DY257875

Overview
NameDY257875
Unique NameDY257875
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length484
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9786 contig Ccv1_Contig9786:4..487. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY257875 vs. ExPASy Swiss-Prot
Match: RS28_CAEEL (40S ribosomal protein S28 OS=Caenorhabditis elegans GN=rps-28 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.374e-11
Identity = 34/45 (75.56%), Postives = 40/45 (88.89%), Query Frame = 3 
Query:   96 AVVVKVMGRTGSRGQVTQVRVKFLDDQ-NRFIMRNVKGPVREGDI 227
            A V KV+GRTGS+GQ TQVRV+F++DQ NR I+RNVKGPVREGDI
Sbjct:    7 ARVTKVIGRTGSQGQCTQVRVEFINDQNNRSIIRNVKGPVREGDI 51
The following BLAST results are available for this feature:
BLAST of DY257875 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
RS28_CAEEL6.374e-1175.5640S ribosomal protein S28 OS=Caenorhabditis elegan... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1DH05ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257875 ID=DY257875; Name=DY257875; organism=Citrus clementina; type=EST; length=484bp
GGTTGCAAGAACTGCTGAAAGAAATTAGCAGCCGCTTCTGTCACCTTCTC
TCTCTTCTCGCCTCTTTGCTCAGAATGGATTCTCAGATTAAGCACGCTGT
GGTGGTGAAAGTCATGGGCCGCACTGGTTCAAGAGGACAGGTTACTCAAG
TGAGAGTCAAGTTTTTAGATGATCAGAACCGATTCATCATGAGGAATGTG
AAGGGACCCGTTAGAGAAGGTGATATCCTCACTTTGCTCGAGTCTGAGAG
AGAAGCTAGGAGGCTCCGTTGAAGAGTCCATCTCTGGTCATACTATCTCA
AACTTTTTGTTGGAAACTAGGGTTCATTACTGTTGTTTTTAGTAGGCTAG
TGATTGGCAATGTTATGAGTTTCACAACTTATTTTGAAGGTTTTCATATT
AAGACTGGGTTTTGAGCCATGAATTATATGTTTTGGGATGTTTAATATCG
TTCTCATTGAAATGGAGTTAAATTTGCTTTAAAG
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