DY257880

Overview
NameDY257880
Unique NameDY257880
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length649
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257880 vs. ExPASy Swiss-Prot
Match: H3L_BOVIN (Histone H3-like OS=Bos taurus PE=2 SV=3)

HSP 1 Score: 163.31 bits (412), Expect = 9.843e-40
Identity = 85/119 (71.43%), Postives = 97/119 (81.51%), Query Frame = 1
Query:   76 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFED---TNLCAIHAK 423
            MARTK+TA KSTGGK PRKQL  +AA KSAP+T G+ KPHRYRPGTVALREIR YQKST  LIRKLPFQRLVREIAQDFKTDL+FQS A+  LQEA+EAYLV   E    +NL  ++++
Sbjct:    1 MARTKRTAYKSTGGKVPRKQLVIEAAGKSAPSTSGMTKPHRYRPGTVALREIRPYQKSTHFLIRKLPFQRLVREIAQDFKTDLKFQSAAIRTLQEASEAYLVVFLESKQHSNLARMYSQ 119          
BLAST of DY257880 vs. ExPASy Swiss-Prot
Match: H3_ENTHI (Histone H3 OS=Entamoeba histolytica GN=H3 PE=3 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 4.136e-38
Identity = 91/136 (66.91%), Postives = 100/136 (73.53%), Query Frame = 1
Query:   76 MARTK-QTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 480
            MARTK    R S       K +A KAA+K        KK  R  PG VAL EI+  Q+STELL+RK PFQ LVREIAQ  K+DLRFQS A+ ALQEAAEAYLVGLFEDTNLCAIHAKR+TIMPKD+QLARRIRGER
Sbjct:    1 MARTKGHIERPSNKSAKAVKNVAFKAAKKMLSKDSTKKK--RAHPGAVALTEIKVLQRSTELLLRKAPFQALVREIAQVSKSDLRFQSAAISALQEAAEAYLVGLFEDTNLCAIHAKRITIMPKDMQLARRIRGER 134          
BLAST of DY257880 vs. ExPASy Swiss-Prot
Match: H33_HORVU (Histone H3.3 (Fragment) OS=Hordeum vulgare PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.203e-37
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 1
Query:  244 KSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 483
            KSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 KSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 80          
BLAST of DY257880 vs. ExPASy Swiss-Prot
Match: H3L3_LILLO (Histone H3-like 3 OS=Lilium longiflorum GN=leH3 PE=2 SV=3)

HSP 1 Score: 155.221 bits (391), Expect = 2.681e-37
Identity = 90/156 (57.69%), Postives = 102/156 (65.38%), Query Frame = 1
Query:   76 MARTKQTARKSTGGKAPRKQLATKAARKSAPTT-----------------------GGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 474
            MAR K  AR STGGKAPRKQLA KA RK+AP T                        GVK+PHRYRPG + LREIRKY+K+    I KLPF RLVR+I Q+ K  LRFQS A+ A +E +EAYLV LFED    AIHAKRVT++PKDIQLAR I G
Sbjct:    1 MARMKLNARMSTGGKAPRKQLAYKAVRKAAPPTIGVKLPNSYRPGDQTVCKPAPPTDGVKEPHRYRPGKMGLREIRKYKKNARFFISKLPFHRLVRKITQNLKAHLRFQSTAMPAPEEVSEAYLVKLFED----AIHAKRVTLVPKDIQLARCIGG 152          
BLAST of DY257880 vs. ExPASy Swiss-Prot
Match: CENPA_NEUCR (Histone H3-like centromeric protein cse-4 OS=Neurospora crassa GN=cse-4 PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.774e-34
Identity = 79/142 (55.63%), Postives = 102/142 (71.83%), Query Frame = 1
