DY257897

Overview
NameDY257897
Unique NameDY257897
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length912
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14117 contig Ccv1_Contig14117:179..1090. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257897 vs. ExPASy Swiss-Prot
Match: PMM2_HUMAN (Phosphomannomutase 2 OS=Homo sapiens GN=PMM2 PE=1 SV=1)

HSP 1 Score: 298.13 bits (762), Expect = 4.551e-80
Identity = 144/238 (60.50%), Postives = 184/238 (77.31%), Query Frame = 1
Query:   85 LALFDVDGTLTAPRKAATPQM*EFMRELRKVVTVGVVGGSDLSKISEHLGKTVIDEYDYVFSENGLVAHKDGKLIGTQSLKSFLGGEKLKEFINFTLHYIADLDIPIKRGTFIEFRSGMLNISPIGRNCSQEERDKFERYDKIHNIRPKMVSVLREKFAHLNLTFSIGGQISFDVFPQGWDKTYCLRYL--DDFNEIHFFGDKTYKGGNDHEIFESERTVGHTVTSPEDTME*CKALF 792
            L LFDVDGTLTAPR+  T +M +F+++LR+ + +GVVGGSD  K+ E LG  V+++YDYVF ENGLVA+KDGKL+  Q+++S LG   +++ IN+ L YIA + +P KRGTFIEFR+GMLN+SPIGR+CSQEER +F   DK  NIR K V+ LR++FA   LTFSIGGQISFDVFP GWDK YCLR++  D +  I+FFGDKT  GGNDHEIF   RT+G++VT+PEDT   C+ LF
Sbjct:    8 LCLFDVDGTLTAPRQKITKEMDDFLQKLRQKIKIGVVGGSDFEKVQEQLGNDVVEKYDYVFPENGLVAYKDGKLLCRQNIQSHLGEALIQDLINYCLSYIAKIKLPKKRGTFIEFRNGMLNVSPIGRSCSQEERIEFYELDKKENIRQKFVADLRKEFAGKGLTFSIGGQISFDVFPDGWDKRYCLRHVENDGYKTIYFFGDKTMPGGNDHEIFTDPRTMGYSVTAPEDTRRICELLF 245          
BLAST of DY257897 vs. ExPASy Swiss-Prot
Match: PMM2_DICDI (Phosphomannomutase 2 OS=Dictyostelium discoideum GN=pmmB PE=3 SV=2)

HSP 1 Score: 298.13 bits (762), Expect = 4.551e-80
Identity = 144/248 (58.06%), Postives = 185/248 (74.60%), Query Frame = 1
Query:   67 ARKQGLLALFDVDGTLTAPRKAATPQM*EFMRELRKVVTVGVVGGSDLSKISEHLGKTVIDEYDYVFSENGLVAHKDGKLIGTQSLKSFLGGEKLKEFINFTLHYIADLDIPIKRGTFIEFRSGMLNISPIGRNCSQEERDKFERYDKIHNIRPKMVSVLREKFAHLNLTFSIGGQISFDVFPQGWDKTYCLRYL--DDFNEIHFFGDKTYKGGNDHEIFESER-TVGHTVTSPEDTME*CKALFLAK 801
            ++ +  + LFDVD TLT PR A T +M E +  LR  + +GVVGGS+ +KI E LG+  I+++DYVF+ENGL+A+KDG L+  Q +K +LG E +K+FINF LHY+ADLDIPIKRGTF+EFR+GMLNISPIGRNCSQ+ER++FE+YD  H IR  MVS+L+E+F    L +SIGGQISFDVFP GWDKTYCLR+L  D+F  ++FFGDKT+ GGND+EI    R T   TV SP +T+      F  K
