DY257935

Overview
NameDY257935
Unique NameDY257935
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length781
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6825 contig Ccv1_Contig6825:398..1178. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257935 vs. ExPASy Swiss-Prot
Match: BGAL3_ARATH (Beta-galactosidase 3 OS=Arabidopsis thaliana GN=BGAL3 PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.263e-29
Identity = 57/106 (53.77%), Postives = 72/106 (67.92%), Query Frame = 3
Query:   15 SLAQKQPMTWYKTTFNVPPGNDPLPLHMGAMGKGMVWINGQSIGRHWPXXXXXXXXXXXXXXXTYTENKCRTYCRNPSQRWYHVPRSWLKPSGNLLVVFEEWGGEP 332
            ++ + QP+TW+KT F+ P GN+PL L M  MGKG +W+NG+SIGR+W                TY  NKC+T C  P+QRWYHVPR+WLKPS NLLV+FEE GG P
Sbjct:  619 TVQKPQPLTWHKTYFDAPEGNEPLALDMEGMGKGQIWVNGESIGRYWTAFATGDCSHCSYTG-TYKPNKCQTGCGQPTQRWYHVPRAWLKPSQNLLVIFEELGGNP 723          
BLAST of DY257935 vs. ExPASy Swiss-Prot
Match: BGAL4_ORYSJ (Beta-galactosidase 4 OS=Oryza sativa subsp. japonica GN=Os02g0219200 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.798e-29
Identity = 56/100 (56.00%), Postives = 69/100 (69.00%), Query Frame = 3
Query:   30 QPMTWYKTTFNVPPGNDPLPLHMGAMGKGMVWINGQSIGRHWPXXXXXXXXXXXXXXXTYTENKCRTYCRNPSQRWYHVPRSWLKPSGNLLVVFEEWGGE 329
            QP+TW+K  FN P GNDP+ L MG+MGKG +W+NG  +GR+W                TY E+KCR+ C + SQRWYHVPRSWLKP GNLLVV EE+GG+
Sbjct:  620 QPLTWHKAFFNAPAGNDPVALDMGSMGKGQLWVNGHHVGRYWSYKASGGCGGCSYAG-TYHEDKCRSNCGDLSQRWYHVPRSWLKPGGNLLVVLEEYGGD 718          
BLAST of DY257935 vs. ExPASy Swiss-Prot
Match: BGAL4_ORYSI (Beta-galactosidase 4 OS=Oryza sativa subsp. indica GN=OsI_006270 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.798e-29
Identity = 56/100 (56.00%), Postives = 69/100 (69.00%), Query Frame = 3
Query:   30 QPMTWYKTTFNVPPGNDPLPLHMGAMGKGMVWINGQSIGRHWPXXXXXXXXXXXXXXXTYTENKCRTYCRNPSQRWYHVPRSWLKPSGNLLVVFEEWGGE 329
            QP+TW+K  FN P GNDP+ L MG+MGKG +W+NG  +GR+W                TY E+KCR+ C + SQRWYHVPRSWLKP GNLLVV EE+GG+
Sbjct:  620 QPLTWHKAFFNAPAGNDPVALDMGSMGKGQLWVNGHHVGRYWSYKASGGCGGCSYAG-TYHEDKCRSNCGDLSQRWYHVPRSWLKPGGNLLVVLEEYGGD 718          
BLAST of DY257935 vs. ExPASy Swiss-Prot
Match: BGAL3_ORYSJ (Beta-galactosidase 3 OS=Oryza sativa subsp. japonica GN=Os01g0875500 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.823e-28
Identity = 55/105 (52.38%), Postives = 69/105 (65.71%), Query Frame = 3
Query:   24 QKQPMTWYKTTFNVPPGNDPLPLHMGAMGKGMVWINGQSIGRHWPXXXXXXXXXXXXXXX--TYTENKCRTYCRNPSQRWYHVPRSWLKPSGNLLVVFEEWGGEP 332
            + QPMTWYK   +VP G+DP+ L M +MGKG+ W+NG +IGR+WP                 T++ NKCR  C  P+QRWYHVPRSW  PSGN LV+FEE GG+P
Sbjct:  624 KNQPMTWYKVNVDVPQGDDPVGLDMQSMGKGLAWLNGNAIGRYWPRISPVSDRCTSSCDYRGTFSPNKCRRGCGQPTQRWYHVPRSWFHPSGNTLVIFEEKGGDP 728          
BLAST of DY257935 vs. ExPASy Swiss-Prot
Match: BGAL5_ORYSJ (Beta-galactosidase 5 OS=Oryza sativa subsp. japonica GN=Os03g0165400 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.182e-27
