), Postives = 86/163 (52.76%), Query Frame = 1 Query: 226 GLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVT--EDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 GLI K G+T + + G IPV+V+ V N V+QVKT E +G+ +LQV G KK +TKPE GHF GV R L E + E + +G L V F VD+ RW F+ +HG SLSHRS GS GQ PG+VFKGKK G Sbjct: 4 GLIGRKVGMTRIFTEDGVSIPVTVIEVAGNRVTQVKTLETDGYRALQVTTGTKKANRITKPEAGHFAKSGVEAGRGLWEVRLEDGEGEGIEVGAELNVDIFADVAKVDVTGQSKGKGFQGGVKRWNFRTQDMTHGNSLSHRSNGSIGQNQTPGRVFKGKKMSG 166 HSP 2 Score: 50.0618 bits (118), Expect = 1.657e-33 Identity = 24/50 (48.00%), Postives = 34/50 (68.00%), Query Frame = 3 Query: 690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 839 G+KM G MG ++ T +N+ V ++D RNL+ VRG VPGA+ + IK AV Sbjct: 161 GKKMSGHMGAERVTTQNLVVVRVDVERNLLLVRGAVPGATNGDLIIKPAV 210
BLAST of DY257874 vs. ExPASy Swiss-Prot
Match: RL3_ARTAT (50S ribosomal protein L3 OS=Arthrobacter aurescens (strain TC1) GN=rplC PE=3 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 2.810e-33 Identity = 61/169 (36.09%), Postives = 87/169 (51.48%), Query Frame = 1 Query: 202 MTDASKRTGLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 MT GL+ K G+T WD+ IPV+V+ D N+++Q++ E +G+ ++Q+G GQ + +TKP GHF GV +R + E + A +G L V F GQ +D+ R GF G+ ASHGA +HR GS G P +VFKG K G Sbjct: 1 MTATRNVKGLLGTKLGMTQVWDENNKLIPVTVVQADSNVITQLRNAEVDGYVAVQIGYGQIDPRKVTKPLAGHFEKAGVTPRRHVVELRTADAASYELGQELSVEIFEAGQKIDVVGTSKGKGFAGVMKRHGFHGVGASHGAHKNHRKPGSIGGASTPSRVFKGLKMAG 169 HSP 2 Score: 49.2914 bits (116), Expect = 2.810e-33 Identity = 22/50 (44.00%), Postives = 33/50 (66.00%), Query Frame = 3 Query: 690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 839 G KM GRMG ++ T N+ V+ ID ++L+ ++G VPGA G V ++ AV Sbjct: 164 GLKMAGRMGAERHTTLNLTVHAIDAEKSLLLIKGAVPGARGQVVLVRTAV 213
BLAST of DY257874 vs. ExPASy Swiss-Prot
Match: RL3_CHRSD (50S ribosomal protein L3 OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=rplC PE=3 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 2.811e-33 Identity = 64/163 (39.26%), Postives = 91/163 (55.83%), Query Frame = 1 Query: 226 GLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLP-IGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLGE 711 GL+ K G+T + + GA +PV+V+ V+ N V++VKT E +G+ ++QV G +K KH+TK G + GV R L EF + E P +G ++ V F GQ VD+ RW F+ HG SL+HR+ GS GQ PG+VFKGKK G+ Sbjct: 4 GLVGKKSGMTRIFTENGASVPVTVIEVEPNRVTRVKTVESDGYSAVQVTSGSRKAKHLTKAAAGQYAKSGVEAGRSLMEFRLAEGEEAPEVGGNITVSLFEAGQKVDVTGTSKGKGFQGAVKRWNFRTQDNGHGNSLAHRAPGSIGQCQTPGRVFKGKKMAGQ 166 HSP 2 Score: 46.2098 bits (108), Expect = 2.811e-33 Identity = 20/50 (40.00%), Postives = 36/50 (72.00%), Query Frame = 3 Query: 690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 839 G+KM G++G ++ TV+++ + ++D RNL+ V+G VPGA+ V ++ AV Sbjct: 160 GKKMAGQLGNERVTVQSLEIVRVDAERNLLLVKGAVPGATDCEVIVRSAV 209 The following BLAST results are available for this feature:
BLAST of DY257874 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >DY257874 ID=DY257874; Name=DY257874; organism=Citrus clementina; type=EST; length=1221bpback to top |