Sbjct:    2 SQNKNTICLFDVDDTLTKPRNAITNEMKELLASLRTKIKIGVVGGSNFNKIKEQLGENFINDFDYVFAENGLIAYKDGSLLEIQDIKKYLGEENIKKFINFVLHYVADLDIPIKRGTFVEFRNGMLNISPIGRNCSQQEREEFEKYDLEHKIRSTMVSILKEEFKSFGLQYSIGGQISFDVFPIGWDKTYCLRHLPEDEFKTLYFFGDKTFLGGNDYEIANHPRITQSFTVKSPANTLAILNDFFFKK 249          
BLAST of DY257897 vs. ExPASy Swiss-Prot
Match: PMM2_MOUSE (Phosphomannomutase 2 OS=Mus musculus GN=Pmm2 PE=2 SV=1)

HSP 1 Score: 293.508 bits (750), Expect = 1.121e-78
Identity = 142/238 (59.66%), Postives = 183/238 (76.89%), Query Frame = 1
Query:   85 LALFDVDGTLTAPRKAATPQM*EFMRELRKVVTVGVVGGSDLSKISEHLGKTVIDEYDYVFSENGLVAHKDGKLIGTQSLKSFLGGEKLKEFINFTLHYIADLDIPIKRGTFIEFRSGMLNISPIGRNCSQEERDKFERYDKIHNIRPKMVSVLREKFAHLNLTFSIGGQISFDVFPQGWDKTYCLRYLD--DFNEIHFFGDKTYKGGNDHEIFESERTVGHTVTSPEDTME*CKALF 792
            L LFD+DGTLTAPR+  T +M  F+++LR+   +GVVGGSD  K+ E LG  V+++YDYVF ENGLVA+KDGKL+  Q+++  LG + +++ IN+ L YIA++ +P KRGTFIEFR+GMLN+SPIGR+CSQEER +F   DK  +IR K V+ LR++FA   LTFSIGGQIS DVFP+GWDK YCLR+L+   +  I+FFGDKT  GGNDHEIF   RTVG+TVT+PEDT   C+ LF
Sbjct:    4 LCLFDMDGTLTAPRQKITEEMDGFLQKLRQKTKIGVVGGSDFEKLQEQLGNDVVEKYDYVFPENGLVAYKDGKLLCKQNIQGHLGEDVIQDLINYCLSYIANIKLPKKRGTFIEFRNGMLNVSPIGRSCSQEERIEFYELDKKEHIRQKFVADLRKEFAGKGLTFSIGGQISIDVFPEGWDKRYCLRHLEHAGYKTIYFFGDKTMPGGNDHEIFTDPRTVGYTVTAPEDTRRICEGLF 241          
BLAST of DY257897 vs. ExPASy Swiss-Prot
Match: PMM2_BOVIN (Phosphomannomutase 2 OS=Bos taurus GN=PMM2 PE=2 SV=1)

HSP 1 Score: 287.345 bits (734), Expect = 8.034e-77
Identity = 142/238 (59.66%), Postives = 177/238 (74.37%), Query Frame = 1
Query:   85 LALFDVDGTLTAPRKAATPQM*EFMRELRKVVTVGVVGGSDLSKISEHLGKTVIDEYDYVFSENGLVAHKDGKLIGTQSLKSFLGGEKLKEFINFTLHYIADLDIPIKRGTFIEFRSGMLNISPIGRNCSQEERDKFERYDKIHNIRPKMVSVLREKFAHLNLTFSIGGQISFDVFPQGWDKTYCLRYL--DDFNEIHFFGDKTYKGGNDHEIFESERTVGHTVTSPEDTME*CKALF 792
            L LFDVDGTLTAPR+  T  M  F+++LR+ + +GVVGGSD  K+ E LG  VI +YDYVF ENGLVA++DGKL+  Q+++  LG   +++ IN+ L YIA + +P KRGTFIEFR+GMLN+SPIGR+CSQEER +F   D+  NIR K V  LR++FA   LTFSIGGQISFDVFP GWDK YCL ++  D +  I+FFGDKT  GGNDHEIF   RTVG+TV +PEDT   C+ LF
Sbjct:    8 LCLFDVDGTLTAPRQKITKDMDCFLQKLRQKIKIGVVGGSDFEKVQEQLGDDVIKKYDYVFPENGLVAYRDGKLLCKQNIQGHLGEALIQDLINYCLSYIAKIKLPKKRGTFIEFRNGMLNVSPIGRSCSQEERIEFYELDQKENIRQKFVEDLRKEFAGKGLTFSIGGQISFDVFPDGWDKRYCLGHVEKDGYKTIYFFGDKTMPGGNDHEIFTDPRTVGYTVAAPEDTRRICEELF 245          
