DY257887

Overview
NameDY257887
Unique NameDY257887
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length591
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10079 contig Ccv1_Contig10079:4..594. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257887 vs. ExPASy Swiss-Prot
Match: GLRX1_RABIT (Glutaredoxin-1 OS=Oryctolagus cuniculus GN=GLRX PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.457e-12
Identity = 41/104 (39.42%), Postives = 58/104 (55.77%), Query Frame = 3
Query:  108 AQETVSSN----SVVVFSKTFCPFCVSVKELFQQLGVT---FKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAV 398
            AQE V+S      VVVF K  CP+C   +E+  QL       + +++   SD S+IQ  L + TG +TVP VF+G   IGGC    A+  +G+L+  L E GA+
Sbjct:    1 AQEFVNSKIQPGKVVVFIKPTCPYCRKTQEILSQLPFKQGLLEFVDITATSDMSEIQDYLQQLTGARTVPRVFLGKDCIGGCSDLIAMQEKGELLARLKEMGAL 104          
BLAST of DY257887 vs. ExPASy Swiss-Prot
Match: GLRX_PSEAE (Glutaredoxin OS=Pseudomonas aeruginosa GN=grx PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.127e-12
Identity = 33/83 (39.76%), Postives = 52/83 (62.65%), Query Frame = 3
Query:  135 VVVFSKTFCPFCVSVKELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLT 383
            VV+++  +CP+C+  K+L Q+ GV F+ I  + + +   +++ LA   G  TVP ++IG  H+GGCD   AL R GKL  LL+
Sbjct:    4 VVIYTTAWCPYCIRAKQLLQRKGVDFQEIACDGKPE---LRAELARKAGSTTVPQIWIGETHVGGCDDLHALERAGKLDALLS 83          
BLAST of DY257887 vs. ExPASy Swiss-Prot
Match: GRC14_ORYSJ (Putative glutaredoxin-C14 OS=Oryza sativa subsp. japonica GN=GRXC14 PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 9.307e-12
Identity = 37/101 (36.63%), Postives = 60/101 (59.41%), Query Frame = 3
Query:   99 LPKAQETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQ-KTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAV 398
            + +  +  S  +VV+F+ + C  C +V  LF  LGV     EL+++  G +++ AL +  G+   VP VFIGGK +GG +   +LH  G+L+P+L  AGA+
Sbjct:    1 MDRVMKLASERAVVIFTLSSCCMCHTVTRLFCDLGVNALVHELDQDPRGKEMERALLKLLGRGPPVPVVFIGGKLVGGTNKIMSLHLGGELIPMLKNAGAL 101          
BLAST of DY257887 vs. ExPASy Swiss-Prot
Match: GRC15_ORYSJ (Glutaredoxin-C15 OS=Oryza sativa subsp. japonica GN=GRXC15 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.073e-11
Identity = 39/94 (41.49%), Postives = 55/94 (58.51%), Query Frame = 3
Query:  123 SSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELNKES-DGSDIQSALAEWTGQKT-VPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAV 398
            +  +VV+F+ + CP C +V  LF  LGV     EL+++   G D++  LA   G+   VP VFI GK +G  D   +LH  GKLVP+L  AGA+
Sbjct:    9 TEKAVVIFTASNCPMCHTVVSLFSDLGVGAAVHELDRDPLHGRDMERDLARRLGRSPPVPAVFIAGKLVGSTDRVMSLHLAGKLVPMLKAAGAI 102          
BLAST of DY257887 vs. ExPASy Swiss-Prot
Match: GRC11_ORYSJ (Putative glutaredoxin-C11 OS=Oryza sativa subsp. japonica GN=GRXC11 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.619e-11
Identity = 38/98 (38.78%), Postives = 55/98 (56.12%), Query Frame = 3
Query:  123 SSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELNKESDGSDIQSALAE------WTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAV 398