Identity = 57/109 (52.29%), Postives = 74/109 (67.89%), Query Frame = 3
Query:    6 QGASLAQ-KQPMTWYKTTFNVPPGNDPLPLHMGAMGKGMVWINGQSIGRHWPXXXXXXXXXXXXXXXTYTENKCRTYCRNPSQRWYHVPRSWLKPSGNLLVVFEEWGGE 329
            QG+ +AQ +QP+ WY+  F+ P G++PL L MG+MGKG +WINGQSIGR+W                +Y   KC+  C  P+QRWYHVPRSWL+P+ NLLVVFEE GG+
Sbjct:  608 QGSLVAQNQQPLAWYRAYFDTPSGDEPLALDMGSMGKGQIWINGQSIGRYW-TAYAEGDCKGCHYTGSYRAPKCQAGCGQPTQRWYHVPRSWLQPTRNLLVVFEELGGD 715          
BLAST of DY257935 vs. ExPASy Swiss-Prot
Match: BGAL8_ARATH (Beta-galactosidase 8 OS=Arabidopsis thaliana GN=BGAL8 PE=2 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 2.633e-27
Identity = 55/107 (51.40%), Postives = 68/107 (63.55%), Query Frame = 3
Query:   18 LAQKQPMTWYKTTFNVPPGNDPLPLHMGAMGKGMVWINGQSIGRHWP--XXXXXXXXXXXXXXXTYTENKCRTYCRNPSQRWYHVPRSWLKPSGNLLVVFEEWGGEP 332
            L  KQP+ WYKTTF+ P G++P+ +     GKG+ W+NGQSIGR+WP                 +Y  NKC   C  PSQ  YHVPRSWLKPSGN+LV+FEE GG+P
Sbjct:  621 LPTKQPLIWYKTTFDAPSGSEPVAIDFTGTGKGIAWVNGQSIGRYWPTSIAGNGGCTESCDYRGSYRANKCLKNCGKPSQTLYHVPRSWLKPSGNILVLFEEMGGDP 727          
BLAST of DY257935 vs. ExPASy Swiss-Prot
Match: BGAL9_ORYSJ (Beta-galactosidase 9 OS=Oryza sativa subsp. japonica GN=Os06g0573600 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.911e-26
Identity = 52/103 (50.49%), Postives = 67/103 (65.05%), Query Frame = 3
Query:   21 AQKQPMTWYKTTFNVPPGNDPLPLHMGAMGKGMVWINGQSIGRHWPXXXXXXXXXXXXXXXTYTENKCRTYCRNPSQRWYHVPRSWLKPSGNLLVVFEEWGGE 329
            A KQP+TW++  FN P G  P+ L +G+MGKG  W+NG  IGR+W                TY+E KC+  C + SQRWYHVPRSWL PSGNL+V+ EE+GG+
Sbjct:  603 AGKQPVTWHRAYFNAPAGGAPVALDLGSMGKGQAWVNGHLIGRYWSYKASGNCGGCSYAG-TYSEKKCQANCGDASQRWYHVPRSWLNPSGNLVVLLEEFGGD 704          
BLAST of DY257935 vs. ExPASy Swiss-Prot
Match: BGA15_ORYSJ (Beta-galactosidase 15 OS=Oryza sativa subsp. japonica GN=Os12g0429200 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.469e-26
Identity = 50/102 (49.02%), Postives = 63/102 (61.76%), Query Frame = 3
Query:   30 QPMTWYKTTFNVPPGNDPLPLHMGAMGKGMVWINGQSIGRHWPXXXXXXXXXXXXXXX-TYTENKCRTYCRNPSQRWYHVPRSWLKPSGNLLVVFEEWGGEP 332
            QP TWYKT F+ P G DP+ + +G+MGKG  W+NG  IGR+W                  Y E KC++ C  P+Q WYH+PR WLK S NLLV+FEE GG+P
Sbjct:  682 QPFTWYKTMFSTPKGTDPVAIDLGSMGKGQAWVNGHLIGRYWSLVAPESGCSSSCYYPGAYNERKCQSNCGMPTQNWYHIPREWLKESDNLLVLFEETGGDP 783          
BLAST of DY257935 vs. ExPASy Swiss-Prot
Match: BGA10_ARATH (Beta-galactosidase 10 OS=Arabidopsis thaliana GN=BGAL10 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.887e-25
Identity = 53/108 (49.07%), Postives = 65/108 (60.19%), Query Frame = 3
Query:   24 QKQPMTWYKTTFNVPPGNDPLPLHMGAMGKGMVWINGQSIGRHWP-----XXXXXXXXXXXXXXXTYTENKCRTYCRNPSQRWYHVPRSWLKPSGNLLVVFEEWGGEP 332
            +KQP+TWYK     P G++P+ L M +MGKGM W+NG+ IGR+WP                     +  +KC T C  PSQRWYHVPRSW K SGN LV+FEE GG P