BLAST of DY257897 vs. ExPASy Swiss-Prot
Match: PMM_CANAL (Phosphomannomutase OS=Candida albicans GN=PMM1 PE=1 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 2.584e-75
Identity = 130/231 (56.28%), Postives = 177/231 (76.62%), Query Frame = 1
Query:   85 LALFDVDGTLTAPRKAATPQM*EFMRELRKVVTVGVVGGSDLSKISEHLGKTVIDEYDYVFSENGLVAHKDGKLIGTQSLKSFLGGEKLKEFINFTLHYIADLDIPIKRGTFIEFRSGMLNISPIGRNCSQEERDKFERYDKIHNIRPKMVSVLREKFAHLNLTFSIGGQISFDVFPQGWDKTYCLRYLDD--FNEIHFFGDKTYKGGNDHEIFESERTVGHTVTSPEDTM 771
            L LFDVDGTLT  R   + +M + + +LR+ V +G VGGSDLSK  E LG  V++++DY FSENGL A+K GK + +QS  +++G EK  + + F L Y++D+D+PI+RGTFIEFR+GM+N+SPIGRN S +ER+ +E++DK H+IR  MV  L+++F    LT+SIGGQISFDVFP GWDKTYCL++++D  F  IHFFGDK+YKGGND+EI+   RT+GH V SP+DT+
Sbjct:   12 LVLFDVDGTLTPARLTISEEMKKTLEKLREKVVIGFVGGSDLSKQVEQLGPNVLNDFDYCFSENGLTAYKLGKELASQSFINWIGNEKYNKLVKFILRYLSDIDLPIRRGTFIEFRNGMINVSPIGRNASTQERNDYEKFDKQHHIRETMVEALKKEFPDFGLTYSIGGQISFDVFPTGWDKTYCLQHVEDEHFENIHFFGDKSYKGGNDYEIYNDPRTIGHAVNSPDDTI 242          
BLAST of DY257897 vs. ExPASy Swiss-Prot
Match: PMM_YEAST (Phosphomannomutase OS=Saccharomyces cerevisiae GN=SEC53 PE=1 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 1.675e-74
Identity = 137/242 (56.61%), Postives = 177/242 (73.14%), Query Frame = 1
Query:   73 KQGLLALFDVDGTLTAPRKAATPQM*EFMRELRKVVTVGVVGGSDLSKISEHLGKTVIDEYDYVFSENGLVAHKDGKLIGTQSLKSFLGGEKLKEFINFTLHYIADLDIPIKRGTFIEFRSGMLNISPIGRNCSQEERDKFERYDKIHNIRPKMVSVLREKFAHLNLTFSIGGQISFDVFPQGWDKTYCLRYL--DDFNEIHFFGDKTYKGGNDHEIFESERTVGHTVTSPEDTME*CKALF 792
            K   L LFDVDGTLT  R   + ++ + + +LR    +G VGGSDLSK  E LG  V+DE+DY FSENGL A++ GK + +QS  ++LG EK  +   F L Y++++D+P +RGTF+EFR+GM+N+SPIGRN S EER++FERYDK H IR K V  L+++F    LTFSIGGQISFDVFP GWDKTYCL+++  D F EIHFFGDKT  GGND+EIF  ERT+GH+V SP+DT++    LF
Sbjct:   11 KPETLVLFDVDGTLTPARLTVSEEVRKTLAKLRNKCCIGFVGGSDLSKQLEQLGPNVLDEFDYSFSENGLTAYRLGKELASQSFINWLGEEKYNKLAVFILRYLSEIDLPKRRGTFLEFRNGMINVSPIGRNASTEERNEFERYDKEHQIRAKFVEALKKEFPDYGLTFSIGGQISFDVFPAGWDKTYCLQHVEKDGFKEIHFFGDKTMVGGNDYEIFVDERTIGHSVQSPDDTVKILTELF 252          