            S  +VVVF+K+ C  C +V  L  +L V+    EL+++  G +++  LA         G   VP VFIGG  +GG     A+H +G+LVPLL  AGA+
Sbjct:   10 SERAVVVFTKSGCCMCTAVTTLLGELAVSAAVHELDRDPLGKEMEKELARRLYGSSGRGGPAVPAVFIGGSLVGGTSKVMAMHLKGELVPLLKSAGAL 107          
BLAST of DY257887 vs. ExPASy Swiss-Prot
Match: GLRX1_BOVIN (Glutaredoxin-1 OS=Bos taurus GN=GLRX PE=1 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 4.619e-11
Identity = 37/105 (35.24%), Postives = 54/105 (51.43%), Query Frame = 3
Query:   93 MALPKAQETVSSNSVVVFSKTFCPFCVSVKELFQQLGVT---FKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAV 398
            MA       +    VVVF K  CP+C   +EL  QL       + +++    + S+IQ  L + TG +TVP VFIG + IGGC     +H  G+L+  L + GA+
Sbjct:    1 MAQAFVNSKIQPGKVVVFIKPTCPYCRKTQELLSQLPFKQGLLEFVDITAAGNISEIQDYLQQLTGARTVPRVFIGQECIGGCTDLVNMHERGELLTRLKQMGAL 105          
BLAST of DY257887 vs. ExPASy Swiss-Prot
Match: GRXC8_ARATH (Glutaredoxin-C8 OS=Arabidopsis thaliana GN=GRXC8 PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 7.879e-11
Identity = 40/108 (37.04%), Postives = 58/108 (53.70%), Query Frame = 3
Query:   99 LPKAQETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQKT--------VPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAV 398
            L K +   + N+VV+FS + C  C ++K LF+ +GV+    EL+    G +I  AL    G  +        +P VFIGGK +G  +   A H  G LVPLL +AGA+
Sbjct:   31 LAKIESMAAENAVVIFSVSTCCMCHAIKRLFRGMGVSPAVHELDLLPYGVEIHRALLRLLGCSSGGATSPGALPVVFIGGKMVGAMERVMASHINGSLVPLLKDAGAL 138          
The following BLAST results are available for this feature:
BLAST of DY257887 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
GLRX1_RABIT5.457e-1239.42Glutaredoxin-1 OS=Oryctolagus cuniculus GN=GLRX PE... [more]
GLRX_PSEAE7.127e-1239.76Glutaredoxin OS=Pseudomonas aeruginosa GN=grx PE=3... [more]
GRC14_ORYSJ9.307e-1236.63Putative glutaredoxin-C14 OS=Oryza sativa subsp. j... [more]
GRC15_ORYSJ2.073e-1141.49Glutaredoxin-C15 OS=Oryza sativa subsp. japonica G... [more]
GRC11_ORYSJ4.619e-1138.78Putative glutaredoxin-C11 OS=Oryza sativa subsp. j... [more]
GLRX1_BOVIN4.619e-1135.24Glutaredoxin-1 OS=Bos taurus GN=GLRX PE=1 SV=3[more]
GRXC8_ARATH7.879e-1137.04Glutaredoxin-C8 OS=Arabidopsis thaliana GN=GRXC8 P... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2AB01ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257887 ID=DY257887; Name=DY257887; organism=Citrus clementina; type=EST; length=591bp
GAAACAAGTTCTCTCGTTTGTAAAGCCAAAGAGGATTTGAAGCTTATTTA
GGGTTTGTGAGATTTCGAATCAAAGACAAAGAAGACACAGAAATGGCTTT
GCCCAAGGCCCAGGAAACCGTTTCCTCCAATTCCGTCGTCGTTTTCAGCA
AAACGTTTTGTCCGTTCTGCGTGAGTGTCAAAGAGCTGTTTCAGCAACTC
GGAGTCACTTTCAAGGCCATTGAACTGAACAAAGAAAGTGATGGAAGTGA
CATTCAATCAGCTCTAGCTGAGTGGACTGGACAGAAAACTGTTCCAAATG
TCTTCATCGGAGGGAAACACATTGGTGGCTGCGATTCAACTACTGCACTG
CACAGGGAAGGGAAGCTGGTTCCTCTGCTCACTGAAGCTGGAGCTGTTGC
CAAGACAGCTGCCTGATGGATGGCTATTGTCTGCCTGTTAATTCTAGTAA
TAAATAAAGAATGTGTTGGTAGTGCTTAATCTGTCTGAATTAAACATGAA
ATTATGCTTATTTGAGTAATTTCCAATGCACTTTTTTGTTCAGTTTCTGT
TTTATGTTGAAATCTGTATGAATTTTATCAGATTTTTCATC
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