DY257880

Overview
NameDY257880
Unique NameDY257880
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length649
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10061 contig Ccv1_Contig10061:4..652. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY257880 vs. ExPASy Swiss-Prot
Match: H33_CAPAN (Histone H3.3 OS=Capsicum annuum PE=2 SV=3)

HSP 1 Score: 266.159 bits (679), Expect = 1.078e-70
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1 
Query:   76 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 483
            MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of DY257880 vs. ExPASy Swiss-Prot
Match: H33_ARATH (Histone H3.3 OS=Arabidopsis thaliana GN=HTR4 PE=1 SV=2)

HSP 1 Score: 266.159 bits (679), Expect = 1.078e-70
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1 
Query:   76 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 483
            MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of DY257880 vs. ExPASy Swiss-Prot
Match: H33A_LILLO (Histone H3.3a OS=Lilium longiflorum GN=MPH3 PE=2 SV=3)

HSP 1 Score: 261.922 bits (668), Expect = 2.033e-69
Identity = 133/136 (97.79%), Postives = 135/136 (99.26%), Query Frame = 1 
Query:   76 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 483
            MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKST+LLIRKLPFQRLVREIAQD+K DLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTDLLIRKLPFQRLVREIAQDYKADLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of DY257880 vs. ExPASy Swiss-Prot
Match: H3_URECA (Histone H3 OS=Urechis caupo PE=1 SV=2)

HSP 1 Score: 257.684 bits (657), Expect = 3.835e-68
Identity = 131/136 (96.32%), Postives = 134/136 (98.53%), Query Frame = 1 
Query:   76 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 483
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of DY257880 vs. ExPASy Swiss-Prot
Match: H3_TIGCA (Histone H3 OS=Tigriopus californicus PE=3 SV=2)

HSP 1 Score: 257.684 bits (657), Expect = 3.835e-68
Identity = 131/136 (96.32%), Postives = 134/136 (98.53%), Query Frame = 1 
Query:   76 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 483
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of DY257880 vs. ExPASy Swiss-Prot
Match: H3_PLADU (Histone H3 OS=Platynereis dumerilii PE=3 SV=2)

HSP 1 Score: 257.684 bits (657), Expect = 3.835e-68
Identity = 131/136 (96.32%), Postives = 134/136 (98.53%), Query Frame = 1 
Query:   76 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 483
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of DY257880 vs. ExPASy Swiss-Prot
Match: H3_DROME (Histone H3 OS=Drosophila melanogaster GN=His3 PE=1 SV=4)

HSP 1 Score: 257.684 bits (657), Expect = 3.835e-68
Identity = 131/136 (96.32%), Postives = 134/136 (98.53%), Query Frame = 1 
Query:   76 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 483
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of DY257880 vs. ExPASy Swiss-Prot
Match: H3_DROHY (Histone H3 OS=Drosophila hydei GN=His3 PE=3 SV=2)

HSP 1 Score: 257.684 bits (657), Expect = 3.835e-68
Identity = 131/136 (96.32%), Postives = 134/136 (98.53%), Query Frame = 1 
Query:   76 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 483
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of DY257880 vs. ExPASy Swiss-Prot
Match: H3_CHITH (Histone H3 OS=Chironomus thummi thummi PE=3 SV=2)

HSP 1 Score: 257.684 bits (657), Expect = 3.835e-68
Identity = 131/136 (96.32%), Postives = 134/136 (98.53%), Query Frame = 1 
Query:   76 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 483
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of DY257880 vs. ExPASy Swiss-Prot
Match: H32_XENTR (Histone H3.2 OS=Xenopus tropicalis GN=TGas081o10.1 PE=2 SV=3)

HSP 1 Score: 257.684 bits (657), Expect = 3.835e-68
Identity = 131/136 (96.32%), Postives = 134/136 (98.53%), Query Frame = 1 
Query:   76 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 483
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
The following BLAST results are available for this feature:
BLAST of DY257880 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 212
Match NameE-valueIdentityDescription
H33_CAPAN1.078e-70100.00Histone H3.3 OS=Capsicum annuum PE=2 SV=3[more]
H33_ARATH1.078e-70100.00Histone H3.3 OS=Arabidopsis thaliana GN=HTR4 PE=1 ... [more]
H33A_LILLO2.033e-6997.79Histone H3.3a OS=Lilium longiflorum GN=MPH3 PE=2 S... [more]
H3_URECA3.835e-6896.32Histone H3 OS=Urechis caupo PE=1 SV=2[more]
H3_TIGCA3.835e-6896.32Histone H3 OS=Tigriopus californicus PE=3 SV=2[more]
H3_PLADU3.835e-6896.32Histone H3 OS=Platynereis dumerilii PE=3 SV=2[more]
H3_DROME3.835e-6896.32Histone H3 OS=Drosophila melanogaster GN=His3 PE=1... [more]
H3_DROHY3.835e-6896.32Histone H3 OS=Drosophila hydei GN=His3 PE=3 SV=2[more]
H3_CHITH3.835e-6896.32Histone H3 OS=Chironomus thummi thummi PE=3 SV=2[more]
H32_XENTR3.835e-6896.32Histone H3.2 OS=Xenopus tropicalis GN=TGas081o10.1... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1DH12ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257880 ID=DY257880; Name=DY257880; organism=Citrus clementina; type=EST; length=649bp
GGAATTTCTTTACGTTATTGAGGCGTTGCATTCAGATCTGTGCATTTTGC
AGTTTGTGTTGGTGATTAAAGAGTAATGGCCCGTACGAAGCAAACCGCGC
GCAAGTCAACTGGAGGAAAGGCTCCGAGGAAGCAGCTCGCCACAAAGGCT
GCAAGAAAATCTGCTCCAACAACTGGTGGAGTCAAGAAGCCCCATCGTTA
CCGTCCAGGAACTGTCGCCCTACGTGAAATCCGCAAATATCAAAAGAGCA
CTGAGCTTTTGATCCGCAAGCTGCCTTTCCAGCGGCTGGTTCGTGAAATT
GCTCAAGATTTCAAGACAGATTTGAGGTTCCAAAGCCACGCGGTTCTTGC
GCTGCAGGAAGCGGCAGAGGCTTATCTCGTGGGTCTGTTCGAGGACACCA
ACCTTTGTGCTATCCATGCCAAGCGAGTCACCATTATGCCCAAGGATATT
CAACTGGCAAGGCGAATCCGAGGCGAGCGTGCTTAATTTGTGATTCCTTA
GGTAGTCGTCAGTTTCCTATTTAGTTTGCTAGTTTTTCTTTATTTCGGTT
TTTACATGTAAAGAATGATATGATGGATTGAAGAATATTTGGCATTTGAT
ATTTGCTAGATAAATGTTTATTGTGGAGCTTATCTTGTTTCACTTTACC
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