BLAST of DY257897 vs. ExPASy Swiss-Prot
Match: PMM_DROME (Probable phosphomannomutase OS=Drosophila melanogaster GN=CG10688 PE=2 SV=1)

HSP 1 Score: 279.256 bits (713), Expect = 2.188e-74
Identity = 132/243 (54.32%), Postives = 179/243 (73.66%), Query Frame = 1
Query:   55 TPMAARKQGLLALFDVDGTLTAPRKAATPQM*EFM-RELRKVVTVGVVGGSDLSKISEHL-GKTVIDEYDYVFSENGLVAHKDGKLIGTQSLKSFLGGEKLKEFINFTLHYIADLDIPIKRGTFIEFRSGMLNISPIGRNCSQEERDKFERYDKIHNIRPKMVSVLREKFAHLNLTFSIGGQISFDVFPQGWDKTYCLRYLD---DFNEIHFFGDKTYKGGNDHEIFESERTVGHTVTSPEDT 768
            T  A ++  +L LFDVDGTLT PR   TP+  EF    ++   T+G+VGGSDL K+ E L G+ +++E+D++F ENGLV  + GK +G Q++   LG E +K FINF L Y+++LD+PIKRGTFIEFR+GM+N+ PIGR C++EER+ F  YD  H +R KM+  L+++FA ++LT+SIGGQISFDVFP GWDKTYCLR+++    F EIHFFGDKT  GGND+EI+   RT+ H V +P+DT
Sbjct:    2 TTAALKRDEILLLFDVDGTLTMPRSVVTPEFEEFFYSRVKPRATIGIVGGSDLEKMFEQLNGRKILNEFDFIFPENGLVQIEGGKEVGKQNIIMHLGEETVKRFINFVLRYLSELDVPIKRGTFIEFRNGMMNVCPIGRQCTREERNMFAEYDIEHKVREKMIKDLKQEFADVDLTYSIGGQISFDVFPHGWDKTYCLRHIEAHYKFKEIHFFGDKTEPGGNDYEIYSDPRTISHRVYTPKDT 244          
BLAST of DY257897 vs. ExPASy Swiss-Prot
Match: PMM1_MOUSE (Phosphomannomutase 1 OS=Mus musculus GN=Pmm1 PE=2 SV=1)

HSP 1 Score: 271.552 bits (693), Expect = 4.562e-72
Identity = 137/247 (55.47%), Postives = 181/247 (73.28%), Query Frame = 1
Query:   64 AARKQGLLALFDVDGTLTAPRKAATPQM*EFMRELRKVVTVGVVGGSDLSKISEHLGK--TVIDEYDYVFSENGLVAHKDGKLIGTQSLKSFLGGEKLKEFINFTLHYIADLDIPIKRGTFIEFRSGMLNISPIGRNCSQEERDKFERYDKIHNIRPKMVSVLREKFAHLNLTFSIGGQISFDVFPQGWDKTYCLRYLDD--FNEIHFFGDKTYKGGNDHEIFESERTVGHTVTSPEDTME*CKALF 792
            A RK+ +L LFDVDGTLT  R+   P++  F+++LR  V +GVVGGSD SKI+E LG+   VI+++DYVF+ENG V +K G+L+  Q++++ LG E L++ INF L Y+A L +P KRGTFIEFR+GMLN+SPIGR+C+ EER +F   DK   IR K V  L+ +FA   L FS GG ISFDVFP+GWDK YCL  LD+  F+ IHFFG++T  GGND EI+   RTVGH+V SP+DT++ C+ LF
Sbjct:    8 ARRKERILCLFDVDGTLTPARQKIDPEVSAFLQKLRSRVQIGVVGGSDYSKIAEQLGEGDEVIEKFDYVFAENGTVQYKHGRLLSKQTIQNHLGEELLQDLINFCLSYMALLRLPKKRGTFIEFRNGMLNVSPIGRSCTLEERIEFSELDKKEKIREKFVEALKTEFAGKGLRFSRGGMISFDVFPEGWDKRYCLDSLDEDSFDIIHFFGNETSPGGNDFEIYADPRTVGHSVVSPQDTVQRCRELF 254          