Sbjct:  621 KKQPLTWYKVVIEPPSGSEPVGLDMISMGKGMAWLNGEEIGRYWPRIARKNSPNDECVKECDYRGKFMPDKCLTGCGEPSQRWYHVPRSWFKSSGNELVIFEEKGGNP 728          
BLAST of DY257935 vs. ExPASy Swiss-Prot
Match: BGAL6_ORYSJ (Beta-galactosidase 6 OS=Oryza sativa subsp. japonica GN=Os03g0255100 PE=1 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 3.934e-23
Identity = 49/103 (47.57%), Postives = 62/103 (60.19%), Query Frame = 3
Query:   30 QPMTWYKTTFNVPPGNDPLPLHMGAMGKGMVWINGQSIGRHWP--XXXXXXXXXXXXXXXTYTENKCRTYCRNPSQRWYHVPRSWLKPSGNLLVVFEEWGGEP 332
            QP+ WYKT F  P G+DP+ +    MGKG  W+NGQSIGR+WP                  Y+ NKC   C  PSQ  YHVPRS+L+P  N LV+FE++GG+P
Sbjct:  634 QPLIWYKTKFTAPAGDDPVAIDFTGMGKGEAWVNGQSIGRYWPTNLAPQSGCVNSCNYRGAYSSNKCLKKCGQPSQTLYHVPRSFLQPGSNDLVLFEQFGGDP 736          
The following BLAST results are available for this feature:
BLAST of DY257935 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
BGAL3_ARATH1.263e-2953.77Beta-galactosidase 3 OS=Arabidopsis thaliana GN=BG... [more]
BGAL4_ORYSJ4.798e-2956.00Beta-galactosidase 4 OS=Oryza sativa subsp. japoni... [more]
BGAL4_ORYSI4.798e-2956.00Beta-galactosidase 4 OS=Oryza sativa subsp. indica... [more]
BGAL3_ORYSJ1.823e-2852.38Beta-galactosidase 3 OS=Oryza sativa subsp. japoni... [more]
BGAL5_ORYSJ1.182e-2752.29Beta-galactosidase 5 OS=Oryza sativa subsp. japoni... [more]
BGAL8_ARATH2.633e-2751.40Beta-galactosidase 8 OS=Arabidopsis thaliana GN=BG... [more]
BGAL9_ORYSJ2.911e-2650.49Beta-galactosidase 9 OS=Oryza sativa subsp. japoni... [more]
BGA15_ORYSJ8.469e-2649.02Beta-galactosidase 15 OS=Oryza sativa subsp. japon... [more]
BGA10_ARATH1.887e-2549.07Beta-galactosidase 10 OS=Arabidopsis thaliana GN=B... [more]
BGAL6_ORYSJ3.934e-2347.57Beta-galactosidase 6 OS=Oryza sativa subsp. japoni... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2BB01ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257935 ID=DY257935; Name=DY257935; organism=Citrus clementina; type=EST; length=781bp
GGGCACAAGGAGCATCGTTGGCCCAAAAACAACCGATGACGTGGTACAAG
ACTACTTTCAATGTACCGCCAGGCAACGACCCATTACCTTTACACATGGG
TGCAATGGGAAAGGGGATGGTTTGGATCAATGGTCAGAGTATTGGGCGCC
ACTGGCCTGGATATATAGGAAATGGTAATTGTGGTGGTTGTAATTATGCT
GGAACTTACACCGAGAACAAATGCCGAACTTACTGCCGAAACCCCTCTCA
ACGATGGTATCACGTTCCCCGCTCATGGCTGAAGCCGAGTGGAAACCTGT
TGGTTGTGTTTGAAGAATGGGGCGGTGAACCACATTGGATCTCTTTGCTC
ACGAGAACAACATAAACAGCTACGACAATTATTTTCTTTTTCTTTTTCTC
ATTCTTCAATAATTCAAGCATACGCTTCCCTCATTTGCCAAGGTGATGAT
GGTTTGACTCCGACAAACGGGCAAACCAAAGTGTCCAACCATACCCATAA
TCTGGCCAAAGCCAAGAAGTATAGATTGTGAAGTTGTTGCAAGGATGCTC
CTTGTTGTATGTACATAGTCATAGTCAAGCTATATATTTGTCAATATAGC
TCTGCAAGCATACTTAAAGGTCATTCACTCAAATAGGCAAAAGTGTTAGT
TCCTCAAACATTCATGTAGGCTCGCTGGGTTTCACTCTTCATCAACTACA
AGTTTATAGTGGAAATCTTTTATTTCCTTGTCATTTAAAAATAAGTGGGA
AAGTAATAGATAGCAGCTTTTTGATTGCATC
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