DY257887

Overview
NameDY257887
Unique NameDY257887
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length591
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10079 contig Ccv1_Contig10079:4..594. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257887 vs. ExPASy Swiss-Prot
Match: GLRX2_HUMAN (Glutaredoxin-2, mitochondrial OS=Homo sapiens GN=GLRX2 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 9.286e-20
Identity = 43/90 (47.78%), Postives = 60/90 (66.67%), Query Frame = 3
Query:  111 QETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLL 380
            QET+S N VV+FSKT C +C   K+LF  + V +K +EL+    G+  Q AL + TG++TVP +F+ G  IGG   T  LH+EGKL+PL+
Sbjct:   61 QETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMTGERTVPRIFVNGTFIGGATDTHRLHKEGKLLPLV 150          
BLAST of DY257887 vs. ExPASy Swiss-Prot
Match: GRS12_ARATH (Monothiol glutaredoxin-S12, chloroplastic OS=Arabidopsis thaliana GN=GRXS12 PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.069e-19
Identity = 49/92 (53.26%), Postives = 64/92 (69.57%), Query Frame = 3
Query:  117 TVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELNK-ESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEA 389
            TV+ N VVV+SKT+C +   VK LF+ L V    +EL++  S+GS +Q+ L + TGQ TVPNVFIGGKHIGGC  T  LH +G+L  +L EA
Sbjct:   81 TVAENPVVVYSKTWCSYSSQVKSLFKSLQVEPLVVELDQLGSEGSQLQNVLEKITGQYTVPNVFIGGKHIGGCSDTLQLHNKGELEAILAEA 172          
BLAST of DY257887 vs. ExPASy Swiss-Prot
Match: GLRX2_PONAB (Glutaredoxin-2, mitochondrial OS=Pongo abelii GN=GLRX2 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.069e-19
Identity = 43/90 (47.78%), Postives = 60/90 (66.67%), Query Frame = 3
Query:  111 QETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLL 380
            QET+S N VV+FSKT C +C   K+LF+ + V +K +EL+    G+  Q AL + TG +TVP +F+ G  IGG   T  LH+EGKL+PL+
Sbjct:   58 QETISDNCVVIFSKTSCSYCTMAKKLFRDMNVNYKVVELDLLEYGNQFQDALYKMTGGRTVPRIFVNGTFIGGATDTHRLHKEGKLLPLV 147          
BLAST of DY257887 vs. ExPASy Swiss-Prot
Match: GRS10_ORYSJ (Monothiol glutaredoxin-S10 OS=Oryza sativa subsp. japonica GN=GRXS10 PE=2 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 2.702e-19
Identity = 45/93 (48.39%), Postives = 65/93 (69.89%), Query Frame = 3
Query:  111 QETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELNK-ESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTE 386
            + T++ N VV++SK++C + + VK LF+++GV    IEL++  + G  +Q  L   TGQ TVPNVFIGGKHIGGC  T  LHR+G+L  +L+E
Sbjct:   64 KRTLADNPVVIYSKSWCSYSMEVKALFKRIGVQPHVIELDQLGAQGPQLQKVLERLTGQSTVPNVFIGGKHIGGCTDTVKLHRKGELATMLSE 156          
BLAST of DY257887 vs. ExPASy Swiss-Prot
Match: GLRX2_RAT (Glutaredoxin-2, mitochondrial OS=Rattus norvegicus GN=Glrx2 PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 3.529e-19
Identity = 42/90 (46.67%), Postives = 61/90 (67.78%), Query Frame = 3
Query:  111 QETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLL 380
            QET+S+N VV+FSK+ C +C   K++F  + V +K +EL+    GS  Q AL + TG++TVP +F+ G  IGG   T  LH+EGKL+PL+
Sbjct:   54 QETISNNCVVIFSKSSCSYCSMAKKIFHDMNVNYKVVELDMVEYGSQFQEALYKMTGERTVPRIFVNGIFIGGAADTHRLHKEGKLLPLV 143          
BLAST of DY257887 vs. ExPASy Swiss-Prot
Match: TRXR3_MOUSE (Thioredoxin reductase 3 (Fragment) OS=Mus musculus GN=Txnrd3 PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 4.609e-19
Identity = 41/97 (42.27%), Postives = 61/97 (62.89%), Query Frame = 3
Query:  105 KAQETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGA 395
            + ++ +  N V++FSK++CP    VKELF  LGV +  +EL++  DG+ +Q  L E + QKTVPN+F+   H+GGCD T   H+ G L  LL +  A
Sbjct:  112 RLRDLIEGNRVMIFSKSYCPHSTRVKELFSSLGVVYNILELDQVDDGASVQEVLTEISNQKTVPNIFVNKVHVGGCDRTFQAHQNGLLQKLLQDDSA 208          
BLAST of DY257887 vs. ExPASy Swiss-Prot
Match: GRXC5_ARATH (Glutaredoxin-C5, chloroplastic OS=Arabidopsis thaliana GN=GRXC5 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 7.861e-19