BLAST of DY257897 vs. ExPASy Swiss-Prot
Match: PMM1_HUMAN (Phosphomannomutase 1 OS=Homo sapiens GN=PMM1 PE=1 SV=2)

HSP 1 Score: 269.24 bits (687), Expect = 2.264e-71
Identity = 137/247 (55.47%), Postives = 178/247 (72.06%), Query Frame = 1
Query:   64 AARKQGLLALFDVDGTLTAPRKAATPQM*EFMRELRKVVTVGVVGGSDLSKISEHLGK--TVIDEYDYVFSENGLVAHKDGKLIGTQSLKSFLGGEKLKEFINFTLHYIADLDIPIKRGTFIEFRSGMLNISPIGRNCSQEERDKFERYDKIHNIRPKMVSVLREKFAHLNLTFSIGGQISFDVFPQGWDKTYCLRYL--DDFNEIHFFGDKTYKGGNDHEIFESERTVGHTVTSPEDTME*CKALF 792
            A RK+ +L LFDVDGTLT  R+   P++  F+++LR  V +GVVGGSD  KI+E LG    VI+++DYVF+ENG V +K G+L+  Q++++ LG E L++ INF L Y+A L +P KRGTFIEFR+GMLNISPIGR+C+ EER +F   DK   IR K V  L+ +FA   L FS GG ISFDVFP+GWDK YCL  L  D F+ IHFFG++T  GGND EIF   RTVGH+V SP+DT++ C+ +F
Sbjct:    8 ARRKERVLCLFDVDGTLTPARQKIDPEVAAFLQKLRSRVQIGVVGGSDYCKIAEQLGDGDEVIEKFDYVFAENGTVQYKHGRLLSKQTIQNHLGEELLQDLINFCLSYMALLRLPKKRGTFIEFRNGMLNISPIGRSCTLEERIEFSELDKKEKIREKFVEALKTEFAGKGLRFSRGGMISFDVFPEGWDKRYCLDSLDQDSFDTIHFFGNETSPGGNDFEIFADPRTVGHSVVSPQDTVQRCREIF 254          
BLAST of DY257897 vs. ExPASy Swiss-Prot
Match: PMM_CAEEL (Probable phosphomannomutase OS=Caenorhabditis elegans GN=F52B11.2 PE=3 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 6.603e-63
Identity = 123/233 (52.79%), Postives = 150/233 (64.38%), Query Frame = 1
Query:  145 M*EFMRELRKVVTVGVVGGSDLSKISEHLGK------------------------TVIDEYDYVFSENGLVAHKDGKLIGTQSLKSFLGGEKLKEFINFTLHYIADLDIPIKRGTFIEFRSGMLNISPIGRNCSQEERDKFERYDKIHNIRPKMVSVLREKFAHLNLTFSIGGQISFDVFPQGWDKTYCLRYL-DDFNEIHFFGDKTYKGGNDHEIFESERTVGHTVTSPEDT 768
            M EF+ E RK V + +VGGSD  KI+E L                           V+  +DY FSENGL   K  +    QS++  +G  KL+E INF L Y++D+ +P+KRG F+EFR+GM+N+SPIGR+CSQEER +F  +DK H IR K    LREKF    L F+IGGQIS DVFP GWDKT+CL+YL  DF+ IHFFGDKT  GGNDHEIF  ERTVGHTV  PEDT
Sbjct:    1 MREFLIEARKRVPLAIVGGSDFKKITEQLADHDKDLCMSLLIFFFELQILISSFFPVLSLFDYTFSENGLYGFKGTEPYPVQSIQKAIGDAKLQELINFALRYMSDIQLPVKRGNFVEFRNGMINLSPIGRSCSQEERMQFVEFDKKHGIRQKFTEQLREKFGQYGLQFAIGGQISVDVFPTGWDKTFCLQYLVPDFDTIHFFGDKTAPGGNDHEIFADERTVGHTVEGPEDT 233          
The following BLAST results are available for this feature:
