DY257923

Overview
NameDY257923
Unique NameDY257923
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length450
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9704 contig Ccv1_Contig9704:8..457. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257923 vs. ExPASy Swiss-Prot
Match: RS29_NEUCR (40S ribosomal protein S29 OS=Neurospora crassa GN=rps-29 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.463e-16
Identity = 35/56 (62.50%), Postives = 42/56 (75.00%), Query Frame = 3
Query:   81 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVKYR 248
            M H +VWNS P+TYG GSR+CRVC +   +IRKYGL  CRQCFR  A +IGF K+R
Sbjct:    1 MSHESVWNSRPRTYGKGSRSCRVCTHSAGLIRKYGLNICRQCFREKANDIGFTKHR 56          
BLAST of DY257923 vs. ExPASy Swiss-Prot
Match: RS29_MAGGR (40S ribosomal protein S29 OS=Magnaporthe grisea GN=RPS29 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 4.201e-16
Identity = 35/56 (62.50%), Postives = 43/56 (76.79%), Query Frame = 3
Query:   81 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVKYR 248
            M H +VWNS P+TYG G+R+CRVC +   +IRKYGL  CRQCFR  A +IGFVK+R
Sbjct:    1 MSHDSVWNSRPRTYGKGARSCRVCTHRAGLIRKYGLDICRQCFREKAADIGFVKHR 56          
BLAST of DY257923 vs. ExPASy Swiss-Prot
Match: RS29_ICTPU (40S ribosomal protein S29 OS=Ictalurus punctatus GN=rps29 PE=3 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 5.486e-16
Identity = 35/54 (64.81%), Postives = 42/54 (77.78%), Query Frame = 3
Query:   81 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVK 242
            MGH  ++ SHP+ +G GSR+CRVC N H +IRKYGL  CRQCFR  AK+IGFVK
Sbjct:    1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFVK 54          
BLAST of DY257923 vs. ExPASy Swiss-Prot
Match: RS29_HIPCM (40S ribosomal protein S29 OS=Hippocampus comes GN=rps29 PE=3 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 5.486e-16
Identity = 35/54 (64.81%), Postives = 42/54 (77.78%), Query Frame = 3
Query:   81 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVK 242
            MGH  ++ SHP+ +G GSR+CRVC N H +IRKYGL  CRQCFR  AK+IGFVK
Sbjct:    1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFVK 54          
BLAST of DY257923 vs. ExPASy Swiss-Prot
Match: RS29_RAT (40S ribosomal protein S29 OS=Rattus norvegicus GN=Rps29 PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 7.165e-16
Identity = 34/54 (62.96%), Postives = 42/54 (77.78%), Query Frame = 3
Query:   81 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVK 242
            MGH  ++ SHP+ +G GSR+CRVC N H +IRKYGL  CRQCFR  AK+IGF+K
Sbjct:    1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIK 54          
BLAST of DY257923 vs. ExPASy Swiss-Prot
Match: RS29_PONAB (40S ribosomal protein S29 OS=Pongo abelii GN=RPS29 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 7.165e-16
Identity = 34/54 (62.96%), Postives = 42/54 (77.78%), Query Frame = 3
Query:   81 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVK 242
            MGH  ++ SHP+ +G GSR+CRVC N H +IRKYGL  CRQCFR  AK+IGF+K
Sbjct:    1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIK 54          
BLAST of DY257923 vs. ExPASy Swiss-Prot
Match: RS29_MOUSE (40S ribosomal protein S29 OS=Mus musculus GN=Rps29 PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 7.165e-16
Identity = 34/54 (62.96%), Postives = 42/54 (77.78%), Query Frame = 3