Query:   76 MARTKQTARKSTGGKAP------RKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKT---DLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 474
            + ++K  ++K+     P      R++    + +   P   G K+  RYRPGT+AL+EIR YQ++T+LL+ KLPF RLVREIA  F+    ++R+QS A+LALQEAAEA+LV LFEDTNLCAIHAKRVTIM KDIQLARRIRG
Sbjct:    8 VTKSKAVSKKAAAVPTPKATPPGRRKSRASSVQPGDPVPQGKKR--RYRPGTLALKEIRNYQRTTDLLVAKLPFARLVREIAMQFRPMDEEMRWQSQAILALQEAAEAFLVHLFEDTNLCAIHAKRVTIMQKDIQLARRIRG 147          
BLAST of DY257880 vs. ExPASy Swiss-Prot
Match: H3_LEIIN (Histone H3 OS=Leishmania infantum PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 4.732e-34
Identity = 79/136 (58.09%), Postives = 99/136 (72.79%), Query Frame = 1
Query:   76 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHR-YRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 480
            M+RTK+TAR        ++ + +K ++K+     GVK+ HR +RPGT A+REIRK+QKST LLI+  PFQRLVR + +  K  LRFQS A++ALQEA EAY+V L  DTNL  IHAKRVTI PKDIQLA R+RGER
Sbjct:    1 MSRTKETARA-------KRTITSKKSKKAPSGASGVKRSHRRWRPGTCAIREIRKFQKSTSLLIQCAPFQRLVRGVERQ-KEGLRFQSSAIMALQEATEAYIVSLMADTNLACIHAKRVTIQPKDIQLALRLRGER 128          
BLAST of DY257880 vs. ExPASy Swiss-Prot
Match: CENPA_CANAL (Histone H3-like centromeric protein CSE4 OS=Candida albicans GN=CSE4 PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.377e-33
Identity = 78/106 (73.58%), Postives = 89/106 (83.96%), Query Frame = 1
Query:  169 TTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDF---KTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 477
            T   VKK  RYRPGT ALREIR+YQKST+LLIRKLPF RLVREI+ DF      LR+QS+A+LALQEA+E++L+ L EDTNLCAIHAKRVTIM KDIQLARRIRG+
Sbjct:  104 TVPRVKK--RYRPGTKALREIRQYQKSTDLLIRKLPFARLVREISLDFVGPSYGLRWQSNAILALQEASESFLIHLLEDTNLCAIHAKRVTIMQKDIQLARRIRGQ 207          
BLAST of DY257880 vs. ExPASy Swiss-Prot
Match: CENPA_DANRE (Histone H3-like centromeric protein A OS=Danio rerio GN=cenpa PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.165e-32
Identity = 72/132 (54.55%), Postives = 93/132 (70.45%), Query Frame = 1
Query:   82 RTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTD-LRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 474
            R   T R+ +   +      ++  R S P+    +K H++RPGT AL EIRKYQKST LL+RK PF RLVRE+ Q F  + + +Q +A++ALQEAAEA++V LF D NLCAIHAKRVT+ P+DIQLARRIRG
Sbjct:   10 RKPSTPRRRSPPASLPPPAGSRTRRHSGPSGSSPRKKHKFRPGTRALMEIRKYQKSTGLLLRKAPFSRLVREVCQMFSREHMMWQGYALMALQEAAEAFMVRLFSDANLCAIHAKRVTLFPRDIQLARRIRG 141          
BLAST of DY257880 vs. ExPASy Swiss-Prot
Match: CENPA_PICFA (Histone H3-like centromeric protein CSE4 OS=Pichia farinosa GN=CSE4 PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.596e-32
Identity = 72/96 (75.00%), Postives = 84/96 (87.50%), Query Frame = 1
Query:  196 RYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDF---KTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 474