BLAST of DY257897 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
PMM2_HUMAN4.551e-8060.50Phosphomannomutase 2 OS=Homo sapiens GN=PMM2 PE=1 ... [more]
PMM2_DICDI4.551e-8058.06Phosphomannomutase 2 OS=Dictyostelium discoideum G... [more]
PMM2_MOUSE1.121e-7859.66Phosphomannomutase 2 OS=Mus musculus GN=Pmm2 PE=2 ... [more]
PMM2_BOVIN8.034e-7759.66Phosphomannomutase 2 OS=Bos taurus GN=PMM2 PE=2 SV... [more]
PMM_CANAL2.584e-7556.28Phosphomannomutase OS=Candida albicans GN=PMM1 PE=... [more]
PMM_YEAST1.675e-7456.61Phosphomannomutase OS=Saccharomyces cerevisiae GN=... [more]
PMM_DROME2.188e-7454.32Probable phosphomannomutase OS=Drosophila melanoga... [more]
PMM1_MOUSE4.562e-7255.47Phosphomannomutase 1 OS=Mus musculus GN=Pmm1 PE=2 ... [more]
PMM1_HUMAN2.264e-7155.47Phosphomannomutase 1 OS=Homo sapiens GN=PMM1 PE=1 ... [more]
PMM_CAEEL6.603e-6352.79Probable phosphomannomutase OS=Caenorhabditis eleg... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2AC10ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257897 ID=DY257897; Name=DY257897; organism=Citrus clementina; type=EST; length=912bp
GGCTCTACTCACGCTATTCATTCACTTCTATTCAGATAAATCTATACATT
TCAAACTCCAATGGCTGCTAGGAAGCAAGGTTTATTAGCTCTGTTTGATG
TTGACGGAACTCTCACGGCTCCGAGAAAGGCGGCAACACCACAAATGTGA
GAGTTCATGCGGGAATTGAGAAAGGTTGTTACAGTTGGAGTCGTCGGTGG
ATCTGATCTTTCTAAAATATCAGAGCACCTTGGGAAGACAGTTATTGATG
AATACGATTATGTGTTTTCTGAGAATGGTCTTGTGGCTCATAAGGATGGG
AAATTAATTGGCACACAGAGCTTGAAATCATTTCTTGGAGGGGAAAAGCT
CAAGGAATTCATAAATTTTACTCTTCATTACATTGCTGACTTGGACATTC
CAATTAAAAGGGGAACTTTCATTGAATTCCGAAGTGGGATGCTTAATATT
TCACCAATTGGGCGAAACTGCAGCCAAGAAGAAAGGGACAAGTTTGAGAG
GTATGACAAGATTCACAATATACGGCCAAAAATGGTGTCTGTGCTTCGGG
AGAAGTTTGCTCACCTTAACTTGACATTTTCAATTGGAGGACAGATAAGC
TTTGATGTGTTTCCCCAGGGATGGGACAAGACATACTGCTTGAGATACCT
TGATGACTTCAATGAAATTCACTTTTTTGGGGACAAAACTTACAAGGGAG
GGAATGATCATGAAATTTTTGAATCCGAGCGAACAGTGGGTCACACAGTT
ACCAGCCCTGAGGATACTATGGAATAGTGTAAGGCTCTCTTCCTGGCTAA
ACCGTGAATTTGGGAGAAGTTATAGTAAGTCTACAAACACAAGAGAATAA
TTCGTATTTCTAATGCGAGCAATTCATTGTAATTTTATTTGATCAATTGA
GAAAGGCATTTA
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