DY257921

Overview
NameDY257921
Unique NameDY257921
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1146
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY257921_ssr806 microsatellite DY257921_ssr806:806..817. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10112 contig Ccv1_Contig10112:4..1151. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY257921 vs. ExPASy Swiss-Prot
Match: PER1_SORBI (Cationic peroxidase SPC4 (Fragment) OS=Sorghum bicolor PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 3.996e-18
Identity = 58/130 (44.62%), Postives = 78/130 (60.00%), Query Frame = 3 
Query:    3 FVDGCDASILLDSTNTIDSEKFAAPNNN-SARGFEVIDNMKAAVEKACR-RVVSCADILTIAAERSVALSGGPSWAVPLGRRDSRT-ANRALANQNLPGPSNSLDELKSSFRNVGLNDKFDLVALSGAHT 383
            FV GCDAS+LLD + T   E+ A PN       F+ I+++   + K C   VVSC+D+L +AA  SV +SGGPS+ VPLGRRDS + A +      LP P+ ++  L +    + L D  DLVALSG HT
Sbjct:   84 FVQGCDASVLLDGSATGPGEQQAPPNLTLRPTAFKAINDIHDRLHKECGGTVVSCSDVLALAARDSVVVSGGPSYKVPLGRRDSASFATQQDVLSGLPPPTAAVPALLAVLSKINL-DATDLVALSGGHT 212
[Close]
BLAST of DY257921 vs. ExPASy Swiss-Prot
Match: APXT_ARATH (L-ascorbate peroxidase T, chloroplastic OS=Arabidopsis thaliana GN=APXT PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 1.245e-11
Identity = 59/198 (29.80%), Postives = 94/198 (47.47%), Query Frame = 3 
Query:  153 VSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLP--GPSNSLDELKSSFRNVGLNDKFDLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGNGAVLANFDVKTPDAFDNKYFSNLRLRKG----LLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNL 728
            +S AD+  +A+  ++  +GGP   +  GR D     +      LP  GP +  D L+  F  +GL+DK ++VALSGAHT GRA+         D +  GKP+    +T           G   A   ++ VK    FDN YF +++ ++     +L +D  LF  P     A  E +  +  AFFK++  +  ++ NL
Sbjct:  165 ISYADLFQLASATAIEEAGGPDIPMKYGRVDVVAPEQCPEEGRLPDAGPPSPADHLRDVFYRMGLDDK-EIVALSGAHTLGRAR--------PDRSGWGKPETKYTKT-----------GPGEAGGQSWTVKWL-KFDNSYFKDIKEKRDDDLLVLPTDAALFEDPSFKNYA--EKYAEDVAAFFKDYAEAHAKLSNL 339
The following BLAST results are available for this feature:
BLAST of DY257921 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
PER1_SORBI3.996e-1844.62Cationic peroxidase SPC4 (Fragment) OS=Sorghum bic... [more]
APXT_ARATH1.245e-1129.80L-ascorbate peroxidase T, chloroplastic OS=Arabido... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAB2AG10ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257921 ID=DY257921; Name=DY257921; organism=Citrus clementina; type=EST; length=1146bp
GTTTTGTTGATGGGTGTGATGCTTCGATTTTGCTGGACAGCACTAACACC
ATAGACAGCGAGAAATTTGCTGCGCCAAATAATAATTCGGCGAGGGGTTT
TGAAGTTATTGATAACATGAAAGCTGCCGTTGAAAAGGCATGTCGAAGGG
TTGTTTCCTGCGCTGATATTCTTACTATTGCGGCTGAACGATCCGTTGCT
TTGTCAGGGGGTCCGTCATGGGCAGTTCCATTGGGAAGAAGAGACAGCAG
AACGGCAAACAGAGCTCTTGCAAATCAGAATCTTCCAGGACCATCTAATT
CTCTTGATGAGCTCAAATCTAGTTTTAGAAATGTTGGCCTCAATGACAAG
TTTGATCTTGTTGCACTCTCCGGAGCTCACACGTTTGGAAGGGCTCAGTG
CAAATTTTTCAGTGACAGATTATACGATTTCAACAAAACTGGCAAGCCAG
ACCCAACAGTGGACAGAACCCTCTTAAAGCAACTGAGGGAACTATGCCCA
CAGGGTGGAAACGGCGCCGTTCTTGCTAATTTTGATGTCAAAACACCTGA
TGCTTTCGACAACAAATACTTCTCCAATCTTAGACTCCGCAAAGGCCTTC
TGCAGAGTGATCAAGAGTTGTTTTCGACTCCTGGTGCCGATACCGCTGCC
ATTGTCGAGGACTTTGGGAGGAACCAGACTGCTTTCTTTAAAAACTTTGT
GATCTCAATGATAAGAATGGGCAATTTGAAACCACTGACAGGAAATCAAG
GGGAGATTAGATTGAACTGCAGGAGGGTCAATGGAAACAATAATATTGCA
ACAAGATCATCATCATCGGAGGGTGATTTGGTCAGCTCTTTCTAATAAGC
TAGCTTGCGGCATATGCGAGAGAGTTTTTGTGCTTAACAAACTCGAATTT
AATCTTATCGTTTGGCCTGAAACATGTTATGTGTTTTCAATAAATTAACT
ATCAAACTTGATTTTATCTTATTTTCTTGTCTGAAACATGCTATGTATTT
TCAATAAATAATTAAACTTTGTGTTTTTGGGTCCCCTCCTGCTTTTCAAT
CCCCACCAAAAACCCTGAAACAGTAAATTCCCCGGTAAAATCTTATTTGT
TTAAAACGGGAGAATTTTTTTTTTAAAAAAAAGGGGTTTATAACTC
back to top