DY257883

Overview
NameDY257883
Unique NameDY257883
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1290
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257883 vs. ExPASy Swiss-Prot
Match: DCAF6_HUMAN (DDB1- and CUL4-associated factor 6 OS=Homo sapiens GN=DCAF6 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.113e-18
Identity = 63/196 (32.14%), Postives = 96/196 (48.98%), Query Frame = 1
Query:    1 GHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTK-RLGKHQGRVYKLAVEPGSPYIIYSCGENGFVQHFDLR-SDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYD-----IRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYS-NTSELLISYNDELVYLFE 564
            GH  NIF  + +P T+D++I++ S DG +    + +D   + + +   H G  Y++   P  PY   SCGE+G V+ FD R   S T+         N ++   S     + I P  P Y AVG SD   R+YD      R    Y+   +   V  F P HL  K +  +T L YS +  E+L+SY+ + +YLF+
Sbjct:   92 GHRANIFSAKFLPCTNDKQIVSCSGDGVIFYTNVEQDAETNRQCQFTCHYGTTYEIMTVPNDPYTFLSCGEDGTVRWFDTRIKTSCTKEDCKDDILINCRRAATS-----VAICPPIPYYLAVGCSDSSVRIYDRRMLGTRATGNYAGRGTTGMVARFIPSHLNNK-SCRVTSLCYSEDGQEILVSYSSDYIYLFD 281          

HSP 2 Score: 91.2781 bits (225), Expect = 1.370e-17
Identity = 41/82 (50.00%), Postives = 58/82 (70.73%), Query Frame = 1
Query:  637 VYSGHRNSQT-VKGVNFFGPNDEYVMRGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM 879
            VY GHRNS+T +K  NF+G N  +VM GSDCGH+FIW +   + + L+  D HVVN L+PHP  P+ A+ GI+  +K+W+P+
Sbjct:  712 VYKGHRNSRTMIKEANFWGAN--FVMSGSDCGHIFIWDRHTAEHLMLLEADNHVVNCLQPHPFDPILASSGIDYDIKIWSPL 791          
BLAST of DY257883 vs. ExPASy Swiss-Prot
Match: YBU3_SCHPO (Uncharacterized WD repeat-containing protein C609.03 OS=Schizosaccharomyces pombe GN=SPBC609.03 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 6.148e-18
Identity = 61/176 (34.66%), Postives = 90/176 (51.14%), Query Frame = 1
Query:  535 YNDELVYLF--------EKNMGLGPSPLSLSPEDLQKREEPQV--------YSGHRNSQTVKGVNFFGPNDEYVMRGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPL------PDNAEKIMKANKQGKEDHSRIT-LTPDVIMHV 993
            Y DE  Y +        +++   GP+ LSL  +  +K  EP V        Y GH N +++K VNF+G NDEYVM GSD G  FIW K    ++ ++ GD   VN +E HP  P  A  GI+ TVK++    T  PP         N+ KI+  N+  ++  SR + +T  ++ H+
Sbjct:  614 YQDEESYSYASDDDDESDEDSDEGPTLLSLRMKK-RKAVEPNVPVNTHVKSYYGHCNVESIKNVNFYGQNDEYVMSGSDDGRFFIWDKLNASILAIIHGDSEAVNVIEGHPRCPTLAVSGIDSTVKIFNTENT--PPSGCSRNHTSNSYKIIATNEMNRQQGSRDSYITSRMLSHL 786          

HSP 2 Score: 74.7146 bits (182), Expect = 1.327e-12
Identity = 67/236 (28.39%), Postives = 109/236 (46.19%), Query Frame = 1
Query:    1 GHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQI--FEDGRMDTKRLGKHQGRVYKLAVEP---------GSPYIIYSCGENGFVQHFDLRSDSATRL-FYCSSFSENSKQPMNSIRLN--AIVIDPRNPNYFAVGGSDEYARVYDIR------KCHW---YSPISSDTPVDTFCPRHLIGKNNI---HITGLAYS--NTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKR 624
            GH+ NIF  + +P++++R+I+++S D  ++L  +   ++G MD     + Q R +  A++          G  +++  C E+G  + +D+R          C S   N     N  R+N   I + P NP YFA+GG+  YA +YD R      +  W    SP      V  F P        I   +IT   +S  N +ELL+S+N + VYLF  +     +P     ED  K+
Sbjct:   87 GHVQNIFSAKFVPYSNNRQILSASGDKLIKLFDLDSSKEGGMDHGM--ETQTRCWSCALDSVKNIVPCDNGHTFLV--CSEDGTARQYDIREPHVCNQDLDCPSILVN----YNPYRINLYTITMSPSNPYYFAIGGTHPYAFLYDRRMVKKSFRDDWTMNTSPEKDCRCVRKFSPDGSCNSQGILDRYITCCQFSAANPNELLVSWNSDYVYLFHVHEDKSYTPTFNKIEDSNKK 314          
BLAST of DY257883 vs. ExPASy Swiss-Prot
Match: WDTC1_MOUSE (WD and tetratricopeptide repeats protein 1 OS=Mus musculus GN=Wdtc1 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 2.583e-16
Identity = 44/101 (43.56%), Postives = 61/101 (60.40%), Query Frame = 1
Query:  595 SLSPEDLQKREEPQVYS----GHRNSQT-VKGVNFFGPNDEYVMRGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP 882
            S+S +++  RE    Y     GH N+ T +K  NFFG N +Y++ GSD G  FIW+K+   LVR++ GD  +VN L+PHP     AT GI+  V+LW P P
Sbjct:  511 SISEDEMVLRERSYDYQFRYCGHCNTTTDIKEANFFGSNAQYIVSGSDDGSFFIWEKETTNLVRVLQGDESIVNCLQPHPSYCFLATSGIDPVVRLWNPRP 611          

