DY257890

Overview
NameDY257890
Unique NameDY257890
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length438
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12665 contig Ccv1_Contig12665:656..1093. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257890 vs. ExPASy Swiss-Prot
Match: RL2_KORCO (50S ribosomal protein L2P OS=Korarchaeum cryptofilum (strain OPF8) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.423e-12
Identity = 31/43 (72.09%), Postives = 34/43 (79.07%), Query Frame = 1
Query:   25 WPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 153
            WP VRGVAMNPV HPHGGG+H+  G  +TV R APPGQKVG I
Sbjct:  187 WPVVRGVAMNPVSHPHGGGSHKRPGKPTTVARTAPPGQKVGHI 229          
BLAST of DY257890 vs. ExPASy Swiss-Prot
Match: RL2_THEVO (50S ribosomal protein L2P OS=Thermoplasma volcanium GN=rpl2p PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.471e-12
Identity = 30/38 (78.95%), Postives = 33/38 (86.84%), Query Frame = 1
Query:   34 VRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVG 147
            VRGVAMN V HPHGGGNHQH+G  STV R+APPG+KVG
Sbjct:  184 VRGVAMNAVNHPHGGGNHQHVGRPSTVGRNAPPGRKVG 221          
BLAST of DY257890 vs. ExPASy Swiss-Prot
Match: RL2_THEAC (50S ribosomal protein L2P OS=Thermoplasma acidophilum GN=rpl2p PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.471e-12
Identity = 30/38 (78.95%), Postives = 33/38 (86.84%), Query Frame = 1
Query:   34 VRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVG 147
            VRGVAMN V HPHGGGNHQH+G  STV R+APPG+KVG
Sbjct:  184 VRGVAMNAVNHPHGGGNHQHVGRPSTVGRNAPPGRKVG 221          
BLAST of DY257890 vs. ExPASy Swiss-Prot
Match: RL2_HYPBU (50S ribosomal protein L2P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.471e-12
Identity = 31/51 (60.78%), Postives = 38/51 (74.51%), Query Frame = 1
Query:    1 KFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 153
            K+  K + WP+VRGVAMN V HPHGGG+HQ     +TV R+APPG+KVG I
Sbjct:  178 KWSAKPHVWPRVRGVAMNAVNHPHGGGSHQSPSFPTTVSRNAPPGRKVGHI 228          
BLAST of DY257890 vs. ExPASy Swiss-Prot
Match: RL2_METVS (50S ribosomal protein L2P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 7.626e-12
Identity = 30/47 (63.83%), Postives = 36/47 (76.60%), Query Frame = 1
Query:   13 KRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 153
            K   WPKVRGVAMN V+HP+GGG HQH+G  S+V R+  PG+KVG I
Sbjct:  186 KAVAWPKVRGVAMNAVDHPYGGGRHQHLGKPSSVSRNTSPGRKVGHI 232          
BLAST of DY257890 vs. ExPASy Swiss-Prot
Match: RL2_METVA (50S ribosomal protein L2P OS=Methanococcus vannielii GN=rpl2p PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 7.626e-12
Identity = 30/47 (63.83%), Postives = 36/47 (76.60%), Query Frame = 1
Query:   13 KRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 153
            K   WPKVRGVAMN V+HP+GGG HQH+G  S+V R+  PG+KVG I
Sbjct:  186 KAVAWPKVRGVAMNAVDHPYGGGRHQHLGKPSSVSRNTSPGRKVGHI 232          
BLAST of DY257890 vs. ExPASy Swiss-Prot
Match: RL2_METMP (50S ribosomal protein L2P OS=Methanococcus maripaludis GN=rpl2p PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 7.626e-12
Identity = 31/47 (65.96%), Postives = 35/47 (74.47%), Query Frame = 1