            RYRPGT ALREIR+YQ+S+ELLIRKLPF RLV+E+A+++      +R+QS+AVLALQEA EA+LV L EDTNLCAIHAKRVTIM KDIQLARRIRG
Sbjct:   61 RYRPGTKALREIRRYQRSSELLIRKLPFARLVKEVAENYIGADYGIRWQSNAVLALQEACEAFLVHLLEDTNLCAIHAKRVTIMQKDIQLARRIRG 156          
BLAST of DY257880 vs. ExPASy Swiss-Prot
Match: CENPA_ASHGO (Histone H3-like centromeric protein CSE4 OS=Ashbya gossypii GN=CSE4 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.429e-32
Identity = 73/139 (52.52%), Postives = 95/139 (68.35%), Query Frame = 1
Query:   70 RVMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKT---DLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 477
            RV+ R  + A   +     R++       +   T    KKP RYRP  VAL+EIR+YQ+STELLI ++PF RLV+E+   F T    +R+QS A+LALQEA+EAY+VGL E TNL A+HAKRVT+M KD+QLARRIRG+
Sbjct:   64 RVVERVAEPAAAESRADGAREEERPARPARPRETRRIAKKPQRYRPSDVALQEIRRYQRSTELLISRMPFARLVKEVTDQFTTVDQQMRWQSMAILALQEASEAYIVGLLEHTNLLALHAKRVTVMRKDMQLARRIRGQ 202          
The following BLAST results are available for this feature:
BLAST of DY257880 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 212
Match NameE-valueIdentityDescription
H3L_BOVIN9.843e-4071.43Histone H3-like OS=Bos taurus PE=2 SV=3[more]
H3_ENTHI4.136e-3866.91Histone H3 OS=Entamoeba histolytica GN=H3 PE=3 SV=... [more]
H33_HORVU1.203e-37100.00Histone H3.3 (Fragment) OS=Hordeum vulgare PE=3 SV... [more]
H3L3_LILLO2.681e-3757.69Histone H3-like 3 OS=Lilium longiflorum GN=leH3 PE... [more]
CENPA_NEUCR2.774e-3455.63Histone H3-like centromeric protein cse-4 OS=Neuro... [more]
H3_LEIIN4.732e-3458.09Histone H3 OS=Leishmania infantum PE=2 SV=1[more]
CENPA_CANAL1.377e-3373.58Histone H3-like centromeric protein CSE4 OS=Candid... [more]
CENPA_DANRE1.165e-3254.55Histone H3-like centromeric protein A OS=Danio rer... [more]
CENPA_PICFA2.596e-3275.00Histone H3-like centromeric protein CSE4 OS=Pichia... [more]
CENPA_ASHGO4.429e-3252.52Histone H3-like centromeric protein CSE4 OS=Ashbya... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1DH12ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257880 ID=DY257880; Name=DY257880; organism=Citrus clementina; type=EST; length=649bp
GGAATTTCTTTACGTTATTGAGGCGTTGCATTCAGATCTGTGCATTTTGC
AGTTTGTGTTGGTGATTAAAGAGTAATGGCCCGTACGAAGCAAACCGCGC
GCAAGTCAACTGGAGGAAAGGCTCCGAGGAAGCAGCTCGCCACAAAGGCT
GCAAGAAAATCTGCTCCAACAACTGGTGGAGTCAAGAAGCCCCATCGTTA
CCGTCCAGGAACTGTCGCCCTACGTGAAATCCGCAAATATCAAAAGAGCA
CTGAGCTTTTGATCCGCAAGCTGCCTTTCCAGCGGCTGGTTCGTGAAATT
GCTCAAGATTTCAAGACAGATTTGAGGTTCCAAAGCCACGCGGTTCTTGC
GCTGCAGGAAGCGGCAGAGGCTTATCTCGTGGGTCTGTTCGAGGACACCA
ACCTTTGTGCTATCCATGCCAAGCGAGTCACCATTATGCCCAAGGATATT
CAACTGGCAAGGCGAATCCGAGGCGAGCGTGCTTAATTTGTGATTCCTTA
GGTAGTCGTCAGTTTCCTATTTAGTTTGCTAGTTTTTCTTTATTTCGGTT
TTTACATGTAAAGAATGATATGATGGATTGAAGAATATTTGGCATTTGAT
ATTTGCTAGATAAATGTTTATTGTGGAGCTTATCTTGTTTCACTTTACC
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