HSP 2 Score: 78.1814 bits (191), Expect = 1.200e-13
Identity = 58/215 (26.98%), Postives = 95/215 (44.19%), Query Frame = 1
Query:    1 GHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGENGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTP---VDTFCPR---------------HLIGK-----NNIHITGLAY----SNTSELLISYNDELVYLFE 564
            GH  NIF  + +P   DR +IT +AD +V +  +    +      G H  RV ++A  P  P   +S  E+G ++ +DLR +S     +     + ++     +    + ++P++ N  AVG S  + R+YDIR  H +      +P   V TFC R               HL  K     + + +    Y     N +ELL++   E VYLF+
Sbjct:   88 GHTANIFSVKFLPHAGDRILITGAADSKVHVHDLTV--KETIHMFGDHTNRVKRIATAPMWPNTFWSAAEDGLIRQYDLRENSK----HSEVLIDLTEYCGPMVEAKCLTVNPQDNNCLAVGASGPFVRLYDIRMIHNHRKSMRQSPSAGVHTFCDRQKPLPDGAAQYYVAGHLPVKLPDYNSRLRVLVATYVTFSPNGTELLVNMGGEQVYLFD 296          
BLAST of DY257883 vs. ExPASy Swiss-Prot
Match: WDTC1_HUMAN (WD and tetratricopeptide repeats protein 1 OS=Homo sapiens GN=WDTC1 PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 2.583e-16
Identity = 44/101 (43.56%), Postives = 61/101 (60.40%), Query Frame = 1
Query:  595 SLSPEDLQKREEPQVYS----GHRNSQT-VKGVNFFGPNDEYVMRGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP 882
            S+S +++  RE    Y     GH N+ T +K  NFFG N +Y++ GSD G  FIW+K+   LVR++ GD  +VN L+PHP     AT GI+  V+LW P P
Sbjct:  511 SISEDEMVLRERSYDYQFRYCGHCNTTTDIKEANFFGSNAQYIVSGSDDGSFFIWEKETTNLVRVLQGDESIVNCLQPHPSYCFLATSGIDPVVRLWNPRP 611          

