DY257923

Overview
NameDY257923
Unique NameDY257923
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length450
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9704 contig Ccv1_Contig9704:8..457. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DY257923 vs. ExPASy Swiss-Prot
Match: RS29_SCHPO (40S ribosomal protein S29 OS=Schizosaccharomyces pombe GN=rps29 PE=2 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 2.818e-12
Identity = 33/56 (58.93%), Postives = 36/56 (64.29%), Query Frame = 3 
Query:   81 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVKYR 248
            M H NVW SHP+ YG GSR C   G    +IRKYGL   RQ FR  A +IGFVKYR
Sbjct:    1 MAHENVWFSHPRKYGKGSRQCAHTGRRLGLIRKYGLNISRQSFREYANDIGFVKYR 56
The following BLAST results are available for this feature:
BLAST of DY257923 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RS29_SCHPO2.818e-1258.9340S ribosomal protein S29 OS=Schizosaccharomyces p... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2AH03ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257923 ID=DY257923; Name=DY257923; organism=Citrus clementina; type=EST; length=450bp
GCTCGGCAGATTGTAGGGTTTTACACAAGCTTAAGCGAACCGGCTCTTCT
CTTTGTTAAAGAAGAAGAAAACAATCGATCATGGGTCACTCCAACGTTTG
GAACTCTCACCCCAAGACTTATGGGCCCGGTTCTCGCGCTTGCCGGGTTT
GTGGGAACCCTCATGCAATAATCAGGAAGTATGGGCTCATGTGCTGCAGA
CAATGCTTCCGTAGCAATGCCAAGGAGATTGGTTTTGTTAAGTACCGCTA
AATGATTAACATGTTGTCAACATCGGAAGGGGGGTTACCAGTACCATGCT
GATTTTGTTTCATCTGTGATGCCTGTAGCGAATTTCTGTTTCTCAAGGAT
TGTTAAGCGATGTTTTGTCTTAAATTGATTCAATGTTTGACAAAGCAATT
GTTGGACTAAGAATATCATTGATCATTCTTATTAAGGTTTAATCATTCCT
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