Query:   13 KRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 153
            K   WPKVRGVAMN V+HP+GGG HQHIG  S+V R   PG+KVG I
Sbjct:  186 KAVAWPKVRGVAMNAVDHPYGGGRHQHIGKPSSVSRHTSPGRKVGHI 232          
BLAST of DY257890 vs. ExPASy Swiss-Prot
Match: RL2_METM7 (50S ribosomal protein L2P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.301e-11
Identity = 30/47 (63.83%), Postives = 35/47 (74.47%), Query Frame = 1
Query:   13 KRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 153
            K   WPKVRGVAMN V+HP+GGG HQH+G  S+V R   PG+KVG I
Sbjct:  186 KAIAWPKVRGVAMNAVDHPYGGGRHQHLGKPSSVSRHTSPGRKVGHI 232          
BLAST of DY257890 vs. ExPASy Swiss-Prot
Match: RL2_METM6 (50S ribosomal protein L2P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.301e-11
Identity = 30/47 (63.83%), Postives = 35/47 (74.47%), Query Frame = 1
Query:   13 KRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 153
            K   WPKVRGVAMN V+HP+GGG HQH+G  S+V R   PG+KVG I
Sbjct:  186 KAIAWPKVRGVAMNAVDHPYGGGRHQHLGKPSSVSRHTSPGRKVGHI 232          
BLAST of DY257890 vs. ExPASy Swiss-Prot
Match: RL2_METM5 (50S ribosomal protein L2P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.301e-11
Identity = 30/47 (63.83%), Postives = 35/47 (74.47%), Query Frame = 1
Query:   13 KRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 153
            K   WPKVRGVAMN V+HP+GGG HQH+G  S+V R   PG+KVG I
Sbjct:  186 KAVAWPKVRGVAMNAVDHPYGGGRHQHLGKPSSVSRHTSPGRKVGHI 232          
The following BLAST results are available for this feature:
BLAST of DY257890 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
RL2_KORCO3.423e-1272.0950S ribosomal protein L2P OS=Korarchaeum cryptofil... [more]
RL2_THEVO4.471e-1278.9550S ribosomal protein L2P OS=Thermoplasma volcaniu... [more]
RL2_THEAC4.471e-1278.9550S ribosomal protein L2P OS=Thermoplasma acidophi... [more]
RL2_HYPBU4.471e-1260.7850S ribosomal protein L2P OS=Hyperthermus butylicu... [more]
RL2_METVS7.626e-1263.8350S ribosomal protein L2P OS=Methanococcus vanniel... [more]
RL2_METVA7.626e-1263.8350S ribosomal protein L2P OS=Methanococcus vanniel... [more]
RL2_METMP7.626e-1265.9650S ribosomal protein L2P OS=Methanococcus maripal... [more]
RL2_METM71.301e-1163.8350S ribosomal protein L2P OS=Methanococcus maripal... [more]
RL2_METM61.301e-1163.8350S ribosomal protein L2P OS=Methanococcus maripal... [more]
RL2_METM51.301e-1163.8350S ribosomal protein L2P OS=Methanococcus maripal... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2AB07ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257890 ID=DY257890; Name=DY257890; organism=Citrus clementina; type=EST; length=438bp
AAATTCAGAGTGAAGCGAAACTGCTGGCCTAAGGTGCGTGGTGTGGCCAT
GAACCCAGTGGAGCATCCTCATGGAGGAGGTAACCACCAGCACATTGGTC
ATGCTAGCACTGTTAGGCGTGATGCTCCCCCTGGCCAGAAGGTTGGTCTT
ATTGCAGCCAGGAGGACTGGTCGGCTCAGAGGACAAGCTGCTGCCACTGC
AGCCAAGGCCGACAAGGCTTAAATCCTTTGTGTTACCACAAATCGTCTCT
CTATCGCGATCTGTCATTTTACTTTTCCTGCTGCATCATTACCTTGGAAA
AATTTGTTGAGATTTGGATCTCTGGGATGATCCTGATGTTAAATTATGTT
GGCTTAAAGTTTAGCTTAATTTGCTCTTATCCTAAACTTTAGTTGATTTT
GATATTTTTGGATATATTAATGGATGCCTTCATCGAAT
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