HSP 2 Score: 80.8777 bits (198), Expect = 1.851e-14
Identity = 59/215 (27.44%), Postives = 95/215 (44.19%), Query Frame = 1
Query:    1 GHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGENGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTP---VDTFCPR---------------HLIGK-----NNIHITGLAY----SNTSELLISYNDELVYLFE 564
            GH  NIF  + +P   DR +IT +AD +V +  +    +      G H  RV ++A  P  P   +S  E+G ++ +DLR +S     +     + ++     +    + ++P++ N  AVG S  + R+YDIR  H +      +P   V TFC R               HL  K     N + +    Y     N +ELL++   E VYLF+
Sbjct:   88 GHTANIFSVKFLPHAGDRILITGAADSKVHVHDLTV--KETIHMFGDHTNRVKRIATAPMWPNTFWSAAEDGLIRQYDLRENSK----HSEVLIDLTEYCGQLVEAKCLTVNPQDNNCLAVGASGPFVRLYDIRMIHNHRKSMKQSPSAGVHTFCDRQKPLPDGAAQYYVAGHLPVKLPDYNNRLRVLVATYVTFSPNGTELLVNMGGEQVYLFD 296          
BLAST of DY257883 vs. ExPASy Swiss-Prot
Match: DCAF5_MOUSE (DDB1- and CUL4-associated factor 5 OS=Mus musculus GN=Dcaf5 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 2.263e-12
Identity = 71/302 (23.51%), Postives = 125/302 (41.39%), Query Frame = 1
Query:    4 HLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGENGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMRGSDCGHLFIWKKKG-------GKLVR----LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAP 876
            H  NIF       + + K+ +   D QV L  +     +D   +  H+  VY L+V P +  I  S  ++G V  +D+R       F  +++             ++++ +P  P   A   S E   ++DIRK                       ++++   G   S  S + + +N     L      L P    +       + + Q   G+ NS T+K   F G  D+Y++ GSD  +L++WK          G++V     ++ G R +VNQ+  +PH  M  + G+EK +K+W+P
Sbjct:  100 HHSNIFCLAFN--SGNTKVFSGGNDEQVILHDVESSETLD---VFAHEDAVYGLSVSPVNDNIFASSSDDGRVLIWDIRESPHGEPFCLANYPS---------AFHSVMFNPVEPRLLATANSKEGVGLWDIRK----------------------PQSSLLRYGGNLSLQSAMSVRFNSNGTQLLALRRRLPPVLYDIHSRLPVFQFDNQ---GYFNSCTMKSCCFAGDRDQYILSGSDDFNLYMWKIPADPEAGGIGRVVNGAFMVLKGHRSIVNQVRFNPHTYMICSSGVEKIIKIWSP 362          
The following BLAST results are available for this feature:
BLAST of DY257883 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
DCAF6_HUMAN2.113e-1832.14DDB1- and CUL4-associated factor 6 OS=Homo sapiens... [more]
YBU3_SCHPO6.148e-1834.66Uncharacterized WD repeat-containing protein C609.... [more]
WDTC1_MOUSE2.583e-1643.56WD and tetratricopeptide repeats protein 1 OS=Mus ... [more]
WDTC1_HUMAN2.583e-1643.56WD and tetratricopeptide repeats protein 1 OS=Homo... [more]
DCAF5_MOUSE2.263e-1223.51DDB1- and CUL4-associated factor 5 OS=Mus musculus... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2AA06ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257883 ID=DY257883; Name=DY257883; organism=Citrus clementina; type=EST; length=1290bp
GGCCATCTTGATAACATATTCCAAACACGAATTATGCCATTTACTGATGA
TCGGAAAATAATAACATCGTCCGCCGACGGCCAGGTGAGGCTTGGCCAAA
TCTTTGAGGATGGACGGATGGATACAAAAAGATTGGGAAAGCACCAAGGC
CGTGTGTACAAGCTAGCTGTAGAGCCAGGAAGTCCCTACATTATCTATAG
CTGTGGCGAAAATGGTTTTGTTCAACATTTTGATCTGCGAAGTGACAGTG
CAACACGGCTTTTCTACTGCTCCTCATTTTCAGAAAACAGCAAGCAGCCT
ATGAACAGCATAAGGTTGAATGCCATTGTAATTGACCCGAGAAATCCCAA
TTACTTTGCCGTGGGAGGTTCCGATGAATATGCACGTGTCTATGACATAA
GAAAATGCCATTGGTATTCACCAATTAGTTCAGATACGCCTGTGGACACG
TTTTGCCCCCGTCATCTGATTGGGAAAAACAATATTCATATCACTGGATT
GGCCTATTCTAACACAAGTGAACTGCTTATCTCTTACAACGATGAGCTCG
TATATCTGTTTGAGAAGAATATGGGATTGGGGCCTTCACCCTTGTCTCTC
TCTCCTGAGGATTTGCAGAAACGTGAGGAGCCACAGGTTTATTCTGGTCA
TAGGAATTCACAAACAGTTAAAGGAGTGAACTTCTTTGGCCCCAATGATG
AATATGTTATGAGAGGCTCTGACTGTGGTCACCTATTCATTTGGAAAAAG
AAGGGAGGTAAGCTTGTGCGTTTAATGGTTGGTGATCGACATGTAGTAAA
TCAGCTAGAGCCCCATCCACACATTCCGATGTTTGCTACATGTGGAATCG
AGAAGACTGTAAAGCTCTGGGCTCCTATGCCTACTGATTTTCCTCCATTG
CCCGACAATGCAGAAAAGATTATGAAAGCTAATAAACAGGGTAAAGAAGA
TCATTCGCGGATCACACTTACTCCTGACGTAATCATGCATGTTCTACGGC
TGGCAAAGGCGGCAAAAATTGGCATACAGGGAAAGGAAATCCATTGCCAC
TTAATTTTGAAAAGGGATGAAAAAGAAAGAAAAAACTTTTCCTTTTAAGA
ATTTTCAAAAAGTTGATCCCCCTTTCCGAAAGGGAGGGGGAAAAACCCAA
AAAAAAAGGGCAAAAATTTTCCCTAAAAAACCTTAAAACCCCCAAAAACC
CTTTGTATAATTTTTTTTTAAAAAAAAAAAAAACCCCAAAAAATTTTTTT
TGGGGTTTTTTTTAAAAATTTTTTCCCTCCTTTTTTTTTC
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