Query:   81 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVK 242
            MGH  ++ SHP+ +G GSR+CRVC N H +IRKYGL  CRQCFR  AK+IGF+K
Sbjct:    1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIK 54          
BLAST of DY257923 vs. ExPASy Swiss-Prot
Match: RS29_LYSTE (40S ribosomal protein S29 OS=Lysiphlebus testaceipes GN=RpS29 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 7.165e-16
Identity = 35/54 (64.81%), Postives = 39/54 (72.22%), Query Frame = 3
Query:   81 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVK 242
            MG  N+W SHP+ YG GSR+CR C N H IIRKYGL  CRQCFR  A +IGF K
Sbjct:    1 MGFENIWFSHPRKYGQGSRSCRSCANKHGIIRKYGLNICRQCFREYASDIGFKK 54          
BLAST of DY257923 vs. ExPASy Swiss-Prot
Match: RS29_LONON (40S ribosomal protein S29 OS=Lonomia obliqua GN=RpS29 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 7.165e-16
Identity = 34/54 (62.96%), Postives = 40/54 (74.07%), Query Frame = 3
Query:   81 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVK 242
            MGH+N+W SHP+ Y  GSR+CR C N H +IRKYGL  CRQCFR  A +IGF K
Sbjct:    1 MGHANIWYSHPRRYCQGSRSCRACSNRHGLIRKYGLNICRQCFREYAHDIGFKK 54          
BLAST of DY257923 vs. ExPASy Swiss-Prot
Match: RS29_HUMAN (40S ribosomal protein S29 OS=Homo sapiens GN=RPS29 PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 7.165e-16
Identity = 34/54 (62.96%), Postives = 42/54 (77.78%), Query Frame = 3
Query:   81 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVK 242
            MGH  ++ SHP+ +G GSR+CRVC N H +IRKYGL  CRQCFR  AK+IGF+K
Sbjct:    1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIK 54          
The following BLAST results are available for this feature:
BLAST of DY257923 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RS29_NEUCR2.463e-1662.5040S ribosomal protein S29 OS=Neurospora crassa GN=... [more]
RS29_MAGGR4.201e-1662.5040S ribosomal protein S29 OS=Magnaporthe grisea GN... [more]
RS29_ICTPU5.486e-1664.8140S ribosomal protein S29 OS=Ictalurus punctatus G... [more]
RS29_HIPCM5.486e-1664.8140S ribosomal protein S29 OS=Hippocampus comes GN=... [more]
RS29_RAT7.165e-1662.9640S ribosomal protein S29 OS=Rattus norvegicus GN=... [more]
RS29_PONAB7.165e-1662.9640S ribosomal protein S29 OS=Pongo abelii GN=RPS29... [more]
RS29_MOUSE7.165e-1662.9640S ribosomal protein S29 OS=Mus musculus GN=Rps29... [more]
RS29_LYSTE7.165e-1664.8140S ribosomal protein S29 OS=Lysiphlebus testaceip... [more]
RS29_LONON7.165e-1662.9640S ribosomal protein S29 OS=Lonomia obliqua GN=Rp... [more]
RS29_HUMAN7.165e-1662.9640S ribosomal protein S29 OS=Homo sapiens GN=RPS29... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2AH03ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257923 ID=DY257923; Name=DY257923; organism=Citrus clementina; type=EST; length=450bp
GCTCGGCAGATTGTAGGGTTTTACACAAGCTTAAGCGAACCGGCTCTTCT
CTTTGTTAAAGAAGAAGAAAACAATCGATCATGGGTCACTCCAACGTTTG
GAACTCTCACCCCAAGACTTATGGGCCCGGTTCTCGCGCTTGCCGGGTTT
GTGGGAACCCTCATGCAATAATCAGGAAGTATGGGCTCATGTGCTGCAGA
CAATGCTTCCGTAGCAATGCCAAGGAGATTGGTTTTGTTAAGTACCGCTA
AATGATTAACATGTTGTCAACATCGGAAGGGGGGTTACCAGTACCATGCT
GATTTTGTTTCATCTGTGATGCCTGTAGCGAATTTCTGTTTCTCAAGGAT
TGTTAAGCGATGTTTTGTCTTAAATTGATTCAATGTTTGACAAAGCAATT
GTTGGACTAAGAATATCATTGATCATTCTTATTAAGGTTTAATCATTCCT
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