Identity = 46/94 (48.94%), Postives = 64/94 (68.09%), Query Frame = 3
Query:  111 QETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELNKES-DGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEA 389
            ++TV+ N+VV++SKT+C +C  VK LF++LGV    +EL++    G  +Q  L   TGQ TVPNVF+ GKHIGGC  T  L+R+G L  +L EA
Sbjct:   74 RKTVTENTVVIYSKTWCSYCTEVKTLFKRLGVQPLVVELDQLGPQGPQLQKVLERLTGQHTVPNVFVCGKHIGGCTDTVKLNRKGDLELMLAEA 167          
BLAST of DY257887 vs. ExPASy Swiss-Prot
Match: GRXC4_ARATH (Glutaredoxin-C4 OS=Arabidopsis thaliana GN=GRXC4 PE=2 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.341e-18
Identity = 41/94 (43.62%), Postives = 63/94 (67.02%), Query Frame = 3
Query:  111 QETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAG 392
            ++T+SS+ +V+FSK++CP+C   K +F++L      +EL++  DG  IQ+AL E  G++TVP VFI GKH+GG D T   +  G+L  LL  +G
Sbjct:   36 KKTISSHKIVIFSKSYCPYCKKAKSVFRELDQVPYVVELDEREDGWSIQTALGEIVGRRTVPQVFINGKHLGGSDDTVDAYESGELAKLLGVSG 129          
BLAST of DY257887 vs. ExPASy Swiss-Prot
Match: TRXR3_HUMAN (Thioredoxin reductase 3 OS=Homo sapiens GN=TXNRD3 PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.135e-17
Identity = 41/89 (46.07%), Postives = 57/89 (64.04%), Query Frame = 3
Query:  120 VSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTE 386
            +  + VV+FSK++CP    VKELF  LGV    +EL++  DG+ +Q  L+E T QKTVPN+F+   H+GGCD T   ++ G L  LL E
Sbjct:  174 IERSRVVIFSKSYCPHSTRVKELFSSLGVECNVLELDQVDDGARVQEVLSEITNQKTVPNIFVNKVHVGGCDQTFQAYQSGLLQKLLQE 262          
BLAST of DY257887 vs. ExPASy Swiss-Prot
Match: GRXC3_ARATH (Glutaredoxin-C3 OS=Arabidopsis thaliana GN=GRXC3 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 9.609e-17
Identity = 40/90 (44.44%), Postives = 56/90 (62.22%), Query Frame = 3
Query:  111 QETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLL 380
            Q  + SN +V+FSK++CP+C+  K +F QL      +EL++  DG  IQ  L E+ G++TVP VF+ GKHIGG D   A    G+L  LL
Sbjct:   38 QNAILSNKIVIFSKSYCPYCLRSKRIFSQLKEEPFVVELDQREDGDQIQYELLEFVGRRTVPQVFVNGKHIGGSDDLGAALESGQLQKLL 127          
The following BLAST results are available for this feature:
BLAST of DY257887 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
GLRX2_HUMAN9.286e-2047.78Glutaredoxin-2, mitochondrial OS=Homo sapiens GN=G... [more]
GRS12_ARATH2.069e-1953.26Monothiol glutaredoxin-S12, chloroplastic OS=Arabi... [more]
GLRX2_PONAB2.069e-1947.78Glutaredoxin-2, mitochondrial OS=Pongo abelii GN=G... [more]
GRS10_ORYSJ2.702e-1948.39Monothiol glutaredoxin-S10 OS=Oryza sativa subsp. ... [more]
GLRX2_RAT3.529e-1946.67Glutaredoxin-2, mitochondrial OS=Rattus norvegicus... [more]
TRXR3_MOUSE4.609e-1942.27Thioredoxin reductase 3 (Fragment) OS=Mus musculus... [more]
GRXC5_ARATH7.861e-1948.94Glutaredoxin-C5, chloroplastic OS=Arabidopsis thal... [more]
GRXC4_ARATH1.341e-1843.62Glutaredoxin-C4 OS=Arabidopsis thaliana GN=GRXC4 P... [more]
TRXR3_HUMAN1.135e-1746.07Thioredoxin reductase 3 OS=Homo sapiens GN=TXNRD3 ... [more]
GRXC3_ARATH9.609e-1744.44Glutaredoxin-C3 OS=Arabidopsis thaliana GN=GRXC3 P... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2AB01ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257887 ID=DY257887; Name=DY257887; organism=Citrus clementina; type=EST; length=591bp
GAAACAAGTTCTCTCGTTTGTAAAGCCAAAGAGGATTTGAAGCTTATTTA
GGGTTTGTGAGATTTCGAATCAAAGACAAAGAAGACACAGAAATGGCTTT
GCCCAAGGCCCAGGAAACCGTTTCCTCCAATTCCGTCGTCGTTTTCAGCA
AAACGTTTTGTCCGTTCTGCGTGAGTGTCAAAGAGCTGTTTCAGCAACTC
GGAGTCACTTTCAAGGCCATTGAACTGAACAAAGAAAGTGATGGAAGTGA
CATTCAATCAGCTCTAGCTGAGTGGACTGGACAGAAAACTGTTCCAAATG
TCTTCATCGGAGGGAAACACATTGGTGGCTGCGATTCAACTACTGCACTG
CACAGGGAAGGGAAGCTGGTTCCTCTGCTCACTGAAGCTGGAGCTGTTGC
CAAGACAGCTGCCTGATGGATGGCTATTGTCTGCCTGTTAATTCTAGTAA
TAAATAAAGAATGTGTTGGTAGTGCTTAATCTGTCTGAATTAAACATGAA
ATTATGCTTATTTGAGTAATTTCCAATGCACTTTTTTGTTCAGTTTCTGT
TTTATGTTGAAATCTGTATGAATTTTATCAGATTTTTCATC
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